RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	PCDH11X	Q9BZA7	1347 aa		10.32	□□□□□ -0.76
HDAC9-223	ENST00000476135	PCDH11Y	Q9BZA8	1340 aa		10.32	□□□□□ -0.76
HDAC9-223	ENST00000476135	CCDC85C	A6NKD9	419 aa		10.31	□□□□□ -0.76
HDAC9-223	ENST00000476135	PARP3	Q9Y6F1	533 aa		10.31	□□□□□ -0.76
HDAC9-223	ENST00000476135	CD163L1	Q9NR16	1453 aa		10.3	□□□□□ -0.76
HDAC9-223	ENST00000476135	POTEC	B2RU33	542 aa		10.3	□□□□□ -0.76
HDAC9-223	ENST00000476135	HSPA8	P11142	646 aa	Known RBP	10.3	□□□□□ -0.76
HDAC9-223	ENST00000476135	LMNB1	P20700	586 aa		10.3	□□□□□ -0.76
HDAC9-223	ENST00000476135	HOXC9	P31274	260 aa		10.3	□□□□□ -0.76
HDAC9-223	ENST00000476135	TRAPPC3L	Q5T215	181 aa		10.3	□□□□□ -0.76
HDAC9-223	ENST00000476135	RAPGEF4	Q8WZA2	1011 aa		10.3	□□□□□ -0.76
HDAC9-223	ENST00000476135	PIGB	Q92521	554 aa		10.3	□□□□□ -0.76
HDAC9-223	ENST00000476135	TAT	P17735	454 aa	Predicted RBP	10.29	□□□□□ -0.76
HDAC9-223	ENST00000476135	ITPK1	Q13572	414 aa		10.29	□□□□□ -0.76
HDAC9-223	ENST00000476135	EDC4	Q6P2E9	1401 aa	Known RBP	10.29	□□□□□ -0.76
HDAC9-223	ENST00000476135	TIAM2	Q8IVF5	1701 aa		10.29	□□□□□ -0.76
HDAC9-223	ENST00000476135	CCDC88A	Q3V6T2	1871 aa		10.28	□□□□□ -0.76
HDAC9-223	ENST00000476135	TBC1D12	O60347	775 aa		10.28	□□□□□ -0.76
HDAC9-223	ENST00000476135	GYS1	P13807	737 aa		10.28	□□□□□ -0.76
HDAC9-223	ENST00000476135	VEGFB	P49765	207 aa		10.28	□□□□□ -0.76
HDAC9-223	ENST00000476135	RASSF7	Q02833	373 aa		10.28	□□□□□ -0.76
HDAC9-223	ENST00000476135	NBPF6	Q5VWK0	638 aa		10.28	□□□□□ -0.76
HDAC9-223	ENST00000476135	NBPF4	Q96M43	638 aa		10.28	□□□□□ -0.76
HDAC9-223	ENST00000476135	RTCB	Q9Y3I0	505 aa	Known RBP	10.28	□□□□□ -0.76
HDAC9-223	ENST00000476135	MAP3K19	Q56UN5	1328 aa		10.28	□□□□□ -0.76
HDAC9-223	ENST00000476135	CYP27B1	O15528	508 aa		10.27	□□□□□ -0.77
HDAC9-223	ENST00000476135	ATP6V1A	P38606	617 aa		10.27	□□□□□ -0.77
HDAC9-223	ENST00000476135	AMPH	P49418	695 aa		10.27	□□□□□ -0.77
HDAC9-223	ENST00000476135	PPP1R15B	Q5SWA1	713 aa		10.27	□□□□□ -0.77
HDAC9-223	ENST00000476135	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.27	□□□□□ -0.77
HDAC9-223	ENST00000476135	OXER1	Q8TDS5	423 aa		10.27	□□□□□ -0.77
HDAC9-223	ENST00000476135	RAB3GAP2	Q9H2M9	1393 aa		10.26	□□□□□ -0.77
HDAC9-223	ENST00000476135	TNRC18	O15417	2968 aa	Predicted RBP	10.26	□□□□□ -0.77
HDAC9-223	ENST00000476135	RC3H1	Q5TC82	1133 aa	Known RBP	10.26	□□□□□ -0.77
HDAC9-223	ENST00000476135	ARHGEF1	Q92888	912 aa	Known RBP	10.26	□□□□□ -0.77
HDAC9-223	ENST00000476135	PASK	Q96RG2	1323 aa		10.26	□□□□□ -0.77
HDAC9-223	ENST00000476135	RTL1	A6NKG5	1358 aa		10.26	□□□□□ -0.77
HDAC9-223	ENST00000476135	ZNF831	Q5JPB2	1677 aa		10.25	□□□□□ -0.77
HDAC9-223	ENST00000476135	ARHGAP33	O14559	1287 aa		10.25	□□□□□ -0.77
HDAC9-223	ENST00000476135	PDE4A	P27815	886 aa		10.25	□□□□□ -0.77
HDAC9-223	ENST00000476135	CHRNA5	P30532	468 aa		10.25	□□□□□ -0.77
HDAC9-223	ENST00000476135	RFC4	P35249	363 aa		10.25	□□□□□ -0.77
HDAC9-223	ENST00000476135	MAP2K1	Q02750	393 aa	Predicted RBP	10.25	□□□□□ -0.77
HDAC9-223	ENST00000476135	USHBP1	Q8N6Y0	703 aa		10.25	□□□□□ -0.77
HDAC9-223	ENST00000476135	TMEM88B	A6NKF7	163 aa		10.24	□□□□□ -0.77
HDAC9-223	ENST00000476135	ASAP1	Q9ULH1	1129 aa		10.24	□□□□□ -0.77
HDAC9-223	ENST00000476135	SMG6	Q86US8	1419 aa	Known RBP	10.24	□□□□□ -0.77
HDAC9-223	ENST00000476135	DICER1	Q9UPY3	1922 aa	Known RBP	10.23	□□□□□ -0.77
HDAC9-223	ENST00000476135	PDE4DIP	Q5VU43	2346 aa		10.23	□□□□□ -0.77
HDAC9-223	ENST00000476135	RPS6KA4	O75676	772 aa		10.23	□□□□□ -0.77
HDAC9-223	ENST00000476135	PPP4R3B	Q5MIZ7	849 aa		10.23	□□□□□ -0.77
HDAC9-223	ENST00000476135	TMOD3	Q9NYL9	352 aa		10.23	□□□□□ -0.77
HDAC9-223	ENST00000476135	COL5A3	P25940	1745 aa	Predicted RBP	10.22	□□□□□ -0.77
HDAC9-223	ENST00000476135	DLEC1	Q9Y238	1755 aa		10.22	□□□□□ -0.77
HDAC9-223	ENST00000476135	RASSF10	A6NK89	507 aa		10.22	□□□□□ -0.77
HDAC9-223	ENST00000476135	COG3	Q96JB2	828 aa		10.22	□□□□□ -0.77
HDAC9-223	ENST00000476135	TERF2IP	Q9NYB0	399 aa		10.22	□□□□□ -0.77
HDAC9-223	ENST00000476135	CNTNAP4	Q9C0A0	1308 aa		10.22	□□□□□ -0.77
HDAC9-223	ENST00000476135	KDR	P35968	1356 aa		10.22	□□□□□ -0.77
HDAC9-223	ENST00000476135	PSEN2	P49810	448 aa		10.21	□□□□□ -0.77
HDAC9-223	ENST00000476135	DDR1	Q08345	913 aa		10.21	□□□□□ -0.77
HDAC9-223	ENST00000476135	DEFB115	Q30KQ5	88 aa		10.21	□□□□□ -0.77
HDAC9-223	ENST00000476135	ADGRD1	Q6QNK2	874 aa		10.21	□□□□□ -0.77
HDAC9-223	ENST00000476135	LDHD	Q86WU2	507 aa		10.21	□□□□□ -0.77
HDAC9-223	ENST00000476135	TMC1	Q8TDI8	760 aa		10.21	□□□□□ -0.77
HDAC9-223	ENST00000476135	SLC12A5	Q9H2X9	1139 aa		10.21	□□□□□ -0.77
HDAC9-223	ENST00000476135	ATG3	Q9NT62	314 aa		10.21	□□□□□ -0.77
HDAC9-223	ENST00000476135		A0A1W2PP64	1363 aa		10.21	□□□□□ -0.78
HDAC9-223	ENST00000476135	NFKBIE	O00221	500 aa		10.2	□□□□□ -0.78
HDAC9-223	ENST00000476135	ITGBL1	O95965	494 aa	Predicted RBP	10.2	□□□□□ -0.78
HDAC9-223	ENST00000476135	FBLN1	P23142	703 aa		10.2	□□□□□ -0.78
HDAC9-223	ENST00000476135	DMRTA1	Q5VZB9	504 aa		10.2	□□□□□ -0.78
HDAC9-223	ENST00000476135	LARP6	Q9BRS8	491 aa	Known RBP	10.2	□□□□□ -0.78
HDAC9-223	ENST00000476135	WDR33	Q9C0J8	1336 aa	Known RBP	10.2	□□□□□ -0.78
HDAC9-223	ENST00000476135	MYH14	Q7Z406	1995 aa	Known RBP	10.19	□□□□□ -0.78
HDAC9-223	ENST00000476135	POLRMT	O00411	1230 aa	Known RBP	10.19	□□□□□ -0.78
HDAC9-223	ENST00000476135	TM4SF1	P30408	202 aa		10.19	□□□□□ -0.78
HDAC9-223	ENST00000476135	TTLL6	Q8N841	843 aa		10.19	□□□□□ -0.78
HDAC9-223	ENST00000476135	CFAP44	Q96MT7	982 aa		10.19	□□□□□ -0.78
HDAC9-223	ENST00000476135	SLC4A9	Q96Q91	983 aa		10.19	□□□□□ -0.78
HDAC9-223	ENST00000476135	SPG7	Q9UQ90	795 aa		10.19	□□□□□ -0.78
HDAC9-223	ENST00000476135	SCN4A	P35499	1836 aa		10.19	□□□□□ -0.78
HDAC9-223	ENST00000476135	THSD7B	Q9C0I4	1608 aa		10.18	□□□□□ -0.78
HDAC9-223	ENST00000476135	INSR	P06213	1382 aa		10.18	□□□□□ -0.78
HDAC9-223	ENST00000476135	USP42	Q9H9J4	1324 aa	Known RBP	10.18	□□□□□ -0.78
HDAC9-223	ENST00000476135	IQCA1L	A6NCM1	817 aa		10.18	□□□□□ -0.78
HDAC9-223	ENST00000476135	ERFE	Q4G0M1	354 aa		10.18	□□□□□ -0.78
HDAC9-223	ENST00000476135	DDX27	Q96GQ7	796 aa	Known RBP	10.18	□□□□□ -0.78
HDAC9-223	ENST00000476135	RRS1	Q15050	365 aa	Known RBP	10.17	□□□□□ -0.78
HDAC9-223	ENST00000476135	PRPF38B	Q5VTL8	546 aa	Known RBP	10.17	□□□□□ -0.78
HDAC9-223	ENST00000476135	BEGAIN	Q9BUH8	593 aa		10.17	□□□□□ -0.78
HDAC9-223	ENST00000476135	MCOLN1	Q9GZU1	580 aa		10.17	□□□□□ -0.78
HDAC9-223	ENST00000476135	SRP68	Q9UHB9	627 aa	Known RBP	10.17	□□□□□ -0.78
HDAC9-223	ENST00000476135	FER1L6	Q2WGJ9	1857 aa		10.17	□□□□□ -0.78
HDAC9-223	ENST00000476135	AFDN	P55196	1824 aa	Known RBP	10.17	□□□□□ -0.78
HDAC9-223	ENST00000476135	NCAPD2	Q15021	1401 aa		10.16	□□□□□ -0.78
HDAC9-223	ENST00000476135	NRXN2	Q9P2S2	1712 aa		10.16	□□□□□ -0.78
HDAC9-223	ENST00000476135	TK2	O00142	265 aa		10.16	□□□□□ -0.78
HDAC9-223	ENST00000476135	DDN	O94850	711 aa	Predicted RBP	10.16	□□□□□ -0.78
HDAC9-223	ENST00000476135	MFSD10	Q14728	455 aa		10.16	□□□□□ -0.78

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