RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 INTS3Q68E01 1043 aaKnown RBP20.09■□□□□ 0.81
SYNE1-227ENST00000489156 PHAXQ9H814 394 aaKnown RBP20.09■□□□□ 0.81
SYNE1-227ENST00000489156 G2E3Q7L622 706 aa20.08■□□□□ 0.81
SYNE1-227ENST00000489156 LRP10Q7Z4F1 713 aa20.08■□□□□ 0.81
SYNE1-227ENST00000489156 AMIGO3Q86WK7 504 aa20.08■□□□□ 0.81
SYNE1-227ENST00000489156 ZBTB7BO15156 539 aaPredicted RBP20.07■□□□□ 0.8
SYNE1-227ENST00000489156 RPS6KA4O75676 772 aa20.07■□□□□ 0.8
SYNE1-227ENST00000489156 IL6STP40189 918 aaPredicted RBP20.07■□□□□ 0.8
SYNE1-227ENST00000489156 AKT1S1Q96B36 256 aa20.07■□□□□ 0.8
SYNE1-227ENST00000489156 ANO8Q9HCE9 1232 aaPredicted RBP20.07■□□□□ 0.8
SYNE1-227ENST00000489156 HYPKQ9NX55 129 aa20.07■□□□□ 0.8
SYNE1-227ENST00000489156 RTCBQ9Y3I0 505 aaKnown RBP20.07■□□□□ 0.8
SYNE1-227ENST00000489156 TUBGCP6Q96RT7 1819 aa20.06■□□□□ 0.8
SYNE1-227ENST00000489156 EIF5P55010 431 aaKnown RBP20.06■□□□□ 0.8
SYNE1-227ENST00000489156 AIMP1Q12904 312 aaKnown RBP20.06■□□□□ 0.8
SYNE1-227ENST00000489156 PCDHB15Q9Y5E8 787 aa20.06■□□□□ 0.8
SYNE1-227ENST00000489156 PHF14O94880 888 aa20.05■□□□□ 0.8
SYNE1-227ENST00000489156 FLIIQ13045 1269 aa20.05■□□□□ 0.8
SYNE1-227ENST00000489156 COPS6Q7L5N1 327 aa20.05■□□□□ 0.8
SYNE1-227ENST00000489156 ARXQ96QS3 562 aa20.05■□□□□ 0.8
SYNE1-227ENST00000489156 TFCP2L1Q9NZI6 479 aa20.05■□□□□ 0.8
SYNE1-227ENST00000489156 NPM2Q86SE8 214 aaKnown RBP20.05■□□□□ 0.8
SYNE1-227ENST00000489156 XAGE3Q8WTP9 111 aa20.05■□□□□ 0.8
SYNE1-227ENST00000489156 RWDD1Q9H446 243 aaPredicted RBP20.05■□□□□ 0.8
SYNE1-227ENST00000489156 IGHDP01880 384 aa20.03■□□□□ 0.8
SYNE1-227ENST00000489156 SLC15A2Q16348 729 aa20.03■□□□□ 0.8
SYNE1-227ENST00000489156 TTLL7Q6ZT98 887 aa20.03■□□□□ 0.8
SYNE1-227ENST00000489156 STK32BQ9NY57 414 aa20.03■□□□□ 0.8
SYNE1-227ENST00000489156 COL15A1P39059 1388 aa20.03■□□□□ 0.8
SYNE1-227ENST00000489156 TBC1D2BQ9UPU7 963 aa20.03■□□□□ 0.8
SYNE1-227ENST00000489156 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.02■□□□□ 0.8
SYNE1-227ENST00000489156 CCT4P50991 539 aaKnown RBP20.02■□□□□ 0.8
SYNE1-227ENST00000489156 HDAC1Q13547 482 aaPredicted RBP20.02■□□□□ 0.8
SYNE1-227ENST00000489156 TRAPPC3LQ5T215 181 aa20.02■□□□□ 0.8
SYNE1-227ENST00000489156 ARHGEF1Q92888 912 aaKnown RBP20.02■□□□□ 0.8
SYNE1-227ENST00000489156 FKBP5Q13451 457 aaPredicted RBP20.01■□□□□ 0.79
SYNE1-227ENST00000489156 DZIP3Q86Y13 1208 aaKnown RBP20.01■□□□□ 0.79
SYNE1-227ENST00000489156 C4AP0C0L4 1744 aa20.01■□□□□ 0.79
SYNE1-227ENST00000489156 SSFA2P28290 1259 aa20.01■□□□□ 0.79
SYNE1-227ENST00000489156 ANKRD13DQ6ZTN6 518 aa19.99■□□□□ 0.79
SYNE1-227ENST00000489156 A0A087WZG4 1122 aa19.99■□□□□ 0.79
SYNE1-227ENST00000489156 ADRA2BP18089 450 aa19.99■□□□□ 0.79
SYNE1-227ENST00000489156 RFC4P35249 363 aa19.99■□□□□ 0.79
SYNE1-227ENST00000489156 ZBTB3Q9H5J0 574 aa19.99■□□□□ 0.79
SYNE1-227ENST00000489156 PNPLA7Q6ZV29 1317 aa19.98■□□□□ 0.79
SYNE1-227ENST00000489156 NUP98P52948 1817 aa19.98■□□□□ 0.79
SYNE1-227ENST00000489156 PXDNLA1KZ92 1463 aa19.98■□□□□ 0.79
SYNE1-227ENST00000489156 PI4KAP2A4QPH2 592 aa19.98■□□□□ 0.79
SYNE1-227ENST00000489156 KIF6Q6ZMV9 814 aa19.98■□□□□ 0.79
SYNE1-227ENST00000489156 COL23A1Q86Y22 540 aaPredicted RBP19.98■□□□□ 0.79
SYNE1-227ENST00000489156 PI4KAP1Q8N8J0 262 aa19.98■□□□□ 0.79
SYNE1-227ENST00000489156 QSER1Q2KHR3 1735 aa19.97■□□□□ 0.79
SYNE1-227ENST00000489156 F6X3S4 739 aa19.97■□□□□ 0.79
SYNE1-227ENST00000489156 DDX58O95786 925 aaKnown RBP19.97■□□□□ 0.79
SYNE1-227ENST00000489156 RIC3Q7Z5B4 369 aa19.97■□□□□ 0.79
SYNE1-227ENST00000489156 SRP68Q9UHB9 627 aaKnown RBP19.97■□□□□ 0.79
SYNE1-227ENST00000489156 ARFGEF2Q9Y6D5 1785 aa19.97■□□□□ 0.79
SYNE1-227ENST00000489156 SOCS7O14512 581 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 MSH5O43196 834 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 KSR2Q6VAB6 950 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 PLBD2Q8NHP8 589 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 MAP3K15Q6ZN16 1313 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 ZPR1O75312 459 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 CAMTA2O94983 1202 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 FLAD1Q8NFF5 587 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 NARFQ9UHQ1 456 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 MAP3K2Q9Y2U5 619 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 ADCY9O60503 1353 aa19.96■□□□□ 0.79
SYNE1-227ENST00000489156 HLFQ16534 295 aa19.95■□□□□ 0.78
SYNE1-227ENST00000489156 USPL1Q5W0Q7 1092 aa19.95■□□□□ 0.78
SYNE1-227ENST00000489156 SLC4A10Q6U841 1118 aa19.95■□□□□ 0.78
SYNE1-227ENST00000489156 BCORQ6W2J9 1755 aa19.95■□□□□ 0.78
SYNE1-227ENST00000489156 TSHZ2Q9NRE2 1034 aa19.94■□□□□ 0.78
SYNE1-227ENST00000489156 USP42Q9H9J4 1324 aaKnown RBP19.94■□□□□ 0.78
SYNE1-227ENST00000489156 PDGFDQ9GZP0 370 aaPredicted RBP19.94■□□□□ 0.78
SYNE1-227ENST00000489156 N4BP2Q86UW6 1770 aaPredicted RBP19.93■□□□□ 0.78
SYNE1-227ENST00000489156 ERVV-1B6SEH8 477 aa19.93■□□□□ 0.78
SYNE1-227ENST00000489156 R3HDM1Q15032 1099 aaKnown RBP19.93■□□□□ 0.78
SYNE1-227ENST00000489156 DNAAF4Q8WXU2 420 aa19.93■□□□□ 0.78
SYNE1-227ENST00000489156 SCN7AQ01118 1682 aa19.93■□□□□ 0.78
SYNE1-227ENST00000489156 GIGYF2Q6Y7W6 1299 aaKnown RBP19.92■□□□□ 0.78
SYNE1-227ENST00000489156 BCL2L12Q9HB09 334 aa19.92■□□□□ 0.78
SYNE1-227ENST00000489156 SMC5Q8IY18 1101 aa19.92■□□□□ 0.78
SYNE1-227ENST00000489156 RPAP2Q8IXW5 612 aaPredicted RBP19.91■□□□□ 0.78
SYNE1-227ENST00000489156 METTL22Q9BUU2 404 aaPredicted RBP19.91■□□□□ 0.78
SYNE1-227ENST00000489156 PSDA5PKW4 1024 aaPredicted RBP19.9■□□□□ 0.78
SYNE1-227ENST00000489156 GNAI3P08754 354 aa19.9■□□□□ 0.78
SYNE1-227ENST00000489156 GYS1P13807 737 aa19.9■□□□□ 0.78
SYNE1-227ENST00000489156 MYD88Q99836 296 aa19.9■□□□□ 0.78
SYNE1-227ENST00000489156 ANKRD36CQ5JPF3 1778 aa19.9■□□□□ 0.78
SYNE1-227ENST00000489156 MEIS3Q99687 375 aa19.9■□□□□ 0.78
SYNE1-227ENST00000489156 ZNF652Q9Y2D9 606 aa19.9■□□□□ 0.78
SYNE1-227ENST00000489156 AFDNP55196 1824 aaKnown RBP19.89■□□□□ 0.77
SYNE1-227ENST00000489156 ATP5J2-PTCD1G3V325 749 aa19.89■□□□□ 0.77
SYNE1-227ENST00000489156 TCIRG1Q13488 830 aa19.89■□□□□ 0.77
SYNE1-227ENST00000489156 CLEC4GQ6UXB4 293 aa19.89■□□□□ 0.77
SYNE1-227ENST00000489156 ATP10DQ9P241 1426 aa19.89■□□□□ 0.77
SYNE1-227ENST00000489156 GCC1Q96CN9 775 aa19.88■□□□□ 0.77
SYNE1-227ENST00000489156 SRCIN1Q9C0H9 1055 aa19.88■□□□□ 0.77
SYNE1-227ENST00000489156 GPTP24298 496 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms