RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 QPCTQ16769 361 aa10.16□□□□□ -0.78
SMC4-217ENST00000485867 MAP10Q9P2G4 905 aa10.16□□□□□ -0.78
SMC4-217ENST00000485867 CCDC9Q9Y3X0 531 aaKnown RBP10.16□□□□□ -0.78
SMC4-217ENST00000485867 TLL2Q9Y6L7 1015 aa10.16□□□□□ -0.78
SMC4-217ENST00000485867 ADGRB2O60241 1585 aa10.16□□□□□ -0.78
SMC4-217ENST00000485867 RGPD8O14715 1765 aaPredicted RBP10.16□□□□□ -0.78
SMC4-217ENST00000485867 CCDC144AA2RUR9 1427 aa10.16□□□□□ -0.78
SMC4-217ENST00000485867 NAIPQ13075 1403 aa10.16□□□□□ -0.78
SMC4-217ENST00000485867 VARSP26640 1264 aaKnown RBP10.15□□□□□ -0.78
SMC4-217ENST00000485867 SENP2Q9HC62 589 aa10.15□□□□□ -0.78
SMC4-217ENST00000485867 WASF2Q9Y6W5 498 aa10.15□□□□□ -0.78
SMC4-217ENST00000485867 PPLO60437 1756 aa10.15□□□□□ -0.78
SMC4-217ENST00000485867 NUP188Q5SRE5 1749 aa10.15□□□□□ -0.78
SMC4-217ENST00000485867 THSD7AQ9UPZ6 1657 aa10.15□□□□□ -0.79
SMC4-217ENST00000485867 ROCK1Q13464 1354 aa10.14□□□□□ -0.79
SMC4-217ENST00000485867 PER1O15534 1290 aaPredicted RBP10.14□□□□□ -0.79
SMC4-217ENST00000485867 LILRB3O75022 631 aa10.14□□□□□ -0.79
SMC4-217ENST00000485867 MPNDQ8N594 471 aa10.14□□□□□ -0.79
SMC4-217ENST00000485867 CAMTA1Q9Y6Y1 1673 aa10.14□□□□□ -0.79
SMC4-217ENST00000485867 TNS3Q68CZ2 1445 aa10.14□□□□□ -0.79
SMC4-217ENST00000485867 EZH2Q15910 746 aaKnown RBP10.13□□□□□ -0.79
SMC4-217ENST00000485867 KNDC1Q76NI1 1749 aa10.13□□□□□ -0.79
SMC4-217ENST00000485867 IFT172Q9UG01 1749 aa10.13□□□□□ -0.79
SMC4-217ENST00000485867 FAM182BQ5T319 152 aa10.12□□□□□ -0.79
SMC4-217ENST00000485867 COL14A1Q05707 1796 aaKnown RBP10.11□□□□□ -0.79
SMC4-217ENST00000485867 CAPN5O15484 640 aaPredicted RBP10.11□□□□□ -0.79
SMC4-217ENST00000485867 NFX1Q12986 1120 aaKnown RBP10.11□□□□□ -0.79
SMC4-217ENST00000485867 KIFC2Q96AC6 838 aa10.11□□□□□ -0.79
SMC4-217ENST00000485867 CAMKK2Q96RR4 588 aa10.11□□□□□ -0.79
SMC4-217ENST00000485867 NINLQ9Y2I6 1382 aa10.11□□□□□ -0.79
SMC4-217ENST00000485867 TECPR2O15040 1411 aa10.1□□□□□ -0.79
SMC4-217ENST00000485867 CHD4Q14839 1912 aa10.1□□□□□ -0.79
SMC4-217ENST00000485867 PLEKHG3A1L390 1219 aa10.1□□□□□ -0.79
SMC4-217ENST00000485867 KRT28Q7Z3Y7 464 aa10.1□□□□□ -0.79
SMC4-217ENST00000485867 TRIM46Q7Z4K8 759 aa10.1□□□□□ -0.79
SMC4-217ENST00000485867 FOXJ1Q92949 421 aa10.1□□□□□ -0.79
SMC4-217ENST00000485867 PARD3Q8TEW0 1356 aa10.1□□□□□ -0.79
SMC4-217ENST00000485867 FAM83GA6ND36 823 aa10.09□□□□□ -0.79
SMC4-217ENST00000485867 WFS1O76024 890 aa10.09□□□□□ -0.79
SMC4-217ENST00000485867 BMP1P13497 986 aa10.09□□□□□ -0.79
SMC4-217ENST00000485867 CLK2P49760 499 aaKnown RBP10.09□□□□□ -0.79
SMC4-217ENST00000485867 RTL5Q5HYW3 569 aaPredicted RBP10.09□□□□□ -0.79
SMC4-217ENST00000485867 SBNO1A3KN83 1393 aa10.09□□□□□ -0.79
SMC4-217ENST00000485867 SENP3-EIF4A1A0A087X0R7 540 aa10.08□□□□□ -0.8
SMC4-217ENST00000485867 FAM174AQ8TBP5 190 aa10.08□□□□□ -0.8
SMC4-217ENST00000485867 TSC1Q92574 1164 aa10.08□□□□□ -0.8
SMC4-217ENST00000485867 ARHGEF10O15013 1369 aa10.08□□□□□ -0.8
SMC4-217ENST00000485867 TRPM3Q9HCF6 1732 aaPredicted RBP10.07□□□□□ -0.8
SMC4-217ENST00000485867 CRYBG1Q9Y4K1 1723 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 ALS2Q96Q42 1657 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 NRXN1Q9ULB1 1477 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 PLEKHH1Q9ULM0 1364 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 LOC105371045A0A1W2PR82 267 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 NNTQ13423 1086 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 C4orf48Q5BLP8 95 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 WAPLQ7Z5K2 1190 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 ZNF784Q8NCA9 323 aaPredicted RBP10.07□□□□□ -0.8
SMC4-217ENST00000485867 CDK15Q96Q40 435 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 RSPH6AQ9H0K4 717 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 PPP1R1BQ9UD71 204 aaPredicted RBP10.07□□□□□ -0.8
SMC4-217ENST00000485867 SPATA31A5Q5VU36 1347 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 SPATA31A7Q8IWB4 1347 aa10.07□□□□□ -0.8
SMC4-217ENST00000485867 TRIM37O94972 964 aa10.06□□□□□ -0.8
SMC4-217ENST00000485867 PSME1Q06323 249 aa10.06□□□□□ -0.8
SMC4-217ENST00000485867 SPON1Q9HCB6 807 aa10.06□□□□□ -0.8
SMC4-217ENST00000485867 BTG4Q9NY30 223 aa10.06□□□□□ -0.8
SMC4-217ENST00000485867 RRBP1Q9P2E9 1410 aaKnown RBP10.06□□□□□ -0.8
SMC4-217ENST00000485867 RPGRIP1LQ68CZ1 1315 aa10.06□□□□□ -0.8
SMC4-217ENST00000485867 KCNQ2O43526 872 aa10.05□□□□□ -0.8
SMC4-217ENST00000485867 ADH1CP00326 375 aa10.05□□□□□ -0.8
SMC4-217ENST00000485867 HELBQ8NG08 1087 aaPredicted RBP10.05□□□□□ -0.8
SMC4-217ENST00000485867 POLR3EQ9NVU0 708 aa10.05□□□□□ -0.8
SMC4-217ENST00000485867 CASZ1Q86V15 1759 aa10.05□□□□□ -0.8
SMC4-217ENST00000485867 NRKQ7Z2Y5 1582 aa10.05□□□□□ -0.8
SMC4-217ENST00000485867 ABCC11Q96J66 1382 aa10.04□□□□□ -0.8
SMC4-217ENST00000485867 TERTO14746 1132 aaKnown RBP10.04□□□□□ -0.8
SMC4-217ENST00000485867 APBA3O96018 575 aa10.04□□□□□ -0.8
SMC4-217ENST00000485867 TIMP2P16035 220 aa10.04□□□□□ -0.8
SMC4-217ENST00000485867 LCE2CQ5TA81 110 aa10.04□□□□□ -0.8
SMC4-217ENST00000485867 FAM196AQ6ZSG2 479 aa10.04□□□□□ -0.8
SMC4-217ENST00000485867 KLF16Q9BXK1 252 aaPredicted RBP10.04□□□□□ -0.8
SMC4-217ENST00000485867 STK26Q9P289 416 aa10.04□□□□□ -0.8
SMC4-217ENST00000485867 MYOM1P52179 1685 aa10.03□□□□□ -0.8
SMC4-217ENST00000485867 C1QTNF8P60827 252 aa10.03□□□□□ -0.8
SMC4-217ENST00000485867 NBPF8Q3BBV2 869 aa10.03□□□□□ -0.8
SMC4-217ENST00000485867 NBPF14Q5TI25 921 aa10.03□□□□□ -0.8
SMC4-217ENST00000485867 BPHLQ86WA6 291 aaPredicted RBP10.03□□□□□ -0.8
SMC4-217ENST00000485867 RGPD3A6NKT7 1758 aaPredicted RBP10.02□□□□□ -0.81
SMC4-217ENST00000485867 RGPD4Q7Z3J3 1758 aa10.02□□□□□ -0.81
SMC4-217ENST00000485867 SH3RF1Q7Z6J0 888 aa10.02□□□□□ -0.81
SMC4-217ENST00000485867 WDR4P57081 412 aaKnown RBP10.01□□□□□ -0.81
SMC4-217ENST00000485867 AGERQ15109 404 aa10.01□□□□□ -0.81
SMC4-217ENST00000485867 ARMC2Q8NEN0 867 aa10.01□□□□□ -0.81
SMC4-217ENST00000485867 C1QTNF2Q9BXJ5 285 aa10.01□□□□□ -0.81
SMC4-217ENST00000485867 KDM4CQ9H3R0 1056 aa10.01□□□□□ -0.81
SMC4-217ENST00000485867 GPBP1L1Q9HC44 474 aaPredicted RBP10.01□□□□□ -0.81
SMC4-217ENST00000485867 ADGRF5Q8IZF2 1346 aa10.01□□□□□ -0.81
SMC4-217ENST00000485867 UTRNP46939 3433 aa10.01□□□□□ -0.81
SMC4-217ENST00000485867 YTHDC2Q9H6S0 1430 aaKnown RBP10□□□□□ -0.81
SMC4-217ENST00000485867 WIPF1O43516 503 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms