RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ADARB2-AS1A8MUL3 147 aa8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 NOS2P35228 1153 aa8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 EML3Q32P44 896 aa8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 TPRNQ4KMQ1 711 aa8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 NKAPLQ5M9Q1 402 aa8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 TNS4Q8IZW8 715 aa8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 POM121Q96HA1 1249 aa8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 KRTAP9-2Q9BYQ4 174 aa8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 SEMA6BQ9H3T3 888 aa8.58□□□□□ -1.04
CCDC88A-212ENST00000474059 ZBTB7BO15156 539 aaPredicted RBP8.57□□□□□ -1.04
CCDC88A-212ENST00000474059 SIN3BO75182 1162 aa8.57□□□□□ -1.04
CCDC88A-212ENST00000474059 BICDL1Q6ZP65 573 aa8.57□□□□□ -1.04
CCDC88A-212ENST00000474059 C8orf86Q6ZUL3 223 aa8.57□□□□□ -1.04
CCDC88A-212ENST00000474059 DEPDC4Q8N2C3 294 aa8.57□□□□□ -1.04
CCDC88A-212ENST00000474059 NFATC2IPQ8NCF5 419 aa8.57□□□□□ -1.04
CCDC88A-212ENST00000474059 NOD1Q9Y239 953 aa8.57□□□□□ -1.04
CCDC88A-212ENST00000474059 BACH1O14867 736 aa8.56□□□□□ -1.04
CCDC88A-212ENST00000474059 ALBP02768 609 aa8.56□□□□□ -1.04
CCDC88A-212ENST00000474059 GATA4P43694 442 aa8.56□□□□□ -1.04
CCDC88A-212ENST00000474059 TNFRSF25Q93038 417 aa8.56□□□□□ -1.04
CCDC88A-212ENST00000474059 GJA3Q9Y6H8 435 aa8.56□□□□□ -1.04
CCDC88A-212ENST00000474059 USP17L5A8MUK1 530 aa8.55□□□□□ -1.04
CCDC88A-212ENST00000474059 FAM229AH3BQW9 127 aa8.55□□□□□ -1.04
CCDC88A-212ENST00000474059 NID1P14543 1247 aa8.55□□□□□ -1.04
CCDC88A-212ENST00000474059 PRDM6Q9NQX0 595 aa8.55□□□□□ -1.04
CCDC88A-212ENST00000474059 TPSG1Q9NRR2 321 aa8.55□□□□□ -1.04
CCDC88A-212ENST00000474059 C20orf204Q6ZNR8 217 aa8.54□□□□□ -1.04
CCDC88A-212ENST00000474059 KRTAP9-6A0A140TA67 174 aa8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 POM121CA8CG34 1229 aa8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 M0R082 166 aa8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 LZTS3O60299 673 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 DKK1O94907 266 aa8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 CLDN10P78369 228 aa8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 RAB44Q7Z6P3 723 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 MICALL1Q8N3F8 863 aa8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 ZNF417Q8TAU3 575 aa8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 HSH2DQ96JZ2 352 aa8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 UCN2Q96RP3 112 aa8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 ZNF587Q96SQ5 575 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 GPC6Q9Y625 555 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-212ENST00000474059 PSMG3-AS1Q96PY0 264 aa8.52□□□□□ -1.05
CCDC88A-212ENST00000474059 TSPAN10Q9H1Z9 355 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-212ENST00000474059 SERTM1A2A2V5 107 aa8.51□□□□□ -1.05
CCDC88A-212ENST00000474059 HIRAP54198 1017 aaPredicted RBP8.51□□□□□ -1.05
CCDC88A-212ENST00000474059 KCNQ4P56696 695 aa8.51□□□□□ -1.05
CCDC88A-212ENST00000474059 SPEM2Q0P670 501 aa8.51□□□□□ -1.05
CCDC88A-212ENST00000474059 ZNF280CQ8ND82 737 aa8.51□□□□□ -1.05
CCDC88A-212ENST00000474059 C21orf2O43822 256 aa8.5□□□□□ -1.05
CCDC88A-212ENST00000474059 ADH7P40394 386 aa8.5□□□□□ -1.05
CCDC88A-212ENST00000474059 PSME1Q06323 249 aa8.5□□□□□ -1.05
CCDC88A-212ENST00000474059 TYRO3Q06418 890 aa8.5□□□□□ -1.05
CCDC88A-212ENST00000474059 ZMYM1Q5SVZ6 1142 aa8.5□□□□□ -1.05
CCDC88A-212ENST00000474059 TPCN2Q8NHX9 752 aa8.5□□□□□ -1.05
CCDC88A-212ENST00000474059 ZNF232Q9UNY5 417 aa8.5□□□□□ -1.05
CCDC88A-212ENST00000474059 DYRK3O43781 588 aa8.49□□□□□ -1.05
CCDC88A-212ENST00000474059 ILDR2Q71H61 639 aa8.49□□□□□ -1.05
CCDC88A-212ENST00000474059 PLEKHM2Q8IWE5 1019 aa8.49□□□□□ -1.05
CCDC88A-212ENST00000474059 RHPN1Q8TCX5 695 aa8.49□□□□□ -1.05
CCDC88A-212ENST00000474059 ALAS2P22557 587 aa8.48□□□□□ -1.05
CCDC88A-212ENST00000474059 PSMA6P60900 246 aaKnown RBP8.48□□□□□ -1.05
CCDC88A-212ENST00000474059 GRIK4Q16099 956 aa8.48□□□□□ -1.05
CCDC88A-212ENST00000474059 C1orf53Q5VUE5 145 aa8.48□□□□□ -1.05
CCDC88A-212ENST00000474059 PHACTR1Q9C0D0 580 aa8.48□□□□□ -1.05
CCDC88A-212ENST00000474059 BRD7Q9NPI1 651 aa8.48□□□□□ -1.05
CCDC88A-212ENST00000474059 HCN4Q9Y3Q4 1203 aa8.48□□□□□ -1.05
CCDC88A-212ENST00000474059 USP17L3A6NCW0 530 aa8.47□□□□□ -1.05
CCDC88A-212ENST00000474059 USP17L4A6NCW7 530 aa8.47□□□□□ -1.05
CCDC88A-212ENST00000474059 CCDC102BQ68D86 513 aa8.47□□□□□ -1.05
CCDC88A-212ENST00000474059 USP17L2Q6R6M4 530 aa8.47□□□□□ -1.05
CCDC88A-212ENST00000474059 USP17L1Q7RTZ2 530 aa8.47□□□□□ -1.05
CCDC88A-212ENST00000474059 PRRT3Q5FWE3 981 aa8.46□□□□□ -1.06
CCDC88A-212ENST00000474059 SUSD3Q96L08 255 aa8.46□□□□□ -1.06
CCDC88A-212ENST00000474059 SELPP16109 830 aa8.45□□□□□ -1.06
CCDC88A-212ENST00000474059 SPDYE3A6NKU9 549 aa8.44□□□□□ -1.06
CCDC88A-212ENST00000474059 SFI1A8K8P3 1242 aa8.44□□□□□ -1.06
CCDC88A-212ENST00000474059 M0R2N6 131 aa8.44□□□□□ -1.06
CCDC88A-212ENST00000474059 GRNP28799 593 aaKnown RBP8.44□□□□□ -1.06
CCDC88A-212ENST00000474059 TRIM50Q86XT4 487 aa8.44□□□□□ -1.06
CCDC88A-212ENST00000474059 SIX5Q8N196 739 aa8.44□□□□□ -1.06
CCDC88A-212ENST00000474059 TSEN2Q8NCE0 465 aaKnown RBP8.44□□□□□ -1.06
CCDC88A-212ENST00000474059 CEP63Q96MT8 703 aa8.44□□□□□ -1.06
CCDC88A-212ENST00000474059 KCNH4Q9UQ05 1017 aa8.44□□□□□ -1.06
CCDC88A-212ENST00000474059 OGFOD1Q8N543 542 aa8.43□□□□□ -1.06
CCDC88A-212ENST00000474059 NAGPAQ9UK23 515 aa8.43□□□□□ -1.06
CCDC88A-212ENST00000474059 A0A0A0MRY4 1105 aa8.42□□□□□ -1.06
CCDC88A-212ENST00000474059 ATP9BO43861 1147 aa8.42□□□□□ -1.06
CCDC88A-212ENST00000474059 APBA3O96018 575 aa8.42□□□□□ -1.06
CCDC88A-212ENST00000474059 ADGRE1Q14246 886 aa8.42□□□□□ -1.06
CCDC88A-212ENST00000474059 MBTPS1Q14703 1052 aa8.42□□□□□ -1.06
CCDC88A-212ENST00000474059 TRIM28Q13263 835 aaKnown RBP8.41□□□□□ -1.06
CCDC88A-212ENST00000474059 PRSS36Q5K4E3 855 aa8.41□□□□□ -1.06
CCDC88A-212ENST00000474059 LARGE2Q8N3Y3 721 aa8.41□□□□□ -1.06
CCDC88A-212ENST00000474059 BHMTQ93088 406 aa8.41□□□□□ -1.06
CCDC88A-212ENST00000474059 C2orf49Q9BVC5 232 aaPredicted RBP8.41□□□□□ -1.06
CCDC88A-212ENST00000474059 NEUROD4Q9HD90 331 aa8.41□□□□□ -1.06
CCDC88A-212ENST00000474059 SLC6A14Q9UN76 642 aa8.41□□□□□ -1.06
CCDC88A-212ENST00000474059 SHISA2Q6UWI4 295 aa8.4□□□□□ -1.06
CCDC88A-212ENST00000474059 BTLAQ7Z6A9 289 aa8.4□□□□□ -1.06
CCDC88A-212ENST00000474059 KRTAP1-3Q8IUG1 177 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms