RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 VPS53Q5VIR6 699 aa14.62□□□□□ -0.07
COL3A1-206ENST00000487010 GIMAP6Q6P9H5 292 aa14.62□□□□□ -0.07
COL3A1-206ENST00000487010 CCDC83Q8IWF9 413 aa14.62□□□□□ -0.07
COL3A1-206ENST00000487010 RUFY2Q8WXA3 655 aa14.62□□□□□ -0.07
COL3A1-206ENST00000487010 ZSCAN31Q96LW9 406 aaPredicted RBP14.62□□□□□ -0.07
COL3A1-206ENST00000487010 PDRG1Q9NUG6 133 aa14.62□□□□□ -0.07
COL3A1-206ENST00000487010 AMOTL2Q9Y2J4 779 aa14.62□□□□□ -0.07
COL3A1-206ENST00000487010 ZBTB7CA1YPR0 619 aa14.61□□□□□ -0.07
COL3A1-206ENST00000487010 NLRP6P59044 892 aa14.61□□□□□ -0.07
COL3A1-206ENST00000487010 DNM1Q05193 864 aaKnown RBP14.61□□□□□ -0.07
COL3A1-206ENST00000487010 KCNB2Q92953 911 aa14.61□□□□□ -0.07
COL3A1-206ENST00000487010 TM6SF1Q9BZW5 370 aa14.61□□□□□ -0.07
COL3A1-206ENST00000487010 DIAPH3Q9NSV4 1193 aa14.61□□□□□ -0.07
COL3A1-206ENST00000487010 PTH1RQ03431 593 aa14.61□□□□□ -0.07
COL3A1-206ENST00000487010 C17orf53Q8N3J3 647 aaPredicted RBP14.61□□□□□ -0.07
COL3A1-206ENST00000487010 ZSWIM6Q9HCJ5 1215 aa14.61□□□□□ -0.07
COL3A1-206ENST00000487010 SH2B1Q9NRF2 756 aaPredicted RBP14.61□□□□□ -0.07
COL3A1-206ENST00000487010 EIF2S2P20042 333 aaKnown RBP14.6□□□□□ -0.07
COL3A1-206ENST00000487010 DNAAF4Q8WXU2 420 aa14.6□□□□□ -0.07
COL3A1-206ENST00000487010 JAKMIP1Q96N16 626 aaKnown RBP14.6□□□□□ -0.07
COL3A1-206ENST00000487010 DIP2AQ14689 1571 aa14.59□□□□□ -0.07
COL3A1-206ENST00000487010 AP5Z1O43299 807 aa14.59□□□□□ -0.07
COL3A1-206ENST00000487010 EIF4A1P60842 406 aaKnown RBP14.59□□□□□ -0.07
COL3A1-206ENST00000487010 ADCK5Q3MIX3 580 aa14.59□□□□□ -0.07
COL3A1-206ENST00000487010 CYP46A1Q9Y6A2 500 aa14.59□□□□□ -0.07
COL3A1-206ENST00000487010 MARF1Q9Y4F3 1742 aaKnown RBP14.59□□□□□ -0.07
COL3A1-206ENST00000487010 PI4KAP2A4QPH2 592 aa14.59□□□□□ -0.07
COL3A1-206ENST00000487010 PRPF40BQ6NWY9 871 aaKnown RBP14.59□□□□□ -0.07
COL3A1-206ENST00000487010 PI4KAP1Q8N8J0 262 aa14.59□□□□□ -0.07
COL3A1-206ENST00000487010 CCDC94Q9BW85 323 aaPredicted RBP14.59□□□□□ -0.07
COL3A1-206ENST00000487010 CEMIPQ8WUJ3 1361 aa14.59□□□□□ -0.07
COL3A1-206ENST00000487010 TPM3P06753 285 aa14.58□□□□□ -0.08
COL3A1-206ENST00000487010 HOXB7P09629 217 aa14.58□□□□□ -0.08
COL3A1-206ENST00000487010 ST3GAL1Q11201 340 aa14.58□□□□□ -0.08
COL3A1-206ENST00000487010 OS9Q13438 667 aaPredicted RBP14.58□□□□□ -0.08
COL3A1-206ENST00000487010 SMAP1Q8IYB5 467 aaPredicted RBP14.58□□□□□ -0.08
COL3A1-206ENST00000487010 CLASRPQ8N2M8 674 aaKnown RBP14.58□□□□□ -0.08
COL3A1-206ENST00000487010 JARID2Q92833 1246 aaPredicted RBP14.58□□□□□ -0.08
COL3A1-206ENST00000487010 LTV1Q96GA3 475 aaPredicted RBP14.58□□□□□ -0.08
COL3A1-206ENST00000487010 CHPF2Q9P2E5 772 aa14.58□□□□□ -0.08
COL3A1-206ENST00000487010 EID1Q9Y6B2 187 aa14.58□□□□□ -0.08
COL3A1-206ENST00000487010 PLCB2Q00722 1185 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 MTX1Q13505 466 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 NECTIN1Q15223 517 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 ZNF710Q8N1W2 664 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 ARID3AQ99856 593 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 ECHDC1Q9NTX5 307 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 CHD2O14647 1828 aaKnown RBP14.57□□□□□ -0.08
COL3A1-206ENST00000487010 CCDC192P0DO97 292 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 ME3Q16798 604 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 NUTM2GQ5VZR2 741 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 KIAA1524Q8TCG1 905 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 CHMP4AQ9BY43 222 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 KCNF1Q9H3M0 494 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 PRDM4Q9UKN5 801 aa14.57□□□□□ -0.08
COL3A1-206ENST00000487010 USP54Q70EL1 1684 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 MED1Q15648 1581 aaPredicted RBP14.56□□□□□ -0.08
COL3A1-206ENST00000487010 VPS37CA5D8V6 355 aaPredicted RBP14.56□□□□□ -0.08
COL3A1-206ENST00000487010 DTNBO60941 627 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 TSC1Q92574 1164 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 KDM3BQ7LBC6 1761 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 ADCY9O60503 1353 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 CCDC171Q6TFL3 1326 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 PDIA4P13667 645 aaKnown RBP14.56□□□□□ -0.08
COL3A1-206ENST00000487010 USHBP1Q8N6Y0 703 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 EVI5LQ96CN4 794 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 GPATCH3Q96I76 525 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 TBX22Q9Y458 520 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 KIF3AQ9Y496 699 aa14.56□□□□□ -0.08
COL3A1-206ENST00000487010 ZKSCAN1P17029 563 aaPredicted RBP14.55□□□□□ -0.08
COL3A1-206ENST00000487010 NECAB1Q8N987 351 aa14.55□□□□□ -0.08
COL3A1-206ENST00000487010 TPCN1Q9ULQ1 816 aa14.55□□□□□ -0.08
COL3A1-206ENST00000487010 PYCARDQ9ULZ3 195 aa14.55□□□□□ -0.08
COL3A1-206ENST00000487010 GOLGA6L6A8MZA4 724 aa14.54□□□□□ -0.08
COL3A1-206ENST00000487010 IFIT2P09913 472 aaKnown RBP14.54□□□□□ -0.08
COL3A1-206ENST00000487010 KRT85P78386 507 aa14.54□□□□□ -0.08
COL3A1-206ENST00000487010 LARP1BQ659C4 914 aaKnown RBP14.54□□□□□ -0.08
COL3A1-206ENST00000487010 LGR6Q9HBX8 967 aa14.54□□□□□ -0.08
COL3A1-206ENST00000487010 RBM8AQ9Y5S9 174 aaKnown RBP14.54□□□□□ -0.08
COL3A1-206ENST00000487010 ELP1O95163 1332 aa14.54□□□□□ -0.08
COL3A1-206ENST00000487010 CREB3L3Q68CJ9 461 aa14.54□□□□□ -0.08
COL3A1-206ENST00000487010 TTC6Q86TZ1 520 aa14.54□□□□□ -0.08
COL3A1-206ENST00000487010 ERC1Q8IUD2 1116 aa14.54□□□□□ -0.08
COL3A1-206ENST00000487010 KCNQ3O43525 872 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 ANXA1P04083 346 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 SPC24Q8NBT2 197 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 FAM200AQ8TCP9 573 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 DDX54Q8TDD1 881 aaKnown RBP14.53□□□□□ -0.08
COL3A1-206ENST00000487010 MAP4K1Q92918 833 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 KIF13AQ9H1H9 1805 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 ALDH1L1O75891 902 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 PSMA5P28066 241 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 CEBPAP49715 358 aaPredicted RBP14.53□□□□□ -0.08
COL3A1-206ENST00000487010 MAP3K11Q16584 847 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 ABTB2Q8N961 1025 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 NUP62CLQ9H1M0 184 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 PA2G4Q9UQ80 394 aaKnown RBP14.53□□□□□ -0.08
COL3A1-206ENST00000487010 ANKARQ7Z5J8 1434 aa14.53□□□□□ -0.08
COL3A1-206ENST00000487010 HIP1O00291 1037 aa14.52□□□□□ -0.09
COL3A1-206ENST00000487010 LIG1P18858 919 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms