RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 ERBB4Q15303 1308 aa16.83■□□□□ 0.28
CHMP3-208ENST00000486404 NGEFQ8N5V2 710 aa16.83■□□□□ 0.28
CHMP3-208ENST00000486404 ATP10DQ9P241 1426 aa16.83■□□□□ 0.28
CHMP3-208ENST00000486404 CLEC4GQ6UXB4 293 aa16.82■□□□□ 0.28
CHMP3-208ENST00000486404 NBPF5PQ86XG9 351 aaPredicted RBP16.82■□□□□ 0.28
CHMP3-208ENST00000486404 C2CD5Q86YS7 1000 aa16.82■□□□□ 0.28
CHMP3-208ENST00000486404 MRS2Q9HD23 443 aa16.82■□□□□ 0.28
CHMP3-208ENST00000486404 TRIM35Q9UPQ4 493 aa16.82■□□□□ 0.28
CHMP3-208ENST00000486404 H0YIN7 160 aa16.81■□□□□ 0.28
CHMP3-208ENST00000486404 APAF1O14727 1248 aa16.81■□□□□ 0.28
CHMP3-208ENST00000486404 CALD1Q05682 793 aaKnown RBP16.81■□□□□ 0.28
CHMP3-208ENST00000486404 PRR5LQ6MZQ0 368 aa16.81■□□□□ 0.28
CHMP3-208ENST00000486404 ARHGAP27Q6ZUM4 889 aa16.81■□□□□ 0.28
CHMP3-208ENST00000486404 ADCY9O60503 1353 aa16.8■□□□□ 0.28
CHMP3-208ENST00000486404 RGL2O15211 777 aa16.8■□□□□ 0.28
CHMP3-208ENST00000486404 EIF2S2P20042 333 aaKnown RBP16.8■□□□□ 0.28
CHMP3-208ENST00000486404 KCNA3P22001 575 aa16.8■□□□□ 0.28
CHMP3-208ENST00000486404 PDE6BP35913 854 aa16.8■□□□□ 0.28
CHMP3-208ENST00000486404 NIP7Q9Y221 180 aaKnown RBP eCLIP16.8■□□□□ 0.28
CHMP3-208ENST00000486404 TIAM2Q8IVF5 1701 aa16.79■□□□□ 0.28
CHMP3-208ENST00000486404 CCDC24Q8N4L8 307 aa16.79■□□□□ 0.28
CHMP3-208ENST00000486404 PDZRN3Q9UPQ7 1066 aa16.79■□□□□ 0.28
CHMP3-208ENST00000486404 TNRC6CQ9HCJ0 1690 aaKnown RBP16.78■□□□□ 0.28
CHMP3-208ENST00000486404 SBF1O95248 1867 aa16.78■□□□□ 0.28
CHMP3-208ENST00000486404 MAP3K15Q6ZN16 1313 aa16.78■□□□□ 0.28
CHMP3-208ENST00000486404 CHL1O00533 1208 aa16.78■□□□□ 0.28
CHMP3-208ENST00000486404 NECTIN2Q92692 538 aa16.78■□□□□ 0.28
CHMP3-208ENST00000486404 BRIP1Q9BX63 1249 aa16.78■□□□□ 0.28
CHMP3-208ENST00000486404 CCDC88AQ3V6T2 1871 aa16.78■□□□□ 0.28
CHMP3-208ENST00000486404 FAM177BA6PVY3 158 aa16.77■□□□□ 0.28
CHMP3-208ENST00000486404 GTF2E1P29083 439 aaPredicted RBP16.77■□□□□ 0.28
CHMP3-208ENST00000486404 CCDC184Q52MB2 194 aa16.77■□□□□ 0.28
CHMP3-208ENST00000486404 TTLL6Q8N841 843 aa16.77■□□□□ 0.28
CHMP3-208ENST00000486404 ZNF622Q969S3 477 aaKnown RBP eCLIP16.77■□□□□ 0.28
CHMP3-208ENST00000486404 ZBTB3Q9H5J0 574 aa16.77■□□□□ 0.28
CHMP3-208ENST00000486404 ERVV-1B6SEH8 477 aa16.76■□□□□ 0.27
CHMP3-208ENST00000486404 HLFQ16534 295 aa16.76■□□□□ 0.27
CHMP3-208ENST00000486404 TTLL7Q6ZT98 887 aa16.76■□□□□ 0.27
CHMP3-208ENST00000486404 ZNF526Q8TF50 670 aaPredicted RBP16.76■□□□□ 0.27
CHMP3-208ENST00000486404 CFAP44Q96MT7 982 aa16.76■□□□□ 0.27
CHMP3-208ENST00000486404 HOXB7P09629 217 aa16.75■□□□□ 0.27
CHMP3-208ENST00000486404 GNAI1P63096 354 aa16.75■□□□□ 0.27
CHMP3-208ENST00000486404 HDGFL1Q5TGJ6 251 aa16.75■□□□□ 0.27
CHMP3-208ENST00000486404 TPTE2Q6XPS3 522 aa16.75■□□□□ 0.27
CHMP3-208ENST00000486404 GPBP1L1Q9HC44 474 aaPredicted RBP16.75■□□□□ 0.27
CHMP3-208ENST00000486404 IFT57Q9NWB7 429 aa16.75■□□□□ 0.27
CHMP3-208ENST00000486404 SLX4Q8IY92 1834 aa16.75■□□□□ 0.27
CHMP3-208ENST00000486404 FER1L6Q2WGJ9 1857 aa16.74■□□□□ 0.27
CHMP3-208ENST00000486404 KRT24Q2M2I5 525 aa16.74■□□□□ 0.27
CHMP3-208ENST00000486404 NYXQ9GZU5 481 aa16.74■□□□□ 0.27
CHMP3-208ENST00000486404 MBIPQ9NS73 344 aa16.74■□□□□ 0.27
CHMP3-208ENST00000486404 IBTKQ9P2D0 1353 aaPredicted RBP16.74■□□□□ 0.27
CHMP3-208ENST00000486404 ANXA1P04083 346 aa16.73■□□□□ 0.27
CHMP3-208ENST00000486404 GPTP24298 496 aa16.73■□□□□ 0.27
CHMP3-208ENST00000486404 PROSER3Q2NL68 480 aa16.73■□□□□ 0.27
CHMP3-208ENST00000486404 AIMP1Q12904 312 aaKnown RBP16.72■□□□□ 0.27
CHMP3-208ENST00000486404 C9orf131Q5VYM1 1079 aa16.72■□□□□ 0.27
CHMP3-208ENST00000486404 CHPF2Q9P2E5 772 aa16.72■□□□□ 0.27
CHMP3-208ENST00000486404 DICER1Q9UPY3 1922 aaKnown RBP16.71■□□□□ 0.27
CHMP3-208ENST00000486404 PDIA6Q15084 440 aa16.71■□□□□ 0.27
CHMP3-208ENST00000486404 DUSP27Q5VZP5 1158 aa16.71■□□□□ 0.27
CHMP3-208ENST00000486404 STYK1Q6J9G0 422 aa16.71■□□□□ 0.27
CHMP3-208ENST00000486404 GIGYF2Q6Y7W6 1299 aaKnown RBP16.71■□□□□ 0.27
CHMP3-208ENST00000486404 XAGE3Q8WTP9 111 aa16.71■□□□□ 0.27
CHMP3-208ENST00000486404 CNKSR1Q969H4 720 aa16.71■□□□□ 0.27
CHMP3-208ENST00000486404 MASTLQ96GX5 879 aa16.71■□□□□ 0.27
CHMP3-208ENST00000486404 DDX21Q9NR30 783 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHMP3-208ENST00000486404 RNF181Q9P0P0 153 aa16.71■□□□□ 0.27
CHMP3-208ENST00000486404 ZNF219Q9P2Y4 722 aaPredicted RBP16.71■□□□□ 0.27
CHMP3-208ENST00000486404 ABCC12Q96J65 1359 aa16.71■□□□□ 0.27
CHMP3-208ENST00000486404 LAMB2P55268 1798 aa16.71■□□□□ 0.27
CHMP3-208ENST00000486404 SENP3-EIF4A1A0A087X0R7 540 aa16.7■□□□□ 0.26
CHMP3-208ENST00000486404 RASSF7Q02833 373 aa16.7■□□□□ 0.26
CHMP3-208ENST00000486404 DBF4Q9UBU7 674 aaPredicted RBP16.7■□□□□ 0.26
CHMP3-208ENST00000486404 RIC1Q4ADV7 1423 aa16.7■□□□□ 0.26
CHMP3-208ENST00000486404 UBN2Q6ZU65 1347 aa16.7■□□□□ 0.26
CHMP3-208ENST00000486404 ZNF853P0CG23 659 aa16.69■□□□□ 0.26
CHMP3-208ENST00000486404 SRGNP10124 158 aa16.69■□□□□ 0.26
CHMP3-208ENST00000486404 PARP10Q53GL7 1025 aa16.69■□□□□ 0.26
CHMP3-208ENST00000486404 HSP90AB3PQ58FF7 597 aa16.69■□□□□ 0.26
CHMP3-208ENST00000486404 PRPF40BQ6NWY9 871 aaKnown RBP16.69■□□□□ 0.26
CHMP3-208ENST00000486404 COPS6Q7L5N1 327 aa16.69■□□□□ 0.26
CHMP3-208ENST00000486404 PPP1R42Q7Z4L9 355 aa16.69■□□□□ 0.26
CHMP3-208ENST00000486404 NUTM1Q86Y26 1132 aa16.69■□□□□ 0.26
CHMP3-208ENST00000486404 C21orf2O43822 256 aa16.68■□□□□ 0.26
CHMP3-208ENST00000486404 NPR1P16066 1061 aa16.68■□□□□ 0.26
CHMP3-208ENST00000486404 CCDC27Q2M243 656 aa16.68■□□□□ 0.26
CHMP3-208ENST00000486404 SOGA3Q5TF21 947 aa16.68■□□□□ 0.26
CHMP3-208ENST00000486404 LRP10Q7Z4F1 713 aa16.68■□□□□ 0.26
CHMP3-208ENST00000486404 LMNB1P20700 586 aa16.67■□□□□ 0.26
CHMP3-208ENST00000486404 ERFEQ4G0M1 354 aa16.67■□□□□ 0.26
CHMP3-208ENST00000486404 ZNF34Q8IZ26 560 aa16.67■□□□□ 0.26
CHMP3-208ENST00000486404 RPGRQ92834 1020 aaKnown RBP16.67■□□□□ 0.26
CHMP3-208ENST00000486404 HYPKQ9NX55 129 aa16.67■□□□□ 0.26
CHMP3-208ENST00000486404 ELL2O00472 640 aaPredicted RBP16.66■□□□□ 0.26
CHMP3-208ENST00000486404 NTSR2O95665 410 aa16.66■□□□□ 0.26
CHMP3-208ENST00000486404 SUSD4Q5VX71 490 aa16.66■□□□□ 0.26
CHMP3-208ENST00000486404 FAM9BQ8IZU0 186 aa16.66■□□□□ 0.26
CHMP3-208ENST00000486404 CHMP4AQ9BY43 222 aa16.66■□□□□ 0.26
CHMP3-208ENST00000486404 RNF123Q5XPI4 1314 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms