RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PDZRN3Q9UPQ7 1066 aa24.86■■□□□ 1.57
CCDC88B-206ENST00000473405 DICER1Q9UPY3 1922 aaKnown RBP24.86■■□□□ 1.57
CCDC88B-206ENST00000473405 PNNQ9H307 717 aaKnown RBP24.85■■□□□ 1.57
CCDC88B-206ENST00000473405 NFKBIEO00221 500 aa24.84■■□□□ 1.57
CCDC88B-206ENST00000473405 RGL2O15211 777 aa24.84■■□□□ 1.57
CCDC88B-206ENST00000473405 HSPA6P17066 643 aa24.84■■□□□ 1.57
CCDC88B-206ENST00000473405 EIF4A1P60842 406 aaKnown RBP24.84■■□□□ 1.57
CCDC88B-206ENST00000473405 ZNF652Q9Y2D9 606 aa24.84■■□□□ 1.57
CCDC88B-206ENST00000473405 MYBBP1AQ9BQG0 1328 aaKnown RBP24.84■■□□□ 1.57
CCDC88B-206ENST00000473405 ST5P78524 1137 aa24.83■■□□□ 1.57
CCDC88B-206ENST00000473405 ZNF622Q969S3 477 aaKnown RBP eCLIP24.83■■□□□ 1.57
CCDC88B-206ENST00000473405 LMNB1P20700 586 aa24.82■■□□□ 1.56
CCDC88B-206ENST00000473405 ZC3H4Q9UPT8 1303 aaKnown RBP24.82■■□□□ 1.56
CCDC88B-206ENST00000473405 TOMM70O94826 608 aa24.81■■□□□ 1.56
CCDC88B-206ENST00000473405 SRGNP10124 158 aa24.81■■□□□ 1.56
CCDC88B-206ENST00000473405 NBPF5PQ86XG9 351 aaPredicted RBP24.81■■□□□ 1.56
CCDC88B-206ENST00000473405 KDM2BQ8NHM5 1336 aa24.81■■□□□ 1.56
CCDC88B-206ENST00000473405 NPHP1O15259 732 aa24.8■■□□□ 1.56
CCDC88B-206ENST00000473405 HLFQ16534 295 aa24.8■■□□□ 1.56
CCDC88B-206ENST00000473405 STYK1Q6J9G0 422 aa24.79■■□□□ 1.56
CCDC88B-206ENST00000473405 NIP7Q9Y221 180 aaKnown RBP eCLIP24.79■■□□□ 1.56
CCDC88B-206ENST00000473405 C21orf2O43822 256 aa24.78■■□□□ 1.56
CCDC88B-206ENST00000473405 RIPK4P57078 832 aa24.78■■□□□ 1.56
CCDC88B-206ENST00000473405 TMPOP42166 694 aaKnown RBP24.77■■□□□ 1.56
CCDC88B-206ENST00000473405 PRPF40BQ6NWY9 871 aaKnown RBP24.77■■□□□ 1.56
CCDC88B-206ENST00000473405 PCNTO95613 3336 aa24.77■■□□□ 1.56
CCDC88B-206ENST00000473405 WDR90Q96KV7 1748 aa24.76■■□□□ 1.55
CCDC88B-206ENST00000473405 MASTLQ96GX5 879 aa24.76■■□□□ 1.55
CCDC88B-206ENST00000473405 ZNF219Q9P2Y4 722 aaPredicted RBP24.76■■□□□ 1.55
CCDC88B-206ENST00000473405 KLRG2A4D1S0 409 aaPredicted RBP24.75■■□□□ 1.55
CCDC88B-206ENST00000473405 NGEFQ8N5V2 710 aa24.75■■□□□ 1.55
CCDC88B-206ENST00000473405 CNKSR1Q969H4 720 aa24.75■■□□□ 1.55
CCDC88B-206ENST00000473405 TSPYL4Q9UJ04 414 aa24.75■■□□□ 1.55
CCDC88B-206ENST00000473405 TPTE2Q6XPS3 522 aa24.74■■□□□ 1.55
CCDC88B-206ENST00000473405 TTLL7Q6ZT98 887 aa24.74■■□□□ 1.55
CCDC88B-206ENST00000473405 RBM46Q8TBY0 533 aaKnown RBP24.74■■□□□ 1.55
CCDC88B-206ENST00000473405 RRP7AQ9Y3A4 280 aaKnown RBP24.74■■□□□ 1.55
CCDC88B-206ENST00000473405 MAP3K15Q6ZN16 1313 aa24.74■■□□□ 1.55
CCDC88B-206ENST00000473405 LTBP3Q9NS15 1303 aa24.74■■□□□ 1.55
CCDC88B-206ENST00000473405 ERVV-1B6SEH8 477 aa24.73■■□□□ 1.55
CCDC88B-206ENST00000473405 MYL6BP14649 208 aa24.73■■□□□ 1.55
CCDC88B-206ENST00000473405 CCDC146Q8IYE0 955 aa24.73■■□□□ 1.55
CCDC88B-206ENST00000473405 RRAGCQ9HB90 399 aa24.73■■□□□ 1.55
CCDC88B-206ENST00000473405 ANKRD36CQ5JPF3 1778 aa24.72■■□□□ 1.55
CCDC88B-206ENST00000473405 ABCC12Q96J65 1359 aa24.72■■□□□ 1.55
CCDC88B-206ENST00000473405 ERBB4Q15303 1308 aa24.72■■□□□ 1.55
CCDC88B-206ENST00000473405 FAM177BA6PVY3 158 aa24.72■■□□□ 1.55
CCDC88B-206ENST00000473405 LMOD3Q0VAK6 560 aa24.72■■□□□ 1.55
CCDC88B-206ENST00000473405 GLTPD2A6NH11 291 aa24.71■■□□□ 1.55
CCDC88B-206ENST00000473405 NPR1P16066 1061 aa24.71■■□□□ 1.55
CCDC88B-206ENST00000473405 KIF6Q6ZMV9 814 aa24.71■■□□□ 1.55
CCDC88B-206ENST00000473405 LRP10Q7Z4F1 713 aa24.71■■□□□ 1.55
CCDC88B-206ENST00000473405 C7orf43Q8WVR3 580 aa24.71■■□□□ 1.55
CCDC88B-206ENST00000473405 BABAM1Q9NWV8 329 aa24.71■■□□□ 1.55
CCDC88B-206ENST00000473405 UBN2Q6ZU65 1347 aa24.7■■□□□ 1.54
CCDC88B-206ENST00000473405 C16orf71Q8IYS4 520 aaPredicted RBP24.7■■□□□ 1.54
CCDC88B-206ENST00000473405 TAOK3Q9H2K8 898 aa24.7■■□□□ 1.54
CCDC88B-206ENST00000473405 IBTKQ9P2D0 1353 aaPredicted RBP24.69■■□□□ 1.54
CCDC88B-206ENST00000473405 PDIA6Q15084 440 aa24.69■■□□□ 1.54
CCDC88B-206ENST00000473405 ZBTB3Q9H5J0 574 aa24.69■■□□□ 1.54
CCDC88B-206ENST00000473405 RIC1Q4ADV7 1423 aa24.69■■□□□ 1.54
CCDC88B-206ENST00000473405 APLP1P51693 650 aa24.68■■□□□ 1.54
CCDC88B-206ENST00000473405 SOGA3Q5TF21 947 aa24.68■■□□□ 1.54
CCDC88B-206ENST00000473405 RUNDC1Q96C34 613 aa24.68■■□□□ 1.54
CCDC88B-206ENST00000473405 PRKRIP1Q9H875 184 aaPredicted RBP24.68■■□□□ 1.54
CCDC88B-206ENST00000473405 TRIM35Q9UPQ4 493 aa24.68■■□□□ 1.54
CCDC88B-206ENST00000473405 WDR43Q15061 677 aaKnown RBP eCLIP24.67■■□□□ 1.54
CCDC88B-206ENST00000473405 NEUROD2Q15784 382 aa24.67■■□□□ 1.54
CCDC88B-206ENST00000473405 PROSER3Q2NL68 480 aa24.67■■□□□ 1.54
CCDC88B-206ENST00000473405 NUTM1Q86Y26 1132 aa24.67■■□□□ 1.54
CCDC88B-206ENST00000473405 ADAMTS8Q9UP79 889 aa24.67■■□□□ 1.54
CCDC88B-206ENST00000473405 FSTL1Q12841 308 aa24.66■■□□□ 1.54
CCDC88B-206ENST00000473405 CRY2Q49AN0 593 aa24.66■■□□□ 1.54
CCDC88B-206ENST00000473405 ERFEQ4G0M1 354 aa24.66■■□□□ 1.54
CCDC88B-206ENST00000473405 NYXQ9GZU5 481 aa24.66■■□□□ 1.54
CCDC88B-206ENST00000473405 GPTP24298 496 aa24.65■■□□□ 1.54
CCDC88B-206ENST00000473405 ZNF34Q8IZ26 560 aa24.65■■□□□ 1.54
CCDC88B-206ENST00000473405 SNED1Q8TER0 1413 aa24.65■■□□□ 1.54
CCDC88B-206ENST00000473405 CHL1O00533 1208 aa24.64■■□□□ 1.54
CCDC88B-206ENST00000473405 EIF2S2P20042 333 aaKnown RBP24.64■■□□□ 1.54
CCDC88B-206ENST00000473405 GTF2E1P29083 439 aaPredicted RBP24.64■■□□□ 1.54
CCDC88B-206ENST00000473405 CCDC93Q567U6 631 aa24.64■■□□□ 1.54
CCDC88B-206ENST00000473405 OLFM4Q6UX06 510 aa24.64■■□□□ 1.54
CCDC88B-206ENST00000473405 GIGYF2Q6Y7W6 1299 aaKnown RBP24.64■■□□□ 1.54
CCDC88B-206ENST00000473405 LAMB2P55268 1798 aa24.64■■□□□ 1.53
CCDC88B-206ENST00000473405 POTECB2RU33 542 aa24.63■■□□□ 1.53
CCDC88B-206ENST00000473405 ANXA1P04083 346 aa24.63■■□□□ 1.53
CCDC88B-206ENST00000473405 VEGFAP15692 232 aaPredicted RBP24.63■■□□□ 1.53
CCDC88B-206ENST00000473405 SUSD4Q5VX71 490 aa24.63■■□□□ 1.53
CCDC88B-206ENST00000473405 NTSR2O95665 410 aa24.62■■□□□ 1.53
CCDC88B-206ENST00000473405 KRT24Q2M2I5 525 aa24.62■■□□□ 1.53
CCDC88B-206ENST00000473405 DNAJC5GQ8N7S2 189 aa24.61■■□□□ 1.53
CCDC88B-206ENST00000473405 SMC1BQ8NDV3 1235 aa24.6■■□□□ 1.53
CCDC88B-206ENST00000473405 ALDH1B1P30837 517 aa24.59■■□□□ 1.53
CCDC88B-206ENST00000473405 FKBP4Q02790 459 aaKnown RBP eCLIP24.59■■□□□ 1.53
CCDC88B-206ENST00000473405 DPY19L2Q6NUT2 758 aa24.59■■□□□ 1.53
CCDC88B-206ENST00000473405 NECTIN2Q92692 538 aa24.59■■□□□ 1.53
CCDC88B-206ENST00000473405 SCN4AP35499 1836 aa24.58■■□□□ 1.53
CCDC88B-206ENST00000473405 HOXA10P31260 410 aaPredicted RBP24.57■■□□□ 1.52
CCDC88B-206ENST00000473405 HTRA3P83110 453 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms