RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 ARFGEF2Q9Y6D5 1785 aa18.59■□□□□ 0.57
SQSTM1-208ENST00000485412 CHADLQ6NUI6 762 aa18.58■□□□□ 0.56
SQSTM1-208ENST00000485412 CAMTA2O94983 1202 aa18.57■□□□□ 0.56
SQSTM1-208ENST00000485412 CNBD1Q8NA66 436 aa18.57■□□□□ 0.56
SQSTM1-208ENST00000485412 CNKSR1Q969H4 720 aa18.57■□□□□ 0.56
SQSTM1-208ENST00000485412 FMNL2Q96PY5 1086 aa18.57■□□□□ 0.56
SQSTM1-208ENST00000485412 SETDB2Q96T68 719 aa18.57■□□□□ 0.56
SQSTM1-208ENST00000485412 CREBZFQ9NS37 354 aa18.57■□□□□ 0.56
SQSTM1-208ENST00000485412 USP16Q9Y5T5 823 aa18.57■□□□□ 0.56
SQSTM1-208ENST00000485412 LTBP3Q9NS15 1303 aa18.56■□□□□ 0.56
SQSTM1-208ENST00000485412 BTBD11A6QL63 1104 aa18.56■□□□□ 0.56
SQSTM1-208ENST00000485412 PPP2R1AP30153 589 aa18.56■□□□□ 0.56
SQSTM1-208ENST00000485412 IL6STP40189 918 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-208ENST00000485412 ST5P78524 1137 aa18.56■□□□□ 0.56
SQSTM1-208ENST00000485412 DCTN1Q14203 1278 aa18.56■□□□□ 0.56
SQSTM1-208ENST00000485412 MCM10Q7L590 875 aa18.56■□□□□ 0.56
SQSTM1-208ENST00000485412 MKRN1Q9UHC7 482 aaKnown RBP18.56■□□□□ 0.56
SQSTM1-208ENST00000485412 DDNO94850 711 aaPredicted RBP18.55■□□□□ 0.56
SQSTM1-208ENST00000485412 SOGA3Q5TF21 947 aa18.55■□□□□ 0.56
SQSTM1-208ENST00000485412 STYK1Q6J9G0 422 aa18.54■□□□□ 0.56
SQSTM1-208ENST00000485412 PRPF40BQ6NWY9 871 aaKnown RBP18.54■□□□□ 0.56
SQSTM1-208ENST00000485412 LAMB4A4D0S4 1761 aa18.54■□□□□ 0.56
SQSTM1-208ENST00000485412 SCN4AP35499 1836 aa18.53■□□□□ 0.56
SQSTM1-208ENST00000485412 POTEIP0CG38 1075 aa18.53■□□□□ 0.56
SQSTM1-208ENST00000485412 POTEJP0CG39 1038 aa18.53■□□□□ 0.56
SQSTM1-208ENST00000485412 U2AF1L5P0DN76 240 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-208ENST00000485412 U2AF1Q01081 240 aaKnown RBP eCLIP18.53■□□□□ 0.56
SQSTM1-208ENST00000485412 MASTLQ96GX5 879 aa18.53■□□□□ 0.56
SQSTM1-208ENST00000485412 CFAP53Q96M91 514 aa18.53■□□□□ 0.56
SQSTM1-208ENST00000485412 IQCA1LA6NCM1 817 aa18.52■□□□□ 0.56
SQSTM1-208ENST00000485412 DZIP3Q86Y13 1208 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-208ENST00000485412 KDM3BQ7LBC6 1761 aa18.52■□□□□ 0.55
SQSTM1-208ENST00000485412 SRGNP10124 158 aa18.51■□□□□ 0.55
SQSTM1-208ENST00000485412 NBPF26B4DH59 902 aa18.5■□□□□ 0.55
SQSTM1-208ENST00000485412 NBPF10Q6P3W6 841 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-208ENST00000485412 LDHDQ86WU2 507 aa18.5■□□□□ 0.55
SQSTM1-208ENST00000485412 NBPF15Q8N660 670 aa18.5■□□□□ 0.55
SQSTM1-208ENST00000485412 NBPF5PQ86XG9 351 aaPredicted RBP18.49■□□□□ 0.55
SQSTM1-208ENST00000485412 MIS18AQ9NYP9 233 aa18.49■□□□□ 0.55
SQSTM1-208ENST00000485412 CNTNAP1P78357 1384 aa18.49■□□□□ 0.55
SQSTM1-208ENST00000485412 CCDC93Q567U6 631 aa18.48■□□□□ 0.55
SQSTM1-208ENST00000485412 AIDAQ96BJ3 306 aa18.48■□□□□ 0.55
SQSTM1-208ENST00000485412 NUDCQ9Y266 331 aa18.48■□□□□ 0.55
SQSTM1-208ENST00000485412 NUP98P52948 1817 aa18.47■□□□□ 0.55
SQSTM1-208ENST00000485412 FOXN1O15353 648 aa18.47■□□□□ 0.55
SQSTM1-208ENST00000485412 EAPPQ56P03 285 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-208ENST00000485412 RTF1Q92541 710 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-208ENST00000485412 L3MBTL3Q96JM7 780 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-208ENST00000485412 TAF1DQ9H5J8 278 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-208ENST00000485412 ZNF652Q9Y2D9 606 aa18.47■□□□□ 0.55
SQSTM1-208ENST00000485412 PASKQ96RG2 1323 aa18.47■□□□□ 0.55
SQSTM1-208ENST00000485412 SNRPA1P09661 255 aaKnown RBP18.46■□□□□ 0.55
SQSTM1-208ENST00000485412 NPR1P16066 1061 aa18.46■□□□□ 0.55
SQSTM1-208ENST00000485412 OLFM4Q6UX06 510 aa18.46■□□□□ 0.55
SQSTM1-208ENST00000485412 CLEC11AQ9Y240 323 aa18.46■□□□□ 0.55
SQSTM1-208ENST00000485412 TMEM88BA6NKF7 163 aa18.45■□□□□ 0.54
SQSTM1-208ENST00000485412 CLEC4GQ6UXB4 293 aa18.45■□□□□ 0.54
SQSTM1-208ENST00000485412 FAM177BA6PVY3 158 aa18.44■□□□□ 0.54
SQSTM1-208ENST00000485412 FKBP4Q02790 459 aaKnown RBP eCLIP18.44■□□□□ 0.54
SQSTM1-208ENST00000485412 HLFQ16534 295 aa18.44■□□□□ 0.54
SQSTM1-208ENST00000485412 C7orf43Q8WVR3 580 aa18.44■□□□□ 0.54
SQSTM1-208ENST00000485412 PRDM10Q9NQV6 1147 aa18.44■□□□□ 0.54
SQSTM1-208ENST00000485412 ZNF277Q9NRM2 450 aaPredicted RBP18.44■□□□□ 0.54
SQSTM1-208ENST00000485412 HACL1Q9UJ83 578 aa18.44■□□□□ 0.54
SQSTM1-208ENST00000485412 ZNF541Q9H0D2 1346 aa18.44■□□□□ 0.54
SQSTM1-208ENST00000485412 CTCFP49711 727 aaPredicted RBP18.43■□□□□ 0.54
SQSTM1-208ENST00000485412 VEGFBP49765 207 aa18.43■□□□□ 0.54
SQSTM1-208ENST00000485412 THUMPD2Q9BTF0 503 aaKnown RBP18.43■□□□□ 0.54
SQSTM1-208ENST00000485412 TPTE2Q6XPS3 522 aa18.42■□□□□ 0.54
SQSTM1-208ENST00000485412 RTKN2Q8IZC4 609 aa18.42■□□□□ 0.54
SQSTM1-208ENST00000485412 NIP7Q9Y221 180 aaKnown RBP eCLIP18.42■□□□□ 0.54
SQSTM1-208ENST00000485412 ABCC12Q96J65 1359 aa18.42■□□□□ 0.54
SQSTM1-208ENST00000485412 ITGBL1O95965 494 aaPredicted RBP18.41■□□□□ 0.54
SQSTM1-208ENST00000485412 EPHX2P34913 555 aa18.41■□□□□ 0.54
SQSTM1-208ENST00000485412 TAF7Q15545 349 aaPredicted RBP18.41■□□□□ 0.54
SQSTM1-208ENST00000485412 SLC51AQ86UW1 340 aa18.41■□□□□ 0.54
SQSTM1-208ENST00000485412 ADAMTSL1Q8N6G6 1762 aa18.4■□□□□ 0.54
SQSTM1-208ENST00000485412 HTATSF1O43719 755 aaKnown RBP18.4■□□□□ 0.54
SQSTM1-208ENST00000485412 NGEFQ8N5V2 710 aa18.4■□□□□ 0.54
SQSTM1-208ENST00000485412 PLEKHF1Q96S99 279 aa18.4■□□□□ 0.54
SQSTM1-208ENST00000485412 KLRG2A4D1S0 409 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-208ENST00000485412 GTF2E1P29083 439 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-208ENST00000485412 ALDH1B1P30837 517 aa18.39■□□□□ 0.53
SQSTM1-208ENST00000485412 IARSP41252 1262 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-208ENST00000485412 PNMA8AQ86V59 439 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-208ENST00000485412 RNF123Q5XPI4 1314 aa18.39■□□□□ 0.53
SQSTM1-208ENST00000485412 TTLL7Q6ZT98 887 aa18.38■□□□□ 0.53
SQSTM1-208ENST00000485412 SYNE4Q8N205 404 aa18.38■□□□□ 0.53
SQSTM1-208ENST00000485412 COL4A5P29400 1685 aa18.38■□□□□ 0.53
SQSTM1-208ENST00000485412 RGL2O15211 777 aa18.37■□□□□ 0.53
SQSTM1-208ENST00000485412 LBX1P52954 281 aa18.37■□□□□ 0.53
SQSTM1-208ENST00000485412 DEFB115Q30KQ5 88 aa18.37■□□□□ 0.53
SQSTM1-208ENST00000485412 MAP1SQ66K74 1059 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-208ENST00000485412 NUTM1Q86Y26 1132 aa18.37■□□□□ 0.53
SQSTM1-208ENST00000485412 CNTROBQ8N137 903 aa18.37■□□□□ 0.53
SQSTM1-208ENST00000485412 WBP1LQ9NX94 342 aa18.37■□□□□ 0.53
SQSTM1-208ENST00000485412 SNED1Q8TER0 1413 aa18.37■□□□□ 0.53
SQSTM1-208ENST00000485412 FZD9O00144 591 aa18.36■□□□□ 0.53
SQSTM1-208ENST00000485412 EIF4A1P60842 406 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-208ENST00000485412 GPC2Q8N158 579 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms