RNA–Protein interactions for RNA: ENST00000478914.1

XRCC6-208, Transcript of X-ray repair cross complementing 6, human

TSL 2

Gene XRCC6, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
XRCC6-208	ENST00000478914	DICER1	Q9UPY3	1922 aa	Known RBP	11.5	□□□□□ -0.57
XRCC6-208	ENST00000478914	RIPK4	P57078	832 aa		11.49	□□□□□ -0.57
XRCC6-208	ENST00000478914	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.49	□□□□□ -0.57
XRCC6-208	ENST00000478914	THUMPD2	Q9BTF0	503 aa	Known RBP	11.49	□□□□□ -0.57
XRCC6-208	ENST00000478914	FER1L6	Q2WGJ9	1857 aa		11.49	□□□□□ -0.57
XRCC6-208	ENST00000478914	RGL2	O15211	777 aa		11.48	□□□□□ -0.57
XRCC6-208	ENST00000478914	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.48	□□□□□ -0.57
XRCC6-208	ENST00000478914	CCDC24	Q8N4L8	307 aa		11.48	□□□□□ -0.57
XRCC6-208	ENST00000478914	TSPYL4	Q9UJ04	414 aa		11.48	□□□□□ -0.57
XRCC6-208	ENST00000478914	KDM2B	Q8NHM5	1336 aa		11.48	□□□□□ -0.57
XRCC6-208	ENST00000478914	SLX4	Q8IY92	1834 aa		11.48	□□□□□ -0.57
XRCC6-208	ENST00000478914	NBPF26	B4DH59	902 aa		11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	KIF3C	O14782	793 aa		11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	EIF4A1	P60842	406 aa	Known RBP	11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	RASSF7	Q02833	373 aa		11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	NBPF10	Q6P3W6	841 aa	Known RBP	11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	TPTE2	Q6XPS3	522 aa		11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	KIF6	Q6ZMV9	814 aa		11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	NGEF	Q8N5V2	710 aa		11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	NBPF15	Q8N660	670 aa		11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	CNKSR1	Q969H4	720 aa		11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	RRP7A	Q9Y3A4	280 aa	Known RBP	11.47	□□□□□ -0.57
XRCC6-208	ENST00000478914	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.46	□□□□□ -0.57
XRCC6-208	ENST00000478914	MYL6B	P14649	208 aa		11.46	□□□□□ -0.57
XRCC6-208	ENST00000478914	LMNB1	P20700	586 aa		11.46	□□□□□ -0.57
XRCC6-208	ENST00000478914	GTF2E1	P29083	439 aa	Predicted RBP	11.46	□□□□□ -0.57
XRCC6-208	ENST00000478914	TMPO	P42166	694 aa	Known RBP	11.46	□□□□□ -0.57
XRCC6-208	ENST00000478914	STYK1	Q6J9G0	422 aa		11.46	□□□□□ -0.57
XRCC6-208	ENST00000478914	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.46	□□□□□ -0.57
XRCC6-208	ENST00000478914	FAM177B	A6PVY3	158 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	C21orf2	O43822	256 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	TOMM70	O94826	608 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	HSPA6	P17066	643 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	NEUROD2	Q15784	382 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	SOGA3	Q5TF21	947 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	CCDC146	Q8IYE0	955 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	RUNDC1	Q96C34	613 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	MASTL	Q96GX5	879 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	NMRK2	Q9NPI5	230 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	BABAM1	Q9NWV8	329 aa		11.45	□□□□□ -0.58
XRCC6-208	ENST00000478914	ANKRD36C	Q5JPF3	1778 aa		11.44	□□□□□ -0.58
XRCC6-208	ENST00000478914	ERBB4	Q15303	1308 aa		11.44	□□□□□ -0.58
XRCC6-208	ENST00000478914	MAP3K15	Q6ZN16	1313 aa		11.44	□□□□□ -0.58
XRCC6-208	ENST00000478914	ERVV-1	B6SEH8	477 aa		11.44	□□□□□ -0.58
XRCC6-208	ENST00000478914	SRGN	P10124	158 aa		11.44	□□□□□ -0.58
XRCC6-208	ENST00000478914	NYX	Q9GZU5	481 aa		11.44	□□□□□ -0.58
XRCC6-208	ENST00000478914	NPR1	P16066	1061 aa		11.43	□□□□□ -0.58
XRCC6-208	ENST00000478914	EIF2S2	P20042	333 aa	Known RBP	11.43	□□□□□ -0.58
XRCC6-208	ENST00000478914	HLF	Q16534	295 aa		11.43	□□□□□ -0.58
XRCC6-208	ENST00000478914	PRPF40B	Q6NWY9	871 aa	Known RBP	11.43	□□□□□ -0.58
XRCC6-208	ENST00000478914	LAS1L	Q9Y4W2	734 aa	Known RBP	11.43	□□□□□ -0.58
XRCC6-208	ENST00000478914	NFKBIE	O00221	500 aa		11.42	□□□□□ -0.58
XRCC6-208	ENST00000478914	TAOK3	Q9H2K8	898 aa		11.42	□□□□□ -0.58
XRCC6-208	ENST00000478914	ZBTB3	Q9H5J0	574 aa		11.42	□□□□□ -0.58
XRCC6-208	ENST00000478914	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.42	□□□□□ -0.58
XRCC6-208	ENST00000478914	LTBP3	Q9NS15	1303 aa		11.41	□□□□□ -0.58
XRCC6-208	ENST00000478914	ZEB1	P37275	1124 aa	Predicted RBP	11.41	□□□□□ -0.58
XRCC6-208	ENST00000478914	DPY19L2	Q6NUT2	758 aa		11.41	□□□□□ -0.58
XRCC6-208	ENST00000478914	TTLL7	Q6ZT98	887 aa		11.41	□□□□□ -0.58
XRCC6-208	ENST00000478914	RBM46	Q8TBY0	533 aa	Known RBP	11.41	□□□□□ -0.58
XRCC6-208	ENST00000478914	RRAGC	Q9HB90	399 aa		11.41	□□□□□ -0.58
XRCC6-208	ENST00000478914	ADAMTS8	Q9UP79	889 aa		11.41	□□□□□ -0.58
XRCC6-208	ENST00000478914	WDR90	Q96KV7	1748 aa		11.4	□□□□□ -0.58
XRCC6-208	ENST00000478914	GLTPD2	A6NH11	291 aa		11.4	□□□□□ -0.58
XRCC6-208	ENST00000478914	GPT	P24298	496 aa		11.4	□□□□□ -0.58
XRCC6-208	ENST00000478914	ALDH1B1	P30837	517 aa		11.4	□□□□□ -0.58
XRCC6-208	ENST00000478914	ERFE	Q4G0M1	354 aa		11.4	□□□□□ -0.58
XRCC6-208	ENST00000478914	CCDC93	Q567U6	631 aa		11.4	□□□□□ -0.58
XRCC6-208	ENST00000478914	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.4	□□□□□ -0.58
XRCC6-208	ENST00000478914	PPP1R42	Q7Z4L9	355 aa		11.4	□□□□□ -0.58
XRCC6-208	ENST00000478914	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.4	□□□□□ -0.59
XRCC6-208	ENST00000478914	KLRG2	A4D1S0	409 aa	Predicted RBP	11.39	□□□□□ -0.59
XRCC6-208	ENST00000478914	VEGFA	P15692	232 aa	Predicted RBP	11.39	□□□□□ -0.59
XRCC6-208	ENST00000478914	APLP1	P51693	650 aa		11.39	□□□□□ -0.59
XRCC6-208	ENST00000478914	FSTL1	Q12841	308 aa		11.39	□□□□□ -0.59
XRCC6-208	ENST00000478914	NUTM1	Q86Y26	1132 aa		11.39	□□□□□ -0.59
XRCC6-208	ENST00000478914	NECTIN2	Q92692	538 aa		11.39	□□□□□ -0.59
XRCC6-208	ENST00000478914	RPGR	Q92834	1020 aa	Known RBP	11.39	□□□□□ -0.59
XRCC6-208	ENST00000478914	LAMB2	P55268	1798 aa		11.39	□□□□□ -0.59
XRCC6-208	ENST00000478914	CHL1	O00533	1208 aa		11.38	□□□□□ -0.59
XRCC6-208	ENST00000478914	PRELP	P51888	382 aa		11.38	□□□□□ -0.59
XRCC6-208	ENST00000478914	PARP10	Q53GL7	1025 aa		11.38	□□□□□ -0.59
XRCC6-208	ENST00000478914	TRIM35	Q9UPQ4	493 aa		11.38	□□□□□ -0.59
XRCC6-208	ENST00000478914	ABCC12	Q96J65	1359 aa		11.38	□□□□□ -0.59
XRCC6-208	ENST00000478914	UBN2	Q6ZU65	1347 aa		11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	RIC1	Q4ADV7	1423 aa		11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	ANXA1	P04083	346 aa		11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	CALD1	Q05682	793 aa	Known RBP	11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	AIMP1	Q12904	312 aa	Known RBP	11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	HSP90AB3P	Q58FF7	597 aa		11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	SUSD4	Q5VX71	490 aa		11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	ZNF34	Q8IZ26	560 aa		11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	RTKN2	Q8IZC4	609 aa		11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	SMC1B	Q8NDV3	1235 aa		11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	SCN4A	P35499	1836 aa		11.37	□□□□□ -0.59
XRCC6-208	ENST00000478914	HOXB7	P09629	217 aa		11.36	□□□□□ -0.59
XRCC6-208	ENST00000478914	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
XRCC6-208	ENST00000478914	PDIA6	Q15084	440 aa		11.36	□□□□□ -0.59
XRCC6-208	ENST00000478914	PROSER3	Q2NL68	480 aa		11.36	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms