RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 CNKSR1Q969H4 720 aa29.75■■■□□ 2.35
PTPN4-211ENST00000488279 C21orf2O43822 256 aa29.74■■■□□ 2.35
PTPN4-211ENST00000488279 SRGNP10124 158 aa29.74■■■□□ 2.35
PTPN4-211ENST00000488279 STYK1Q6J9G0 422 aa29.74■■■□□ 2.35
PTPN4-211ENST00000488279 NGEFQ8N5V2 710 aa29.74■■■□□ 2.35
PTPN4-211ENST00000488279 RRP7AQ9Y3A4 280 aaKnown RBP29.74■■■□□ 2.35
PTPN4-211ENST00000488279 ZC3H4Q9UPT8 1303 aaKnown RBP29.73■■■□□ 2.35
PTPN4-211ENST00000488279 DLG5Q8TDM6 1919 aa29.73■■■□□ 2.35
PTPN4-211ENST00000488279 C16orf71Q8IYS4 520 aaPredicted RBP29.73■■■□□ 2.35
PTPN4-211ENST00000488279 MASTLQ96GX5 879 aa29.73■■■□□ 2.35
PTPN4-211ENST00000488279 TSPYL4Q9UJ04 414 aa29.73■■■□□ 2.35
PTPN4-211ENST00000488279 DLEC1Q9Y238 1755 aa29.72■■■□□ 2.35
PTPN4-211ENST00000488279 TMPOP42166 694 aaKnown RBP29.72■■■□□ 2.35
PTPN4-211ENST00000488279 LMOD3Q0VAK6 560 aa29.72■■■□□ 2.35
PTPN4-211ENST00000488279 HLFQ16534 295 aa29.72■■■□□ 2.35
PTPN4-211ENST00000488279 ZNF219Q9P2Y4 722 aaPredicted RBP29.72■■■□□ 2.35
PTPN4-211ENST00000488279 NFKBIEO00221 500 aa29.71■■■□□ 2.35
PTPN4-211ENST00000488279 PRELPP51888 382 aa29.71■■■□□ 2.35
PTPN4-211ENST00000488279 BCORQ6W2J9 1755 aa29.71■■■□□ 2.35
PTPN4-211ENST00000488279 ERVV-1B6SEH8 477 aa29.7■■■□□ 2.35
PTPN4-211ENST00000488279 RRAGCQ9HB90 399 aa29.7■■■□□ 2.35
PTPN4-211ENST00000488279 BABAM1Q9NWV8 329 aa29.7■■■□□ 2.35
PTPN4-211ENST00000488279 ANKRD31Q8N7Z5 1873 aa29.7■■■□□ 2.34
PTPN4-211ENST00000488279 FAM177BA6PVY3 158 aa29.69■■■□□ 2.34
PTPN4-211ENST00000488279 MYL6BP14649 208 aa29.69■■■□□ 2.34
PTPN4-211ENST00000488279 KIF6Q6ZMV9 814 aa29.69■■■□□ 2.34
PTPN4-211ENST00000488279 GTF2E1P29083 439 aaPredicted RBP29.68■■■□□ 2.34
PTPN4-211ENST00000488279 WDR43Q15061 677 aaKnown RBP eCLIP29.68■■■□□ 2.34
PTPN4-211ENST00000488279 PRPF40BQ6NWY9 871 aaKnown RBP29.68■■■□□ 2.34
PTPN4-211ENST00000488279 SBF1O95248 1867 aa29.68■■■□□ 2.34
PTPN4-211ENST00000488279 KDM3BQ7LBC6 1761 aa29.67■■■□□ 2.34
PTPN4-211ENST00000488279 CCDC146Q8IYE0 955 aa29.67■■■□□ 2.34
PTPN4-211ENST00000488279 RBM46Q8TBY0 533 aaKnown RBP29.67■■■□□ 2.34
PTPN4-211ENST00000488279 MAP3K15Q6ZN16 1313 aa29.67■■■□□ 2.34
PTPN4-211ENST00000488279 KLRG2A4D1S0 409 aaPredicted RBP29.66■■■□□ 2.34
PTPN4-211ENST00000488279 NPR1P16066 1061 aa29.66■■■□□ 2.34
PTPN4-211ENST00000488279 NEUROD2Q15784 382 aa29.66■■■□□ 2.34
PTPN4-211ENST00000488279 SOGA3Q5TF21 947 aa29.66■■■□□ 2.34
PTPN4-211ENST00000488279 TTLL7Q6ZT98 887 aa29.66■■■□□ 2.34
PTPN4-211ENST00000488279 GLTPD2A6NH11 291 aa29.65■■■□□ 2.34
PTPN4-211ENST00000488279 RUNDC1Q96C34 613 aa29.65■■■□□ 2.34
PTPN4-211ENST00000488279 ERBB4Q15303 1308 aa29.65■■■□□ 2.34
PTPN4-211ENST00000488279 NYXQ9GZU5 481 aa29.64■■■□□ 2.34
PTPN4-211ENST00000488279 LAMB4A4D0S4 1761 aa29.63■■■□□ 2.33
PTPN4-211ENST00000488279 APLP1P51693 650 aa29.63■■■□□ 2.33
PTPN4-211ENST00000488279 TAOK3Q9H2K8 898 aa29.63■■■□□ 2.33
PTPN4-211ENST00000488279 EIF2S2P20042 333 aaKnown RBP29.62■■■□□ 2.33
PTPN4-211ENST00000488279 ERFEQ4G0M1 354 aa29.62■■■□□ 2.33
PTPN4-211ENST00000488279 ADAMTS8Q9UP79 889 aa29.62■■■□□ 2.33
PTPN4-211ENST00000488279 DPY19L2Q6NUT2 758 aa29.61■■■□□ 2.33
PTPN4-211ENST00000488279 ZBTB3Q9H5J0 574 aa29.61■■■□□ 2.33
PTPN4-211ENST00000488279 PRKRIP1Q9H875 184 aaPredicted RBP29.61■■■□□ 2.33
PTPN4-211ENST00000488279 COL11A2P13942 1736 aaPredicted RBP29.61■■■□□ 2.33
PTPN4-211ENST00000488279 LTBP3Q9NS15 1303 aa29.61■■■□□ 2.33
PTPN4-211ENST00000488279 FSTL1Q12841 308 aa29.6■■■□□ 2.33
PTPN4-211ENST00000488279 VEGFAP15692 232 aaPredicted RBP29.59■■■□□ 2.33
PTPN4-211ENST00000488279 C7orf43Q8WVR3 580 aa29.59■■■□□ 2.33
PTPN4-211ENST00000488279 ALDH1B1P30837 517 aa29.58■■■□□ 2.33
PTPN4-211ENST00000488279 GPTP24298 496 aa29.57■■■□□ 2.32
PTPN4-211ENST00000488279 CCDC93Q567U6 631 aa29.57■■■□□ 2.32
PTPN4-211ENST00000488279 NUTM1Q86Y26 1132 aa29.57■■■□□ 2.32
PTPN4-211ENST00000488279 TRIM35Q9UPQ4 493 aa29.57■■■□□ 2.32
PTPN4-211ENST00000488279 CHL1O00533 1208 aa29.56■■■□□ 2.32
PTPN4-211ENST00000488279 PDIA6Q15084 440 aa29.56■■■□□ 2.32
PTPN4-211ENST00000488279 GIGYF2Q6Y7W6 1299 aaKnown RBP29.56■■■□□ 2.32
PTPN4-211ENST00000488279 LAS1LQ9Y4W2 734 aaKnown RBP29.56■■■□□ 2.32
PTPN4-211ENST00000488279 SLX4Q8IY92 1834 aa29.56■■■□□ 2.32
PTPN4-211ENST00000488279 LRP10Q7Z4F1 713 aa29.55■■■□□ 2.32
PTPN4-211ENST00000488279 ZNF34Q8IZ26 560 aa29.55■■■□□ 2.32
PTPN4-211ENST00000488279 SUSD4Q5VX71 490 aa29.54■■■□□ 2.32
PTPN4-211ENST00000488279 UBN2Q6ZU65 1347 aa29.53■■■□□ 2.32
PTPN4-211ENST00000488279 RTKN2Q8IZC4 609 aa29.53■■■□□ 2.32
PTPN4-211ENST00000488279 SMC1BQ8NDV3 1235 aa29.53■■■□□ 2.32
PTPN4-211ENST00000488279 PROSER3Q2NL68 480 aa29.52■■■□□ 2.32
PTPN4-211ENST00000488279 CRY2Q49AN0 593 aa29.52■■■□□ 2.32
PTPN4-211ENST00000488279 PPP1R42Q7Z4L9 355 aa29.52■■■□□ 2.32
PTPN4-211ENST00000488279 NECTIN2Q92692 538 aa29.52■■■□□ 2.32
PTPN4-211ENST00000488279 TNRC6CQ9HCJ0 1690 aaKnown RBP29.52■■■□□ 2.32
PTPN4-211ENST00000488279 FER1L6Q2WGJ9 1857 aa29.52■■■□□ 2.32
PTPN4-211ENST00000488279 ANXA1P04083 346 aa29.51■■■□□ 2.31
PTPN4-211ENST00000488279 ABCC12Q96J65 1359 aa29.51■■■□□ 2.31
PTPN4-211ENST00000488279 IBTKQ9P2D0 1353 aaPredicted RBP29.51■■■□□ 2.31
PTPN4-211ENST00000488279 FKBP4Q02790 459 aaKnown RBP eCLIP29.5■■■□□ 2.31
PTPN4-211ENST00000488279 PARP10Q53GL7 1025 aa29.5■■■□□ 2.31
PTPN4-211ENST00000488279 RPGRQ92834 1020 aaKnown RBP29.5■■■□□ 2.31
PTPN4-211ENST00000488279 CCDC88AQ3V6T2 1871 aa29.49■■■□□ 2.31
PTPN4-211ENST00000488279 OLFM4Q6UX06 510 aa29.49■■■□□ 2.31
PTPN4-211ENST00000488279 COPS6Q7L5N1 327 aa29.49■■■□□ 2.31
PTPN4-211ENST00000488279 NUP98P52948 1817 aa29.48■■■□□ 2.31
PTPN4-211ENST00000488279 POTECB2RU33 542 aa29.48■■■□□ 2.31
PTPN4-211ENST00000488279 NTSR2O95665 410 aa29.48■■■□□ 2.31
PTPN4-211ENST00000488279 HOXA10P31260 410 aaPredicted RBP29.47■■■□□ 2.31
PTPN4-211ENST00000488279 AIMP1Q12904 312 aaKnown RBP29.47■■■□□ 2.31
PTPN4-211ENST00000488279 KRT24Q2M2I5 525 aa29.47■■■□□ 2.31
PTPN4-211ENST00000488279 DNAJC5GQ8N7S2 189 aa29.47■■■□□ 2.31
PTPN4-211ENST00000488279 DDX21Q9NR30 783 aaKnown RBP eCLIP29.47■■■□□ 2.31
PTPN4-211ENST00000488279 TIAM2Q8IVF5 1701 aa29.46■■■□□ 2.31
PTPN4-211ENST00000488279 XAGE3Q8WTP9 111 aa29.46■■■□□ 2.31
PTPN4-211ENST00000488279 CFAP44Q96MT7 982 aa29.46■■■□□ 2.31
PTPN4-211ENST00000488279 UTP14AQ9BVJ6 771 aaKnown RBP29.46■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms