RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 CHMLP26374 656 aa14.95□□□□□ -0.02
PTPRF-212ENST00000477970 COL15A1P39059 1388 aa14.95□□□□□ -0.02
PTPRF-212ENST00000477970 ST18O60284 1047 aa14.95□□□□□ -0.02
PTPRF-212ENST00000477970 IFNL2Q8IZJ0 200 aa14.95□□□□□ -0.02
PTPRF-212ENST00000477970 SPRYD3Q8NCJ5 442 aa14.95□□□□□ -0.02
PTPRF-212ENST00000477970 LINS1Q8NG48 757 aa14.95□□□□□ -0.02
PTPRF-212ENST00000477970 RBM42Q9BTD8 480 aaKnown RBP14.95□□□□□ -0.02
PTPRF-212ENST00000477970 TTC41PQ6P2S7 1318 aa14.94□□□□□ -0.02
PTPRF-212ENST00000477970 PDIA6Q15084 440 aa14.94□□□□□ -0.02
PTPRF-212ENST00000477970 ZNF790Q6PG37 636 aa14.94□□□□□ -0.02
PTPRF-212ENST00000477970 GBP4Q96PP9 640 aa14.94□□□□□ -0.02
PTPRF-212ENST00000477970 CWC22Q9HCG8 908 aaKnown RBP14.94□□□□□ -0.02
PTPRF-212ENST00000477970 MAP3K2Q9Y2U5 619 aa14.94□□□□□ -0.02
PTPRF-212ENST00000477970 COL5A2P05997 1499 aaPredicted RBP14.94□□□□□ -0.02
PTPRF-212ENST00000477970 SRGAP3O43295 1099 aa14.94□□□□□ -0.02
PTPRF-212ENST00000477970 PI4K2BQ8TCG2 481 aa14.94□□□□□ -0.02
PTPRF-212ENST00000477970 DCAF5Q96JK2 942 aa14.94□□□□□ -0.02
PTPRF-212ENST00000477970 MCM2P49736 904 aa14.93□□□□□ -0.02
PTPRF-212ENST00000477970 ZC3H6P61129 1189 aaKnown RBP14.93□□□□□ -0.02
PTPRF-212ENST00000477970 ERC1Q8IUD2 1116 aa14.93□□□□□ -0.02
PTPRF-212ENST00000477970 TNPO1Q92973 898 aaKnown RBP14.93□□□□□ -0.02
PTPRF-212ENST00000477970 ONECUT3O60422 494 aaPredicted RBP14.93□□□□□ -0.02
PTPRF-212ENST00000477970 SURF6O75683 361 aaKnown RBP14.93□□□□□ -0.02
PTPRF-212ENST00000477970 ARFGEF2Q9Y6D5 1785 aa14.93□□□□□ -0.02
PTPRF-212ENST00000477970 MCCP23508 829 aa14.92□□□□□ -0.02
PTPRF-212ENST00000477970 GJD4Q96KN9 370 aaPredicted RBP14.92□□□□□ -0.02
PTPRF-212ENST00000477970 PROSER3Q2NL68 480 aa14.92□□□□□ -0.02
PTPRF-212ENST00000477970 ISY1Q9ULR0 285 aaKnown RBP14.92□□□□□ -0.02
PTPRF-212ENST00000477970 SHANK3Q9BYB0 1731 aa14.91□□□□□ -0.02
PTPRF-212ENST00000477970 L1TD1Q5T7N2 865 aaKnown RBP14.91□□□□□ -0.02
PTPRF-212ENST00000477970 NLRP2Q9NX02 1062 aa14.91□□□□□ -0.02
PTPRF-212ENST00000477970 SKOR2Q2VWA4 1001 aaPredicted RBP14.91□□□□□ -0.02
PTPRF-212ENST00000477970 PRDM11Q9NQV5 511 aa14.91□□□□□ -0.02
PTPRF-212ENST00000477970 CYP2E1P05181 493 aaPredicted RBP14.91□□□□□ -0.02
PTPRF-212ENST00000477970 HSP90AA1P07900 732 aaKnown RBP14.9□□□□□ -0.02
PTPRF-212ENST00000477970 NUCB2P80303 420 aa14.9□□□□□ -0.02
PTPRF-212ENST00000477970 SPATA31A5Q5VU36 1347 aa14.9□□□□□ -0.02
PTPRF-212ENST00000477970 SPATA31A7Q8IWB4 1347 aa14.9□□□□□ -0.02
PTPRF-212ENST00000477970 AFDNP55196 1824 aaKnown RBP14.9□□□□□ -0.02
PTPRF-212ENST00000477970 GRM8O00222 908 aa14.9□□□□□ -0.02
PTPRF-212ENST00000477970 TRAK2O60296 914 aa14.9□□□□□ -0.02
PTPRF-212ENST00000477970 LARP1Q6PKG0 1096 aaKnown RBP14.9□□□□□ -0.02
PTPRF-212ENST00000477970 LRP10Q7Z4F1 713 aa14.9□□□□□ -0.02
PTPRF-212ENST00000477970 ERBB4Q15303 1308 aa14.9□□□□□ -0.02
PTPRF-212ENST00000477970 FSD2A1L4K1 749 aa14.89□□□□□ -0.03
PTPRF-212ENST00000477970 NUP188Q5SRE5 1749 aa14.89□□□□□ -0.03
PTPRF-212ENST00000477970 BTG4Q9NY30 223 aa14.89□□□□□ -0.03
PTPRF-212ENST00000477970 C9orf78Q9NZ63 289 aaPredicted RBP14.89□□□□□ -0.03
PTPRF-212ENST00000477970 ANXA1P04083 346 aa14.89□□□□□ -0.03
PTPRF-212ENST00000477970 CNTROBQ8N137 903 aa14.88□□□□□ -0.03
PTPRF-212ENST00000477970 PRAMEF22A3QJZ6 481 aa14.88□□□□□ -0.03
PTPRF-212ENST00000477970 GLRX3O76003 335 aaKnown RBP14.88□□□□□ -0.03
PTPRF-212ENST00000477970 SNRPA1P09661 255 aaKnown RBP14.88□□□□□ -0.03
PTPRF-212ENST00000477970 TRIM6-TRIM34B2RNG4 842 aa14.87□□□□□ -0.03
PTPRF-212ENST00000477970 CYP27B1O15528 508 aa14.87□□□□□ -0.03
PTPRF-212ENST00000477970 TSHZ3Q63HK5 1081 aa14.87□□□□□ -0.03
PTPRF-212ENST00000477970 IL1RAPL2Q9NP60 686 aa14.87□□□□□ -0.03
PTPRF-212ENST00000477970 RILPL2Q969X0 211 aa14.87□□□□□ -0.03
PTPRF-212ENST00000477970 METTL22Q9BUU2 404 aaPredicted RBP14.87□□□□□ -0.03
PTPRF-212ENST00000477970 WDR17Q8IZU2 1322 aa14.87□□□□□ -0.03
PTPRF-212ENST00000477970 FMNL2Q96PY5 1086 aa14.87□□□□□ -0.03
PTPRF-212ENST00000477970 SPATA31A1Q5TZJ5 1347 aa14.87□□□□□ -0.03
PTPRF-212ENST00000477970 HSPA4P34932 840 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 NUTM1Q86Y26 1132 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 NFATC2IPQ8NCF5 419 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 KAZALD1Q96I82 304 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 THRAP3Q9Y2W1 955 aaKnown RBP14.86□□□□□ -0.03
PTPRF-212ENST00000477970 SGSM2O43147 1006 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 CUL4AQ13619 759 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 CLASRPQ8N2M8 674 aaKnown RBP14.86□□□□□ -0.03
PTPRF-212ENST00000477970 GPATCH3Q96I76 525 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 RAD50Q92878 1312 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 IGKV5-2P06315 115 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 CSB-PGBD3P0DP91 1061 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 NKX1-1Q15270 411 aaPredicted RBP14.86□□□□□ -0.03
PTPRF-212ENST00000477970 BARGINQ6ZT62 677 aa14.86□□□□□ -0.03
PTPRF-212ENST00000477970 INTS4Q96HW7 963 aaKnown RBP14.86□□□□□ -0.03
PTPRF-212ENST00000477970 KCPQ6ZWJ8 1503 aa14.85□□□□□ -0.03
PTPRF-212ENST00000477970 PCDH11XQ9BZA7 1347 aa14.85□□□□□ -0.03
PTPRF-212ENST00000477970 PCDH11YQ9BZA8 1340 aa14.85□□□□□ -0.03
PTPRF-212ENST00000477970 NEURL1BA8MQ27 555 aa14.85□□□□□ -0.03
PTPRF-212ENST00000477970 NEXNQ0ZGT2 675 aa14.85□□□□□ -0.03
PTPRF-212ENST00000477970 CWF19L2Q2TBE0 894 aaKnown RBP14.85□□□□□ -0.03
PTPRF-212ENST00000477970 SUCLG2Q96I99 432 aa14.85□□□□□ -0.03
PTPRF-212ENST00000477970 ZNF496Q96IT1 587 aaPredicted RBP14.85□□□□□ -0.03
PTPRF-212ENST00000477970 TTC5Q8N0Z6 440 aa14.84□□□□□ -0.03
PTPRF-212ENST00000477970 ECHDC1Q9NTX5 307 aa14.84□□□□□ -0.03
PTPRF-212ENST00000477970 TNS2Q63HR2 1409 aa14.84□□□□□ -0.03
PTPRF-212ENST00000477970 GCKRQ14397 625 aa14.84□□□□□ -0.03
PTPRF-212ENST00000477970 ANO2Q9NQ90 1003 aa14.84□□□□□ -0.03
PTPRF-212ENST00000477970 SNRKQ9NRH2 765 aa14.84□□□□□ -0.03
PTPRF-212ENST00000477970 ERVV-2B6SEH9 535 aa14.83□□□□□ -0.04
PTPRF-212ENST00000477970 GOLGA6L22H0YM25 854 aa14.83□□□□□ -0.04
PTPRF-212ENST00000477970 SLC39A6Q13433 755 aa14.83□□□□□ -0.04
PTPRF-212ENST00000477970 RIC3Q7Z5B4 369 aa14.83□□□□□ -0.04
PTPRF-212ENST00000477970 TJP1Q07157 1748 aa14.83□□□□□ -0.04
PTPRF-212ENST00000477970 SSFA2P28290 1259 aa14.83□□□□□ -0.04
PTPRF-212ENST00000477970 CHRNA2Q15822 529 aa14.83□□□□□ -0.04
PTPRF-212ENST00000477970 BICC1Q9H694 974 aaKnown RBP14.83□□□□□ -0.04
PTPRF-212ENST00000477970 DISP2A7MBM2 1401 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms