RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 NPM2Q86SE8 214 aaKnown RBP13.28□□□□□ -0.28
SKA1-204ENST00000488454 HOXB7P09629 217 aa13.27□□□□□ -0.29
SKA1-204ENST00000488454 EXOSC9Q06265 439 aaKnown RBP13.27□□□□□ -0.29
SKA1-204ENST00000488454 C8orf58Q8NAV2 365 aa13.27□□□□□ -0.29
SKA1-204ENST00000488454 LINC00116Q8NCU8 138 aa13.27□□□□□ -0.29
SKA1-204ENST00000488454 AK7Q96M32 723 aa13.27□□□□□ -0.29
SKA1-204ENST00000488454 STK32BQ9NY57 414 aa13.27□□□□□ -0.29
SKA1-204ENST00000488454 USP16Q9Y5T5 823 aa13.27□□□□□ -0.29
SKA1-204ENST00000488454 SOS1Q07889 1333 aaPredicted RBP13.27□□□□□ -0.29
SKA1-204ENST00000488454 PRAMEF22A3QJZ6 481 aa13.26□□□□□ -0.29
SKA1-204ENST00000488454 CYP19A1P11511 503 aaPredicted RBP13.26□□□□□ -0.29
SKA1-204ENST00000488454 KRT24Q2M2I5 525 aa13.26□□□□□ -0.29
SKA1-204ENST00000488454 TWISTNBQ3B726 338 aaPredicted RBP13.26□□□□□ -0.29
SKA1-204ENST00000488454 RC3H1Q5TC82 1133 aaKnown RBP13.26□□□□□ -0.29
SKA1-204ENST00000488454 TRMT2AQ8IZ69 625 aaKnown RBP13.26□□□□□ -0.29
SKA1-204ENST00000488454 SIPA1L3O60292 1781 aaPredicted RBP13.25□□□□□ -0.29
SKA1-204ENST00000488454 TNS1Q9HBL0 1735 aaKnown RBP13.25□□□□□ -0.29
SKA1-204ENST00000488454 KCPQ6ZWJ8 1503 aa13.25□□□□□ -0.29
SKA1-204ENST00000488454 CRKLP46109 303 aaKnown RBP13.25□□□□□ -0.29
SKA1-204ENST00000488454 HDGFL1Q5TGJ6 251 aa13.25□□□□□ -0.29
SKA1-204ENST00000488454 HS6ST3Q8IZP7 471 aa13.25□□□□□ -0.29
SKA1-204ENST00000488454 NECTIN2Q92692 538 aa13.25□□□□□ -0.29
SKA1-204ENST00000488454 CCDC87Q9NVE4 849 aa13.25□□□□□ -0.29
SKA1-204ENST00000488454 TFCP2L1Q9NZI6 479 aa13.25□□□□□ -0.29
SKA1-204ENST00000488454 VIRMAQ69YN4 1812 aaKnown RBP13.25□□□□□ -0.29
SKA1-204ENST00000488454 GNPATO15228 680 aa13.24□□□□□ -0.29
SKA1-204ENST00000488454 A1BGP04217 495 aa13.24□□□□□ -0.29
SKA1-204ENST00000488454 CANXP27824 592 aaKnown RBP13.24□□□□□ -0.29
SKA1-204ENST00000488454 CCDC30Q5VVM6 783 aa13.24□□□□□ -0.29
SKA1-204ENST00000488454 TSPYL6Q8N831 410 aa13.24□□□□□ -0.29
SKA1-204ENST00000488454 RTCBQ9Y3I0 505 aaKnown RBP13.24□□□□□ -0.29
SKA1-204ENST00000488454 CNTNAP4Q9C0A0 1308 aa13.23□□□□□ -0.29
SKA1-204ENST00000488454 VAMP4O75379 141 aa13.23□□□□□ -0.29
SKA1-204ENST00000488454 SLC15A2Q16348 729 aa13.23□□□□□ -0.29
SKA1-204ENST00000488454 INTS5Q6P9B9 1019 aaKnown RBP13.23□□□□□ -0.29
SKA1-204ENST00000488454 PAPPAQ13219 1627 aa13.22□□□□□ -0.29
SKA1-204ENST00000488454 RPS6KA4O75676 772 aa13.22□□□□□ -0.29
SKA1-204ENST00000488454 CT47B1P0C2W7 299 aaPredicted RBP13.22□□□□□ -0.29
SKA1-204ENST00000488454 TRAPPC3LQ5T215 181 aa13.22□□□□□ -0.29
SKA1-204ENST00000488454 FLAD1Q8NFF5 587 aa13.22□□□□□ -0.29
SKA1-204ENST00000488454 OTUD5Q96G74 571 aa13.22□□□□□ -0.29
SKA1-204ENST00000488454 ARXQ96QS3 562 aa13.22□□□□□ -0.29
SKA1-204ENST00000488454 STK31Q9BXU1 1019 aa13.22□□□□□ -0.29
SKA1-204ENST00000488454 DBF4Q9UBU7 674 aaPredicted RBP13.22□□□□□ -0.29
SKA1-204ENST00000488454 ZNF330Q9Y3S2 320 aaPredicted RBP13.22□□□□□ -0.29
SKA1-204ENST00000488454 ERBB4Q15303 1308 aa13.21□□□□□ -0.29
SKA1-204ENST00000488454 PHF14O94880 888 aa13.21□□□□□ -0.29
SKA1-204ENST00000488454 MYL6BP14649 208 aa13.21□□□□□ -0.29
SKA1-204ENST00000488454 ZNF428Q96B54 188 aa13.21□□□□□ -0.29
SKA1-204ENST00000488454 ZBTB1Q9Y2K1 713 aa13.21□□□□□ -0.29
SKA1-204ENST00000488454 KDM3BQ7LBC6 1761 aa13.21□□□□□ -0.29
SKA1-204ENST00000488454 LY75O60449 1722 aa13.2□□□□□ -0.3
SKA1-204ENST00000488454 A0A087WZG4 1122 aa13.2□□□□□ -0.3
SKA1-204ENST00000488454 IL6STP40189 918 aaPredicted RBP13.2□□□□□ -0.3
SKA1-204ENST00000488454 ZNF827Q17R98 1081 aa13.2□□□□□ -0.3
SKA1-204ENST00000488454 DPY19L2Q6NUT2 758 aa13.2□□□□□ -0.3
SKA1-204ENST00000488454 MAMSTRQ6ZN01 415 aa13.2□□□□□ -0.3
SKA1-204ENST00000488454 DDX21Q9NR30 783 aaKnown RBP eCLIP13.2□□□□□ -0.3
SKA1-204ENST00000488454 HYPKQ9NX55 129 aa13.2□□□□□ -0.3
SKA1-204ENST00000488454 RGPD3A6NKT7 1758 aaPredicted RBP13.2□□□□□ -0.3
SKA1-204ENST00000488454 RGPD4Q7Z3J3 1758 aa13.2□□□□□ -0.3
SKA1-204ENST00000488454 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.19□□□□□ -0.3
SKA1-204ENST00000488454 TCERG1O14776 1098 aaKnown RBP13.19□□□□□ -0.3
SKA1-204ENST00000488454 SSFA2P28290 1259 aa13.19□□□□□ -0.3
SKA1-204ENST00000488454 RFC4P35249 363 aa13.19□□□□□ -0.3
SKA1-204ENST00000488454 PIP4K2AP48426 406 aaPredicted RBP13.19□□□□□ -0.3
SKA1-204ENST00000488454 ANO8Q9HCE9 1232 aaPredicted RBP13.19□□□□□ -0.3
SKA1-204ENST00000488454 CHPF2Q9P2E5 772 aa13.19□□□□□ -0.3
SKA1-204ENST00000488454 UBR2Q8IWV8 1755 aa13.19□□□□□ -0.3
SKA1-204ENST00000488454 NBPF26B4DH59 902 aa13.18□□□□□ -0.3
SKA1-204ENST00000488454 ZPR1O75312 459 aa13.18□□□□□ -0.3
SKA1-204ENST00000488454 EIF5P55010 431 aaKnown RBP13.18□□□□□ -0.3
SKA1-204ENST00000488454 R3HDM1Q15032 1099 aaKnown RBP13.18□□□□□ -0.3
SKA1-204ENST00000488454 NBPF10Q6P3W6 841 aaKnown RBP13.18□□□□□ -0.3
SKA1-204ENST00000488454 NBPF15Q8N660 670 aa13.18□□□□□ -0.3
SKA1-204ENST00000488454 ZNF831Q5JPB2 1677 aa13.18□□□□□ -0.3
SKA1-204ENST00000488454 AIMP1Q12904 312 aaKnown RBP13.17□□□□□ -0.3
SKA1-204ENST00000488454 PDIA6Q15084 440 aa13.17□□□□□ -0.3
SKA1-204ENST00000488454 KIF6Q6ZMV9 814 aa13.17□□□□□ -0.3
SKA1-204ENST00000488454 ARHGEF1Q92888 912 aaKnown RBP13.17□□□□□ -0.3
SKA1-204ENST00000488454 MFRPQ9BY79 579 aa13.17□□□□□ -0.3
SKA1-204ENST00000488454 ANXA1P04083 346 aa13.16□□□□□ -0.3
SKA1-204ENST00000488454 ALDH1L2Q3SY69 923 aa13.16□□□□□ -0.3
SKA1-204ENST00000488454 SMIM5Q71RC9 77 aa13.16□□□□□ -0.3
SKA1-204ENST00000488454 DZIP3Q86Y13 1208 aaKnown RBP13.16□□□□□ -0.3
SKA1-204ENST00000488454 COL23A1Q86Y22 540 aaPredicted RBP13.16□□□□□ -0.3
SKA1-204ENST00000488454 MS4A4AQ96JQ5 239 aa13.16□□□□□ -0.3
SKA1-204ENST00000488454 PSDA5PKW4 1024 aaPredicted RBP13.15□□□□□ -0.3
SKA1-204ENST00000488454 DDX58O95786 925 aaKnown RBP13.15□□□□□ -0.3
SKA1-204ENST00000488454 PROSER3Q2NL68 480 aa13.15□□□□□ -0.3
SKA1-204ENST00000488454 COPS6Q7L5N1 327 aa13.15□□□□□ -0.3
SKA1-204ENST00000488454 FBXO22Q8NEZ5 403 aa13.15□□□□□ -0.3
SKA1-204ENST00000488454 XAGE3Q8WTP9 111 aa13.15□□□□□ -0.3
SKA1-204ENST00000488454 SCUBE2Q9NQ36 999 aa13.15□□□□□ -0.3
SKA1-204ENST00000488454 SMC4Q9NTJ3 1288 aa13.15□□□□□ -0.3
SKA1-204ENST00000488454 TBC1D2BQ9UPU7 963 aa13.15□□□□□ -0.3
SKA1-204ENST00000488454 C4BP0C0L5 1744 aa13.15□□□□□ -0.3
SKA1-204ENST00000488454 C5P01031 1676 aa13.15□□□□□ -0.31
SKA1-204ENST00000488454 PNPLA7Q6ZV29 1317 aa13.14□□□□□ -0.31
SKA1-204ENST00000488454 TJP1Q07157 1748 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms