RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 PRR5LQ6MZQ0 368 aa14.99□□□□□ -0.01
CCM2-213ENST00000480658 STYK1Q6J9G0 422 aa14.98□□□□□ -0.01
CCM2-213ENST00000480658 CHMP4AQ9BY43 222 aa14.98□□□□□ -0.01
CCM2-213ENST00000480658 LMNB1P20700 586 aa14.97□□□□□ -0.01
CCM2-213ENST00000480658 MASTLQ96GX5 879 aa14.97□□□□□ -0.01
CCM2-213ENST00000480658 NIP7Q9Y221 180 aaKnown RBP eCLIP14.97□□□□□ -0.01
CCM2-213ENST00000480658 HOXB7P09629 217 aa14.96□□□□□ -0.01
CCM2-213ENST00000480658 GTF2E1P29083 439 aaPredicted RBP14.96□□□□□ -0.01
CCM2-213ENST00000480658 C9orf131Q5VYM1 1079 aa14.96□□□□□ -0.01
CCM2-213ENST00000480658 ZNF622Q969S3 477 aaKnown RBP eCLIP14.96□□□□□ -0.01
CCM2-213ENST00000480658 RNF123Q5XPI4 1314 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 MAP3K15Q6ZN16 1313 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 RIC1Q4ADV7 1423 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 SENP3-EIF4A1A0A087X0R7 540 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 PRAMEF22A3QJZ6 481 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 NBPF26B4DH59 902 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 NBPF10Q6P3W6 841 aaKnown RBP14.95□□□□□ -0.02
CCM2-213ENST00000480658 NBPF15Q8N660 670 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 MIS18AQ9NYP9 233 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 RNF181Q9P0P0 153 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 TNRC6CQ9HCJ0 1690 aaKnown RBP14.95□□□□□ -0.02
CCM2-213ENST00000480658 ARFGEF2Q9Y6D5 1785 aa14.95□□□□□ -0.02
CCM2-213ENST00000480658 LTBP3Q9NS15 1303 aa14.94□□□□□ -0.02
CCM2-213ENST00000480658 HSP90AB3PQ58FF7 597 aa14.94□□□□□ -0.02
CCM2-213ENST00000480658 C16orf71Q8IYS4 520 aaPredicted RBP14.94□□□□□ -0.02
CCM2-213ENST00000480658 ZNF526Q8TF50 670 aaPredicted RBP14.94□□□□□ -0.02
CCM2-213ENST00000480658 ANKRD31Q8N7Z5 1873 aa14.93□□□□□ -0.02
CCM2-213ENST00000480658 TOMM70O94826 608 aa14.93□□□□□ -0.02
CCM2-213ENST00000480658 SRGNP10124 158 aa14.93□□□□□ -0.02
CCM2-213ENST00000480658 NPR1P16066 1061 aa14.93□□□□□ -0.02
CCM2-213ENST00000480658 ALDH1B1P30837 517 aa14.93□□□□□ -0.02
CCM2-213ENST00000480658 GRIPAP1Q4V328 841 aa14.93□□□□□ -0.02
CCM2-213ENST00000480658 PARP10Q53GL7 1025 aa14.93□□□□□ -0.02
CCM2-213ENST00000480658 THUMPD2Q9BTF0 503 aaKnown RBP14.93□□□□□ -0.02
CCM2-213ENST00000480658 COL11A2P13942 1736 aaPredicted RBP14.92□□□□□ -0.02
CCM2-213ENST00000480658 PIP4K2AP48426 406 aaPredicted RBP14.92□□□□□ -0.02
CCM2-213ENST00000480658 PPP1R42Q7Z4L9 355 aa14.92□□□□□ -0.02
CCM2-213ENST00000480658 TAOK3Q9H2K8 898 aa14.92□□□□□ -0.02
CCM2-213ENST00000480658 ADAMTS8Q9UP79 889 aa14.92□□□□□ -0.02
CCM2-213ENST00000480658 RRP7AQ9Y3A4 280 aaKnown RBP14.92□□□□□ -0.02
CCM2-213ENST00000480658 KLRG2A4D1S0 409 aaPredicted RBP14.91□□□□□ -0.02
CCM2-213ENST00000480658 MYL6BP14649 208 aa14.91□□□□□ -0.02
CCM2-213ENST00000480658 DPY19L2Q6NUT2 758 aa14.91□□□□□ -0.02
CCM2-213ENST00000480658 CFAP44Q96MT7 982 aa14.91□□□□□ -0.02
CCM2-213ENST00000480658 CHL1O00533 1208 aa14.9□□□□□ -0.02
CCM2-213ENST00000480658 NEUROD2Q15784 382 aa14.9□□□□□ -0.02
CCM2-213ENST00000480658 PRPF40BQ6NWY9 871 aaKnown RBP14.9□□□□□ -0.02
CCM2-213ENST00000480658 GIGYF2Q6Y7W6 1299 aaKnown RBP14.9□□□□□ -0.02
CCM2-213ENST00000480658 CCDC146Q8IYE0 955 aa14.9□□□□□ -0.02
CCM2-213ENST00000480658 TIAM2Q8IVF5 1701 aa14.89□□□□□ -0.03
CCM2-213ENST00000480658 KIF3CO14782 793 aa14.89□□□□□ -0.03
CCM2-213ENST00000480658 HSPA6P17066 643 aa14.89□□□□□ -0.03
CCM2-213ENST00000480658 CCDC93Q567U6 631 aa14.89□□□□□ -0.03
CCM2-213ENST00000480658 CC2D2BQ6DHV5 1058 aa14.89□□□□□ -0.03
CCM2-213ENST00000480658 RTKN2Q8IZC4 609 aa14.89□□□□□ -0.03
CCM2-213ENST00000480658 RBM46Q8TBY0 533 aaKnown RBP14.89□□□□□ -0.03
CCM2-213ENST00000480658 TMX4Q9H1E5 349 aaPredicted RBP14.89□□□□□ -0.03
CCM2-213ENST00000480658 C21orf2O43822 256 aa14.88□□□□□ -0.03
CCM2-213ENST00000480658 EIF2S2P20042 333 aaKnown RBP14.88□□□□□ -0.03
CCM2-213ENST00000480658 GNAI1P63096 354 aa14.88□□□□□ -0.03
CCM2-213ENST00000480658 FSTL1Q12841 308 aa14.88□□□□□ -0.03
CCM2-213ENST00000480658 DDX21Q9NR30 783 aaKnown RBP eCLIP14.88□□□□□ -0.03
CCM2-213ENST00000480658 IFT57Q9NWB7 429 aa14.88□□□□□ -0.03
CCM2-213ENST00000480658 DBF4Q9UBU7 674 aaPredicted RBP14.88□□□□□ -0.03
CCM2-213ENST00000480658 TRIM35Q9UPQ4 493 aa14.88□□□□□ -0.03
CCM2-213ENST00000480658 SBF1O95248 1867 aa14.87□□□□□ -0.03
CCM2-213ENST00000480658 GLTPD2A6NH11 291 aa14.87□□□□□ -0.03
CCM2-213ENST00000480658 HLFQ16534 295 aa14.87□□□□□ -0.03
CCM2-213ENST00000480658 CRY2Q49AN0 593 aa14.87□□□□□ -0.03
CCM2-213ENST00000480658 NCBP3Q53F19 620 aaKnown RBP14.87□□□□□ -0.03
CCM2-213ENST00000480658 NGEFQ8N5V2 710 aa14.87□□□□□ -0.03
CCM2-213ENST00000480658 RPGRQ92834 1020 aaKnown RBP14.87□□□□□ -0.03
CCM2-213ENST00000480658 ZBTB3Q9H5J0 574 aa14.87□□□□□ -0.03
CCM2-213ENST00000480658 NUP98P52948 1817 aa14.87□□□□□ -0.03
CCM2-213ENST00000480658 FER1L6Q2WGJ9 1857 aa14.86□□□□□ -0.03
CCM2-213ENST00000480658 NFKBIEO00221 500 aa14.86□□□□□ -0.03
CCM2-213ENST00000480658 ANP32CO43423 234 aa14.86□□□□□ -0.03
CCM2-213ENST00000480658 APLP1P51693 650 aa14.86□□□□□ -0.03
CCM2-213ENST00000480658 RASSF7Q02833 373 aa14.86□□□□□ -0.03
CCM2-213ENST00000480658 ERFEQ4G0M1 354 aa14.86□□□□□ -0.03
CCM2-213ENST00000480658 HDGFL1Q5TGJ6 251 aa14.86□□□□□ -0.03
CCM2-213ENST00000480658 ZNF34Q8IZ26 560 aa14.86□□□□□ -0.03
CCM2-213ENST00000480658 LAS1LQ9Y4W2 734 aaKnown RBP14.86□□□□□ -0.03
CCM2-213ENST00000480658 HSP90B1P14625 803 aaKnown RBP14.85□□□□□ -0.03
CCM2-213ENST00000480658 TTLL7Q6ZT98 887 aa14.85□□□□□ -0.03
CCM2-213ENST00000480658 NLRP3Q96P20 1036 aa14.85□□□□□ -0.03
CCM2-213ENST00000480658 HYPKQ9NX55 129 aa14.85□□□□□ -0.03
CCM2-213ENST00000480658 ANKRD36CQ5JPF3 1778 aa14.85□□□□□ -0.03
CCM2-213ENST00000480658 ZNF316A6NFI3 1004 aaPredicted RBP14.84□□□□□ -0.03
CCM2-213ENST00000480658 VEGFAP15692 232 aaPredicted RBP14.84□□□□□ -0.03
CCM2-213ENST00000480658 HOXA10P31260 410 aaPredicted RBP14.84□□□□□ -0.03
CCM2-213ENST00000480658 FKBP4Q02790 459 aaKnown RBP eCLIP14.84□□□□□ -0.03
CCM2-213ENST00000480658 PDIA6Q15084 440 aa14.84□□□□□ -0.03
CCM2-213ENST00000480658 CCDC27Q2M243 656 aa14.84□□□□□ -0.03
CCM2-213ENST00000480658 SMC1BQ8NDV3 1235 aa14.84□□□□□ -0.03
CCM2-213ENST00000480658 RBM17Q96I25 401 aaKnown RBP14.84□□□□□ -0.03
CCM2-213ENST00000480658 UTP14AQ9BVJ6 771 aaKnown RBP14.84□□□□□ -0.03
CCM2-213ENST00000480658 IQCA1LA6NCM1 817 aa14.83□□□□□ -0.04
CCM2-213ENST00000480658 FAM177BA6PVY3 158 aa14.83□□□□□ -0.04
CCM2-213ENST00000480658 NTSR2O95665 410 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms