RNA–Protein interactions for RNA: ENST00000480127.1

COL17A1-205, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 3

Gene COL17A1, Length 420 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-205ENST00000480127 CNBD1Q8NA66 436 aa9.49□□□□□ -0.89
COL17A1-205ENST00000480127 C7orf43Q8WVR3 580 aa9.49□□□□□ -0.89
COL17A1-205ENST00000480127 MASTLQ96GX5 879 aa9.49□□□□□ -0.89
COL17A1-205ENST00000480127 L3MBTL3Q96JM7 780 aaPredicted RBP9.49□□□□□ -0.89
COL17A1-205ENST00000480127 SETDB2Q96T68 719 aa9.49□□□□□ -0.89
COL17A1-205ENST00000480127 TEX13AQ9BXU3 409 aaPredicted RBP9.49□□□□□ -0.89
COL17A1-205ENST00000480127 TAF1DQ9H5J8 278 aaPredicted RBP9.49□□□□□ -0.89
COL17A1-205ENST00000480127 PRDM10Q9NQV6 1147 aa9.49□□□□□ -0.89
COL17A1-205ENST00000480127 ZNF330Q9Y3S2 320 aaPredicted RBP9.49□□□□□ -0.89
COL17A1-205ENST00000480127 SLX4Q8IY92 1834 aa9.49□□□□□ -0.89
COL17A1-205ENST00000480127 IQCA1LA6NCM1 817 aa9.48□□□□□ -0.89
COL17A1-205ENST00000480127 VEGFBP49765 207 aa9.48□□□□□ -0.89
COL17A1-205ENST00000480127 TEFQ10587 303 aa9.48□□□□□ -0.89
COL17A1-205ENST00000480127 SOGA3Q5TF21 947 aa9.48□□□□□ -0.89
COL17A1-205ENST00000480127 NUDCQ9Y266 331 aa9.48□□□□□ -0.89
COL17A1-205ENST00000480127 TMEM88BA6NKF7 163 aa9.47□□□□□ -0.89
COL17A1-205ENST00000480127 KCNQ3O43525 872 aa9.47□□□□□ -0.89
COL17A1-205ENST00000480127 CTCFP49711 727 aaPredicted RBP9.47□□□□□ -0.89
COL17A1-205ENST00000480127 ST5P78524 1137 aa9.47□□□□□ -0.89
COL17A1-205ENST00000480127 DZIP3Q86Y13 1208 aaKnown RBP9.47□□□□□ -0.89
COL17A1-205ENST00000480127 FMNL2Q96PY5 1086 aa9.47□□□□□ -0.89
COL17A1-205ENST00000480127 ZNF541Q9H0D2 1346 aa9.47□□□□□ -0.89
COL17A1-205ENST00000480127 ARFGEF2Q9Y6D5 1785 aa9.47□□□□□ -0.89
COL17A1-205ENST00000480127 SIPA1L3O60292 1781 aaPredicted RBP9.46□□□□□ -0.9
COL17A1-205ENST00000480127 ADAMTSL1Q8N6G6 1762 aa9.46□□□□□ -0.9
COL17A1-205ENST00000480127 KLRG2A4D1S0 409 aaPredicted RBP9.46□□□□□ -0.9
COL17A1-205ENST00000480127 GNAT3A8MTJ3 354 aa9.46□□□□□ -0.9
COL17A1-205ENST00000480127 PER1O15534 1290 aaPredicted RBP9.46□□□□□ -0.9
COL17A1-205ENST00000480127 CCDC93Q567U6 631 aa9.46□□□□□ -0.9
COL17A1-205ENST00000480127 WBP1LQ9NX94 342 aa9.46□□□□□ -0.9
COL17A1-205ENST00000480127 USP16Q9Y5T5 823 aa9.46□□□□□ -0.9
COL17A1-205ENST00000480127 CEMIPQ8WUJ3 1361 aa9.46□□□□□ -0.9
COL17A1-205ENST00000480127 COL3A1P02461 1466 aaPredicted RBP9.46□□□□□ -0.9
COL17A1-205ENST00000480127 BCORQ6W2J9 1755 aa9.45□□□□□ -0.9
COL17A1-205ENST00000480127 SCN4AP35499 1836 aa9.45□□□□□ -0.9
COL17A1-205ENST00000480127 CACNA1SQ13698 1873 aa9.45□□□□□ -0.9
COL17A1-205ENST00000480127 PRAMEF22A3QJZ6 481 aa9.45□□□□□ -0.9
COL17A1-205ENST00000480127 NPR1P16066 1061 aa9.45□□□□□ -0.9
COL17A1-205ENST00000480127 PIP4K2AP48426 406 aaPredicted RBP9.45□□□□□ -0.9
COL17A1-205ENST00000480127 LBX1P52954 281 aa9.45□□□□□ -0.9
COL17A1-205ENST00000480127 FKBP4Q02790 459 aaKnown RBP eCLIP9.45□□□□□ -0.9
COL17A1-205ENST00000480127 EAPPQ56P03 285 aaPredicted RBP9.45□□□□□ -0.9
COL17A1-205ENST00000480127 OLFM4Q6UX06 510 aa9.45□□□□□ -0.9
COL17A1-205ENST00000480127 GAS2L2Q8NHY3 880 aa9.45□□□□□ -0.9
COL17A1-205ENST00000480127 RTF1Q92541 710 aaKnown RBP9.45□□□□□ -0.9
COL17A1-205ENST00000480127 AIDAQ96BJ3 306 aa9.45□□□□□ -0.9
COL17A1-205ENST00000480127 ZNF277Q9NRM2 450 aaPredicted RBP9.45□□□□□ -0.9
COL17A1-205ENST00000480127 RASSF10A6NK89 507 aa9.44□□□□□ -0.9
COL17A1-205ENST00000480127 HSPA8P11142 646 aaKnown RBP9.44□□□□□ -0.9
COL17A1-205ENST00000480127 EPHX2P34913 555 aa9.44□□□□□ -0.9
COL17A1-205ENST00000480127 CLEC4GQ6UXB4 293 aa9.44□□□□□ -0.9
COL17A1-205ENST00000480127 NBPF5PQ86XG9 351 aaPredicted RBP9.44□□□□□ -0.9
COL17A1-205ENST00000480127 HACL1Q9UJ83 578 aa9.44□□□□□ -0.9
COL17A1-205ENST00000480127 SNED1Q8TER0 1413 aa9.43□□□□□ -0.9
COL17A1-205ENST00000480127 RNF123Q5XPI4 1314 aa9.43□□□□□ -0.9
COL17A1-205ENST00000480127 BTBD11A6QL63 1104 aa9.43□□□□□ -0.9
COL17A1-205ENST00000480127 FZD9O00144 591 aa9.43□□□□□ -0.9
COL17A1-205ENST00000480127 U2AF1L5P0DN76 240 aaPredicted RBP9.43□□□□□ -0.9
COL17A1-205ENST00000480127 U2AF1Q01081 240 aaKnown RBP eCLIP9.43□□□□□ -0.9
COL17A1-205ENST00000480127 DEFB115Q30KQ5 88 aa9.43□□□□□ -0.9
COL17A1-205ENST00000480127 MAP1SQ66K74 1059 aaPredicted RBP9.43□□□□□ -0.9
COL17A1-205ENST00000480127 RTKN2Q8IZC4 609 aa9.43□□□□□ -0.9
COL17A1-205ENST00000480127 CNTROBQ8N137 903 aa9.43□□□□□ -0.9
COL17A1-205ENST00000480127 PHACTR3Q96KR7 559 aa9.43□□□□□ -0.9
COL17A1-205ENST00000480127 CLEC11AQ9Y240 323 aa9.43□□□□□ -0.9
COL17A1-205ENST00000480127 WDR33Q9C0J8 1336 aaKnown RBP9.42□□□□□ -0.9
COL17A1-205ENST00000480127 NBPF26B4DH59 902 aa9.42□□□□□ -0.9
COL17A1-205ENST00000480127 SLC34A2O95436 690 aa9.42□□□□□ -0.9
COL17A1-205ENST00000480127 IARSP41252 1262 aaKnown RBP9.42□□□□□ -0.9
COL17A1-205ENST00000480127 NBPF10Q6P3W6 841 aaKnown RBP9.42□□□□□ -0.9
COL17A1-205ENST00000480127 TPTE2Q6XPS3 522 aa9.42□□□□□ -0.9
COL17A1-205ENST00000480127 PNMA8AQ86V59 439 aaPredicted RBP9.42□□□□□ -0.9
COL17A1-205ENST00000480127 SYNE4Q8N205 404 aa9.42□□□□□ -0.9
COL17A1-205ENST00000480127 NBPF15Q8N660 670 aa9.42□□□□□ -0.9
COL17A1-205ENST00000480127 ABHD8Q96I13 439 aa9.42□□□□□ -0.9
COL17A1-205ENST00000480127 RGL2O15211 777 aa9.41□□□□□ -0.9
COL17A1-205ENST00000480127 SNRPA1P09661 255 aaKnown RBP9.41□□□□□ -0.9
COL17A1-205ENST00000480127 GPC2Q8N158 579 aa9.41□□□□□ -0.9
COL17A1-205ENST00000480127 NIP7Q9Y221 180 aaKnown RBP eCLIP9.41□□□□□ -0.9
COL17A1-205ENST00000480127 ZNF652Q9Y2D9 606 aa9.41□□□□□ -0.9
COL17A1-205ENST00000480127 COL4A5P29400 1685 aa9.4□□□□□ -0.9
COL17A1-205ENST00000480127 FAM177BA6PVY3 158 aa9.4□□□□□ -0.9
COL17A1-205ENST00000480127 ALDH1B1P30837 517 aa9.4□□□□□ -0.9
COL17A1-205ENST00000480127 PRKAR2BP31323 418 aa9.4□□□□□ -0.9
COL17A1-205ENST00000480127 MAP2K1Q02750 393 aaPredicted RBP9.4□□□□□ -0.9
COL17A1-205ENST00000480127 FMR1Q06787 632 aaKnown RBP eCLIP9.4□□□□□ -0.9
COL17A1-205ENST00000480127 HLFQ16534 295 aa9.4□□□□□ -0.9
COL17A1-205ENST00000480127 FAM161AQ3B820 660 aa9.4□□□□□ -0.9
COL17A1-205ENST00000480127 PSMD1Q99460 953 aa9.4□□□□□ -0.9
COL17A1-205ENST00000480127 RSPH6AQ9H0K4 717 aa9.4□□□□□ -0.9
COL17A1-205ENST00000480127 DDX21Q9NR30 783 aaKnown RBP eCLIP9.4□□□□□ -0.9
COL17A1-205ENST00000480127 LTBP1Q14766 1721 aa9.39□□□□□ -0.91
COL17A1-205ENST00000480127 NPC1L1Q9UHC9 1359 aa9.39□□□□□ -0.91
COL17A1-205ENST00000480127 CRY2Q49AN0 593 aa9.39□□□□□ -0.91
COL17A1-205ENST00000480127 MCM10Q7L590 875 aa9.39□□□□□ -0.91
COL17A1-205ENST00000480127 ABT1Q9ULW3 272 aaKnown RBP9.39□□□□□ -0.91
COL17A1-205ENST00000480127 ABCC12Q96J65 1359 aa9.38□□□□□ -0.91
COL17A1-205ENST00000480127 THSD7BQ9C0I4 1608 aa9.38□□□□□ -0.91
COL17A1-205ENST00000480127 MAPK8IP3Q9UPT6 1336 aa9.38□□□□□ -0.91
COL17A1-205ENST00000480127 EPS15P42566 896 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms