RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 RSPH6AQ9H0K4 717 aa26.11■■□□□ 1.77
SMPDL3A-202ENST00000487215 DICER1Q9UPY3 1922 aaKnown RBP26.11■■□□□ 1.77
SMPDL3A-202ENST00000487215 PRPF40BQ6NWY9 871 aaKnown RBP26.1■■□□□ 1.77
SMPDL3A-202ENST00000487215 USP16Q9Y5T5 823 aa26.1■■□□□ 1.77
SMPDL3A-202ENST00000487215 HSPA1AP0DMV8 641 aaKnown RBP26.09■■□□□ 1.77
SMPDL3A-202ENST00000487215 HSPA1BP0DMV9 641 aaKnown RBP26.09■■□□□ 1.77
SMPDL3A-202ENST00000487215 PIP4K2AP48426 406 aaPredicted RBP26.09■■□□□ 1.77
SMPDL3A-202ENST00000487215 SLX4Q8IY92 1834 aa26.09■■□□□ 1.77
SMPDL3A-202ENST00000487215 PCNTO95613 3336 aa26.09■■□□□ 1.77
SMPDL3A-202ENST00000487215 TNS4Q8IZW8 715 aa26.08■■□□□ 1.77
SMPDL3A-202ENST00000487215 MASTLQ96GX5 879 aa26.08■■□□□ 1.77
SMPDL3A-202ENST00000487215 ARFGEF2Q9Y6D5 1785 aa26.07■■□□□ 1.76
SMPDL3A-202ENST00000487215 PRAMEF22A3QJZ6 481 aa26.07■■□□□ 1.76
SMPDL3A-202ENST00000487215 CACNA1SQ13698 1873 aa26.06■■□□□ 1.76
SMPDL3A-202ENST00000487215 DDNO94850 711 aaPredicted RBP26.06■■□□□ 1.76
SMPDL3A-202ENST00000487215 SOGA3Q5TF21 947 aa26.06■■□□□ 1.76
SMPDL3A-202ENST00000487215 CFAP53Q96M91 514 aa26.06■■□□□ 1.76
SMPDL3A-202ENST00000487215 CAPN15O75808 1086 aa26.05■■□□□ 1.76
SMPDL3A-202ENST00000487215 CHADLQ6NUI6 762 aa26.05■■□□□ 1.76
SMPDL3A-202ENST00000487215 POTEIP0CG38 1075 aa26.04■■□□□ 1.76
SMPDL3A-202ENST00000487215 POTEJP0CG39 1038 aa26.04■■□□□ 1.76
SMPDL3A-202ENST00000487215 CLEC4GQ6UXB4 293 aa26.04■■□□□ 1.76
SMPDL3A-202ENST00000487215 NBPF5PQ86XG9 351 aaPredicted RBP26.04■■□□□ 1.76
SMPDL3A-202ENST00000487215 MCM10Q7L590 875 aa26.03■■□□□ 1.76
SMPDL3A-202ENST00000487215 SNRPA1P09661 255 aaKnown RBP26.02■■□□□ 1.76
SMPDL3A-202ENST00000487215 C7orf43Q8WVR3 580 aa26.02■■□□□ 1.76
SMPDL3A-202ENST00000487215 ZNF652Q9Y2D9 606 aa26.02■■□□□ 1.76
SMPDL3A-202ENST00000487215 RTF1Q92541 710 aaKnown RBP26.01■■□□□ 1.75
SMPDL3A-202ENST00000487215 CREBZFQ9NS37 354 aa26.01■■□□□ 1.75
SMPDL3A-202ENST00000487215 NUDCQ9Y266 331 aa26.01■■□□□ 1.75
SMPDL3A-202ENST00000487215 CCDC93Q567U6 631 aa26■■□□□ 1.75
SMPDL3A-202ENST00000487215 NBPF26B4DH59 902 aa25.99■■□□□ 1.75
SMPDL3A-202ENST00000487215 U2AF1L5P0DN76 240 aaPredicted RBP25.99■■□□□ 1.75
SMPDL3A-202ENST00000487215 NPR1P16066 1061 aa25.99■■□□□ 1.75
SMPDL3A-202ENST00000487215 U2AF1Q01081 240 aaKnown RBP eCLIP25.99■■□□□ 1.75
SMPDL3A-202ENST00000487215 NBPF10Q6P3W6 841 aaKnown RBP25.99■■□□□ 1.75
SMPDL3A-202ENST00000487215 NBPF15Q8N660 670 aa25.99■■□□□ 1.75
SMPDL3A-202ENST00000487215 KLRG2A4D1S0 409 aaPredicted RBP25.98■■□□□ 1.75
SMPDL3A-202ENST00000487215 DCTN1Q14203 1278 aa25.98■■□□□ 1.75
SMPDL3A-202ENST00000487215 L3MBTL3Q96JM7 780 aaPredicted RBP25.98■■□□□ 1.75
SMPDL3A-202ENST00000487215 MKRN1Q9UHC7 482 aaKnown RBP25.98■■□□□ 1.75
SMPDL3A-202ENST00000487215 IQCA1LA6NCM1 817 aa25.97■■□□□ 1.75
SMPDL3A-202ENST00000487215 NIP7Q9Y221 180 aaKnown RBP eCLIP25.97■■□□□ 1.75
SMPDL3A-202ENST00000487215 RGL2O15211 777 aa25.96■■□□□ 1.75
SMPDL3A-202ENST00000487215 FKBP4Q02790 459 aaKnown RBP eCLIP25.96■■□□□ 1.75
SMPDL3A-202ENST00000487215 TPTE2Q6XPS3 522 aa25.96■■□□□ 1.75
SMPDL3A-202ENST00000487215 TAF1DQ9H5J8 278 aaPredicted RBP25.96■■□□□ 1.75
SMPDL3A-202ENST00000487215 PPP2R1AP30153 589 aa25.95■■□□□ 1.74
SMPDL3A-202ENST00000487215 OLFM4Q6UX06 510 aa25.95■■□□□ 1.74
SMPDL3A-202ENST00000487215 LDHDQ86WU2 507 aa25.95■■□□□ 1.74
SMPDL3A-202ENST00000487215 ZNF277Q9NRM2 450 aaPredicted RBP25.95■■□□□ 1.74
SMPDL3A-202ENST00000487215 ZNF541Q9H0D2 1346 aa25.94■■□□□ 1.74
SMPDL3A-202ENST00000487215 FAM177BA6PVY3 158 aa25.94■■□□□ 1.74
SMPDL3A-202ENST00000487215 SCN4AP35499 1836 aa25.93■■□□□ 1.74
SMPDL3A-202ENST00000487215 PASKQ96RG2 1323 aa25.93■■□□□ 1.74
SMPDL3A-202ENST00000487215 HTATSF1O43719 755 aaKnown RBP25.93■■□□□ 1.74
SMPDL3A-202ENST00000487215 HLFQ16534 295 aa25.93■■□□□ 1.74
SMPDL3A-202ENST00000487215 CNTNAP1P78357 1384 aa25.92■■□□□ 1.74
SMPDL3A-202ENST00000487215 TAF7Q15545 349 aaPredicted RBP25.9■■□□□ 1.74
SMPDL3A-202ENST00000487215 RTKN2Q8IZC4 609 aa25.9■■□□□ 1.74
SMPDL3A-202ENST00000487215 LAMB4A4D0S4 1761 aa25.9■■□□□ 1.74
SMPDL3A-202ENST00000487215 MIS18AQ9NYP9 233 aa25.89■■□□□ 1.74
SMPDL3A-202ENST00000487215 ALDH1B1P30837 517 aa25.88■■□□□ 1.73
SMPDL3A-202ENST00000487215 EAPPQ56P03 285 aaPredicted RBP25.88■■□□□ 1.73
SMPDL3A-202ENST00000487215 HACL1Q9UJ83 578 aa25.88■■□□□ 1.73
SMPDL3A-202ENST00000487215 ABCC12Q96J65 1359 aa25.87■■□□□ 1.73
SMPDL3A-202ENST00000487215 ITGBL1O95965 494 aaPredicted RBP25.87■■□□□ 1.73
SMPDL3A-202ENST00000487215 GTF2E1P29083 439 aaPredicted RBP25.87■■□□□ 1.73
SMPDL3A-202ENST00000487215 IARSP41252 1262 aaKnown RBP25.87■■□□□ 1.73
SMPDL3A-202ENST00000487215 SYNE4Q8N205 404 aa25.87■■□□□ 1.73
SMPDL3A-202ENST00000487215 SNED1Q8TER0 1413 aa25.87■■□□□ 1.73
SMPDL3A-202ENST00000487215 ADAMTSL1Q8N6G6 1762 aa25.87■■□□□ 1.73
SMPDL3A-202ENST00000487215 EPHX2P34913 555 aa25.86■■□□□ 1.73
SMPDL3A-202ENST00000487215 TMEM88BA6NKF7 163 aa25.85■■□□□ 1.73
SMPDL3A-202ENST00000487215 FZD9O00144 591 aa25.85■■□□□ 1.73
SMPDL3A-202ENST00000487215 FOXN1O15353 648 aa25.85■■□□□ 1.73
SMPDL3A-202ENST00000487215 CRY2Q49AN0 593 aa25.85■■□□□ 1.73
SMPDL3A-202ENST00000487215 RNF123Q5XPI4 1314 aa25.85■■□□□ 1.73
SMPDL3A-202ENST00000487215 NUTM1Q86Y26 1132 aa25.84■■□□□ 1.73
SMPDL3A-202ENST00000487215 NGEFQ8N5V2 710 aa25.84■■□□□ 1.73
SMPDL3A-202ENST00000487215 CLEC11AQ9Y240 323 aa25.84■■□□□ 1.73
SMPDL3A-202ENST00000487215 KDM3BQ7LBC6 1761 aa25.83■■□□□ 1.73
SMPDL3A-202ENST00000487215 NYXQ9GZU5 481 aa25.83■■□□□ 1.73
SMPDL3A-202ENST00000487215 ERVV-1B6SEH8 477 aa25.82■■□□□ 1.72
SMPDL3A-202ENST00000487215 VEGFBP49765 207 aa25.82■■□□□ 1.72
SMPDL3A-202ENST00000487215 PSMD1Q99460 953 aa25.82■■□□□ 1.72
SMPDL3A-202ENST00000487215 MAP3K15Q6ZN16 1313 aa25.82■■□□□ 1.72
SMPDL3A-202ENST00000487215 PNMA8AQ86V59 439 aaPredicted RBP25.81■■□□□ 1.72
SMPDL3A-202ENST00000487215 GPC2Q8N158 579 aa25.81■■□□□ 1.72
SMPDL3A-202ENST00000487215 PNISRQ8TF01 805 aaKnown RBP25.81■■□□□ 1.72
SMPDL3A-202ENST00000487215 MAP1SQ66K74 1059 aaPredicted RBP25.8■■□□□ 1.72
SMPDL3A-202ENST00000487215 TTLL7Q6ZT98 887 aa25.8■■□□□ 1.72
SMPDL3A-202ENST00000487215 COL4A5P29400 1685 aa25.8■■□□□ 1.72
SMPDL3A-202ENST00000487215 EIF4A1P60842 406 aaKnown RBP25.79■■□□□ 1.72
SMPDL3A-202ENST00000487215 CC2D2BQ6DHV5 1058 aa25.79■■□□□ 1.72
SMPDL3A-202ENST00000487215 KIF6Q6ZMV9 814 aa25.79■■□□□ 1.72
SMPDL3A-202ENST00000487215 JDP2Q8WYK2 163 aa25.79■■□□□ 1.72
SMPDL3A-202ENST00000487215 RRP7AQ9Y3A4 280 aaKnown RBP25.79■■□□□ 1.72
SMPDL3A-202ENST00000487215 UBN2Q6ZU65 1347 aa25.79■■□□□ 1.72
SMPDL3A-202ENST00000487215 RIC1Q4ADV7 1423 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms