RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 DPYDQ12882 1025 aa9.37□□□□□ -0.91
PTCD3-211ENST00000476215 ARSJQ5FYB0 599 aaPredicted RBP9.37□□□□□ -0.91
PTCD3-211ENST00000476215 SH3PXD2AQ5TCZ1 1133 aa9.37□□□□□ -0.91
PTCD3-211ENST00000476215 KLRG1Q96E93 195 aa9.37□□□□□ -0.91
PTCD3-211ENST00000476215 OXCT2Q9BYC2 517 aaPredicted RBP9.37□□□□□ -0.91
PTCD3-211ENST00000476215 RBM19Q9Y4C8 960 aaKnown RBP9.37□□□□□ -0.91
PTCD3-211ENST00000476215 OIP5O43482 229 aa9.36□□□□□ -0.91
PTCD3-211ENST00000476215 ATG7O95352 703 aa9.36□□□□□ -0.91
PTCD3-211ENST00000476215 MAP3K10Q02779 954 aa9.36□□□□□ -0.91
PTCD3-211ENST00000476215 LAMC2Q13753 1193 aa9.36□□□□□ -0.91
PTCD3-211ENST00000476215 C2orf49Q9BVC5 232 aaPredicted RBP9.36□□□□□ -0.91
PTCD3-211ENST00000476215 GDF2Q9UK05 429 aaPredicted RBP9.36□□□□□ -0.91
PTCD3-211ENST00000476215 MAPTP10636 758 aaKnown RBP9.35□□□□□ -0.91
PTCD3-211ENST00000476215 CTBSQ01459 385 aa9.35□□□□□ -0.91
PTCD3-211ENST00000476215 AVENQ9NQS1 362 aaPredicted RBP9.35□□□□□ -0.91
PTCD3-211ENST00000476215 ENAMQ9NRM1 1142 aa9.35□□□□□ -0.91
PTCD3-211ENST00000476215 ATAD2Q6PL18 1390 aa9.35□□□□□ -0.91
PTCD3-211ENST00000476215 RNF225M0QZC1 329 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-211ENST00000476215 ARAFP10398 606 aa9.34□□□□□ -0.91
PTCD3-211ENST00000476215 IGFBP4P22692 258 aa9.34□□□□□ -0.91
PTCD3-211ENST00000476215 RETREG2Q8NC44 543 aa9.34□□□□□ -0.91
PTCD3-211ENST00000476215 ZNF232Q9UNY5 417 aa9.34□□□□□ -0.91
PTCD3-211ENST00000476215 PPP1R12BO60237 982 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-211ENST00000476215 ELOAQ14241 798 aaKnown RBP9.33□□□□□ -0.92
PTCD3-211ENST00000476215 SLCO4C1Q6ZQN7 724 aa9.33□□□□□ -0.92
PTCD3-211ENST00000476215 GOLGA6L1Q8N7Z2 621 aa9.33□□□□□ -0.92
PTCD3-211ENST00000476215 NOVA2Q9UNW9 492 aaKnown RBP9.33□□□□□ -0.92
PTCD3-211ENST00000476215 CHMP3Q9Y3E7 222 aa9.33□□□□□ -0.92
PTCD3-211ENST00000476215 BMP4P12644 408 aa9.32□□□□□ -0.92
PTCD3-211ENST00000476215 BICDL1Q6ZP65 573 aa9.32□□□□□ -0.92
PTCD3-211ENST00000476215 C1orf229Q6ZS94 237 aaPredicted RBP9.32□□□□□ -0.92
PTCD3-211ENST00000476215 PHACTR1Q9C0D0 580 aa9.32□□□□□ -0.92
PTCD3-211ENST00000476215 DCDC2BA2VCK2 349 aa9.31□□□□□ -0.92
PTCD3-211ENST00000476215 WEE1P30291 646 aa9.31□□□□□ -0.92
PTCD3-211ENST00000476215 RHPN1Q8TCX5 695 aa9.31□□□□□ -0.92
PTCD3-211ENST00000476215 SCG3Q8WXD2 468 aaKnown RBP9.31□□□□□ -0.92
PTCD3-211ENST00000476215 ZMIZ1Q9ULJ6 1067 aa9.31□□□□□ -0.92
PTCD3-211ENST00000476215 FAM200AQ8TCP9 573 aa9.3□□□□□ -0.92
PTCD3-211ENST00000476215 SCARF2Q96GP6 870 aaPredicted RBP9.3□□□□□ -0.92
PTCD3-211ENST00000476215 GJA3Q9Y6H8 435 aa9.3□□□□□ -0.92
PTCD3-211ENST00000476215 KHNYNO15037 678 aaKnown RBP9.29□□□□□ -0.92
PTCD3-211ENST00000476215 KCNQ4P56696 695 aa9.29□□□□□ -0.92
PTCD3-211ENST00000476215 LRRC69Q6ZNQ3 347 aa9.29□□□□□ -0.92
PTCD3-211ENST00000476215 ALDH16A1Q8IZ83 802 aa9.29□□□□□ -0.92
PTCD3-211ENST00000476215 STK32AQ8WU08 396 aa9.29□□□□□ -0.92
PTCD3-211ENST00000476215 STRN4Q9NRL3 753 aa9.29□□□□□ -0.92
PTCD3-211ENST00000476215 MARK1Q9P0L2 795 aa9.29□□□□□ -0.92
PTCD3-211ENST00000476215 SHISA8B8ZZ34 492 aa9.28□□□□□ -0.92
PTCD3-211ENST00000476215 FOXO3O43524 673 aa9.28□□□□□ -0.92
PTCD3-211ENST00000476215 CD33P20138 364 aa9.28□□□□□ -0.92
PTCD3-211ENST00000476215 MARSP56192 900 aaKnown RBP9.28□□□□□ -0.92
PTCD3-211ENST00000476215 MDFIQ99750 246 aa9.28□□□□□ -0.92
PTCD3-211ENST00000476215 ANKIB1Q9P2G1 1089 aa9.28□□□□□ -0.92
PTCD3-211ENST00000476215 KLF15Q9UIH9 416 aa9.28□□□□□ -0.92
PTCD3-211ENST00000476215 HCN4Q9Y3Q4 1203 aa9.28□□□□□ -0.92
PTCD3-211ENST00000476215 EPXP11678 715 aa9.27□□□□□ -0.93
PTCD3-211ENST00000476215 HOXB4P17483 251 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-211ENST00000476215 HIF1AQ16665 826 aa9.27□□□□□ -0.93
PTCD3-211ENST00000476215 RTN1Q16799 776 aa9.27□□□□□ -0.93
PTCD3-211ENST00000476215 SWI5Q1ZZU3 235 aa9.27□□□□□ -0.93
PTCD3-211ENST00000476215 TMEM164Q5U3C3 297 aa9.27□□□□□ -0.93
PTCD3-211ENST00000476215 ZNF468Q5VIY5 522 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-211ENST00000476215 IER5Q5VY09 327 aa9.27□□□□□ -0.93
PTCD3-211ENST00000476215 KANK3Q6NY19 840 aa9.27□□□□□ -0.93
PTCD3-211ENST00000476215 EDARADDQ8WWZ3 215 aa9.27□□□□□ -0.93
PTCD3-211ENST00000476215 GGA1Q9UJY5 639 aa9.27□□□□□ -0.93
PTCD3-211ENST00000476215 ADH6P28332 368 aa9.26□□□□□ -0.93
PTCD3-211ENST00000476215 RASSF7Q02833 373 aa9.26□□□□□ -0.93
PTCD3-211ENST00000476215 TYRO3Q06418 890 aa9.26□□□□□ -0.93
PTCD3-211ENST00000476215 FAM69CQ0P6D2 419 aa9.26□□□□□ -0.93
PTCD3-211ENST00000476215 GALNT6Q8NCL4 622 aa9.26□□□□□ -0.93
PTCD3-211ENST00000476215 SUSD3Q96L08 255 aa9.26□□□□□ -0.93
PTCD3-211ENST00000476215 HINFPQ9BQA5 517 aa9.26□□□□□ -0.93
PTCD3-211ENST00000476215 CARNS1A5YM72 827 aa9.25□□□□□ -0.93
PTCD3-211ENST00000476215 PDE4CQ08493 712 aa9.25□□□□□ -0.93
PTCD3-211ENST00000476215 USTQ9Y2C2 406 aa9.25□□□□□ -0.93
PTCD3-211ENST00000476215 PDIA4P13667 645 aaKnown RBP9.24□□□□□ -0.93
PTCD3-211ENST00000476215 FCHSD1Q86WN1 690 aa9.24□□□□□ -0.93
PTCD3-211ENST00000476215 ZNF280CQ8ND82 737 aa9.24□□□□□ -0.93
PTCD3-211ENST00000476215 NEDD1Q8NHV4 660 aa9.24□□□□□ -0.93
PTCD3-211ENST00000476215 MYO19Q96H55 970 aa9.24□□□□□ -0.93
PTCD3-211ENST00000476215 HSH2DQ96JZ2 352 aa9.24□□□□□ -0.93
PTCD3-211ENST00000476215 TMEM88BA6NKF7 163 aa9.23□□□□□ -0.93
PTCD3-211ENST00000476215 PHF20L1A8MW92 1017 aa9.23□□□□□ -0.93
PTCD3-211ENST00000476215 BEND7Q8N7W2 519 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-211ENST00000476215 NEUROD4Q9HD90 331 aa9.23□□□□□ -0.93
PTCD3-211ENST00000476215 DMGDHQ9UI17 866 aaKnown RBP9.23□□□□□ -0.93
PTCD3-211ENST00000476215 DNMT3AQ9Y6K1 912 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-211ENST00000476215 NEURL1BA8MQ27 555 aa9.22□□□□□ -0.93
PTCD3-211ENST00000476215 TGFBR3LH3BV60 316 aa9.22□□□□□ -0.93
PTCD3-211ENST00000476215 SFSWAPQ12872 951 aaKnown RBP9.22□□□□□ -0.93
PTCD3-211ENST00000476215 TMEM151AQ8N4L1 468 aa9.22□□□□□ -0.93
PTCD3-211ENST00000476215 BRD7Q9NPI1 651 aa9.22□□□□□ -0.93
PTCD3-211ENST00000476215 SIN3BO75182 1162 aa9.21□□□□□ -0.94
PTCD3-211ENST00000476215 IRS1P35568 1242 aa9.21□□□□□ -0.94
PTCD3-211ENST00000476215 OCLNQ16625 522 aa9.21□□□□□ -0.94
PTCD3-211ENST00000476215 BTLAQ7Z6A9 289 aa9.21□□□□□ -0.94
PTCD3-211ENST00000476215 CHMP7Q8WUX9 453 aaPredicted RBP9.21□□□□□ -0.94
PTCD3-211ENST00000476215 BTBD6Q96KE9 485 aa9.21□□□□□ -0.94
PTCD3-211ENST00000476215 QTRT2Q9H974 415 aaKnown RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms