RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 SALL2Q9Y467 1007 aaPredicted RBP19.47■□□□□ 0.71
TRIM54-204ENST00000488321 FAM177BA6PVY3 158 aa19.46■□□□□ 0.71
TRIM54-204ENST00000488321 ZNF853P0CG23 659 aa19.46■□□□□ 0.71
TRIM54-204ENST00000488321 KCNA3P22001 575 aa19.46■□□□□ 0.71
TRIM54-204ENST00000488321 HDGFL1Q5TGJ6 251 aa19.46■□□□□ 0.71
TRIM54-204ENST00000488321 PRR5LQ6MZQ0 368 aa19.46■□□□□ 0.71
TRIM54-204ENST00000488321 NBPF5PQ86XG9 351 aaPredicted RBP19.46■□□□□ 0.71
TRIM54-204ENST00000488321 MAP3K15Q6ZN16 1313 aa19.46■□□□□ 0.71
TRIM54-204ENST00000488321 LAMB4A4D0S4 1761 aa19.45■□□□□ 0.7
TRIM54-204ENST00000488321 RGL2O15211 777 aa19.45■□□□□ 0.7
TRIM54-204ENST00000488321 ST5P78524 1137 aa19.45■□□□□ 0.7
TRIM54-204ENST00000488321 PDIA6Q15084 440 aa19.45■□□□□ 0.7
TRIM54-204ENST00000488321 PROSER3Q2NL68 480 aa19.45■□□□□ 0.7
TRIM54-204ENST00000488321 DALRD3Q5D0E6 543 aaKnown RBP19.45■□□□□ 0.7
TRIM54-204ENST00000488321 DUSP27Q5VZP5 1158 aa19.45■□□□□ 0.7
TRIM54-204ENST00000488321 C2CD5Q86YS7 1000 aa19.45■□□□□ 0.7
TRIM54-204ENST00000488321 ERVV-1B6SEH8 477 aa19.44■□□□□ 0.7
TRIM54-204ENST00000488321 H0YIN7 160 aa19.44■□□□□ 0.7
TRIM54-204ENST00000488321 HOXB7P09629 217 aa19.44■□□□□ 0.7
TRIM54-204ENST00000488321 CCDC27Q2M243 656 aa19.44■□□□□ 0.7
TRIM54-204ENST00000488321 WWC1Q8IX03 1113 aa19.44■□□□□ 0.7
TRIM54-204ENST00000488321 ELL2O00472 640 aaPredicted RBP19.43■□□□□ 0.7
TRIM54-204ENST00000488321 AIMP1Q12904 312 aaKnown RBP19.43■□□□□ 0.7
TRIM54-204ENST00000488321 BRIP1Q9BX63 1249 aa19.43■□□□□ 0.7
TRIM54-204ENST00000488321 CHPF2Q9P2E5 772 aa19.43■□□□□ 0.7
TRIM54-204ENST00000488321 PDE6BP35913 854 aa19.42■□□□□ 0.7
TRIM54-204ENST00000488321 TPTE2Q6XPS3 522 aa19.42■□□□□ 0.7
TRIM54-204ENST00000488321 DDX21Q9NR30 783 aaKnown RBP eCLIP19.42■□□□□ 0.7
TRIM54-204ENST00000488321 GPTP24298 496 aa19.41■□□□□ 0.7
TRIM54-204ENST00000488321 GTF2E1P29083 439 aaPredicted RBP19.41■□□□□ 0.7
TRIM54-204ENST00000488321 ARHGAP27Q6ZUM4 889 aa19.41■□□□□ 0.7
TRIM54-204ENST00000488321 COPS6Q7L5N1 327 aa19.41■□□□□ 0.7
TRIM54-204ENST00000488321 LRP10Q7Z4F1 713 aa19.41■□□□□ 0.7
TRIM54-204ENST00000488321 XAGE3Q8WTP9 111 aa19.41■□□□□ 0.7
TRIM54-204ENST00000488321 TSR2Q969E8 191 aaKnown RBP19.41■□□□□ 0.7
TRIM54-204ENST00000488321 KIF13BQ9NQT8 1826 aa19.4■□□□□ 0.7
TRIM54-204ENST00000488321 ZNF622Q969S3 477 aaKnown RBP eCLIP19.4■□□□□ 0.7
TRIM54-204ENST00000488321 DBF4Q9UBU7 674 aaPredicted RBP19.4■□□□□ 0.7
TRIM54-204ENST00000488321 NCBP3Q53F19 620 aaKnown RBP19.39■□□□□ 0.69
TRIM54-204ENST00000488321 GIGYF2Q6Y7W6 1299 aaKnown RBP19.39■□□□□ 0.69
TRIM54-204ENST00000488321 C8orf58Q8NAV2 365 aa19.39■□□□□ 0.69
TRIM54-204ENST00000488321 PDZRN3Q9UPQ7 1066 aa19.39■□□□□ 0.69
TRIM54-204ENST00000488321 KIAA1551Q9HCM1 1747 aa19.39■□□□□ 0.69
TRIM54-204ENST00000488321 BCORQ6W2J9 1755 aa19.39■□□□□ 0.69
TRIM54-204ENST00000488321 N4BP2Q86UW6 1770 aaPredicted RBP19.38■□□□□ 0.69
TRIM54-204ENST00000488321 TTLL6Q8N841 843 aa19.38■□□□□ 0.69
TRIM54-204ENST00000488321 NRXN2Q9P2S2 1712 aa19.38■□□□□ 0.69
TRIM54-204ENST00000488321 ATP10DQ9P241 1426 aa19.37■□□□□ 0.69
TRIM54-204ENST00000488321 ZNF784Q8NCA9 323 aaPredicted RBP19.37■□□□□ 0.69
TRIM54-204ENST00000488321 NYXQ9GZU5 481 aa19.37■□□□□ 0.69
TRIM54-204ENST00000488321 IL16Q14005 1332 aa19.36■□□□□ 0.69
TRIM54-204ENST00000488321 UBN2Q6ZU65 1347 aa19.36■□□□□ 0.69
TRIM54-204ENST00000488321 NUTM1Q86Y26 1132 aa19.36■□□□□ 0.69
TRIM54-204ENST00000488321 HYPKQ9NX55 129 aa19.36■□□□□ 0.69
TRIM54-204ENST00000488321 HSP90AB3PQ58FF7 597 aa19.35■□□□□ 0.69
TRIM54-204ENST00000488321 SUSD4Q5VX71 490 aa19.35■□□□□ 0.69
TRIM54-204ENST00000488321 WDR63Q8IWG1 891 aa19.35■□□□□ 0.69
TRIM54-204ENST00000488321 ZNF34Q8IZ26 560 aa19.35■□□□□ 0.69
TRIM54-204ENST00000488321 TSPYL6Q8N831 410 aa19.35■□□□□ 0.69
TRIM54-204ENST00000488321 AFDNP55196 1824 aaKnown RBP19.35■□□□□ 0.69
TRIM54-204ENST00000488321 PARP10Q53GL7 1025 aa19.34■□□□□ 0.69
TRIM54-204ENST00000488321 CHMP4AQ9BY43 222 aa19.34■□□□□ 0.69
TRIM54-204ENST00000488321 ZNF219Q9P2Y4 722 aaPredicted RBP19.34■□□□□ 0.69
TRIM54-204ENST00000488321 SRGNP10124 158 aa19.33■□□□□ 0.68
TRIM54-204ENST00000488321 ERFEQ4G0M1 354 aa19.33■□□□□ 0.68
TRIM54-204ENST00000488321 CCDC30Q5VVM6 783 aa19.33■□□□□ 0.68
TRIM54-204ENST00000488321 ANKRD13DQ6ZTN6 518 aa19.33■□□□□ 0.68
TRIM54-204ENST00000488321 PPP1R42Q7Z4L9 355 aa19.33■□□□□ 0.68
TRIM54-204ENST00000488321 MASTLQ96GX5 879 aa19.33■□□□□ 0.68
TRIM54-204ENST00000488321 FANCIQ9NVI1 1328 aa19.32■□□□□ 0.68
TRIM54-204ENST00000488321 TWISTNBQ3B726 338 aaPredicted RBP19.32■□□□□ 0.68
TRIM54-204ENST00000488321 STYK1Q6J9G0 422 aa19.32■□□□□ 0.68
TRIM54-204ENST00000488321 PLBD2Q8NHP8 589 aa19.32■□□□□ 0.68
TRIM54-204ENST00000488321 CNKSR1Q969H4 720 aa19.32■□□□□ 0.68
TRIM54-204ENST00000488321 CCER2I3L3R5 266 aa19.31■□□□□ 0.68
TRIM54-204ENST00000488321 NTSR2O95665 410 aa19.31■□□□□ 0.68
TRIM54-204ENST00000488321 GOLGA2Q08379 1002 aa19.31■□□□□ 0.68
TRIM54-204ENST00000488321 TCIRG1Q13488 830 aa19.31■□□□□ 0.68
TRIM54-204ENST00000488321 UTP14AQ9BVJ6 771 aaKnown RBP19.31■□□□□ 0.68
TRIM54-204ENST00000488321 PHAXQ9H814 394 aaKnown RBP19.31■□□□□ 0.68
TRIM54-204ENST00000488321 ABCC12Q96J65 1359 aa19.31■□□□□ 0.68
TRIM54-204ENST00000488321 IBTKQ9P2D0 1353 aaPredicted RBP19.31■□□□□ 0.68
TRIM54-204ENST00000488321 TCERG1O14776 1098 aaKnown RBP19.3■□□□□ 0.68
TRIM54-204ENST00000488321 C21orf2O43822 256 aa19.3■□□□□ 0.68
TRIM54-204ENST00000488321 NPR1P16066 1061 aa19.3■□□□□ 0.68
TRIM54-204ENST00000488321 RIC3Q7Z5B4 369 aa19.3■□□□□ 0.68
TRIM54-204ENST00000488321 ZNF428Q96B54 188 aa19.3■□□□□ 0.68
TRIM54-204ENST00000488321 STK31Q9BXU1 1019 aa19.3■□□□□ 0.68
TRIM54-204ENST00000488321 DIEXFQ68CQ4 756 aaKnown RBP19.29■□□□□ 0.68
TRIM54-204ENST00000488321 PRPF40BQ6NWY9 871 aaKnown RBP19.29■□□□□ 0.68
TRIM54-204ENST00000488321 NLRP10Q86W26 655 aa19.29■□□□□ 0.68
TRIM54-204ENST00000488321 ZNF526Q8TF50 670 aaPredicted RBP19.29■□□□□ 0.68
TRIM54-204ENST00000488321 KLRG2A4D1S0 409 aaPredicted RBP19.28■□□□□ 0.68
TRIM54-204ENST00000488321 RASSF7Q02833 373 aa19.28■□□□□ 0.68
TRIM54-204ENST00000488321 C9orf131Q5VYM1 1079 aa19.28■□□□□ 0.68
TRIM54-204ENST00000488321 MYH16Q9H6N6 1097 aa19.28■□□□□ 0.68
TRIM54-204ENST00000488321 SPINK5Q9NQ38 1064 aaPredicted RBP19.28■□□□□ 0.68
TRIM54-204ENST00000488321 TRMT112Q9UI30 125 aaKnown RBP19.28■□□□□ 0.68
TRIM54-204ENST00000488321 ATP5J2-PTCD1G3V325 749 aa19.27■□□□□ 0.68
TRIM54-204ENST00000488321 EXOSC9Q06265 439 aaKnown RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms