RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 WDR63Q8IWG1 891 aa17.07■□□□□ 0.32
TPM3-216ENST00000473036 AFDNP55196 1824 aaKnown RBP17.06■□□□□ 0.32
TPM3-216ENST00000473036 CALD1Q05682 793 aaKnown RBP17.06■□□□□ 0.32
TPM3-216ENST00000473036 DUSP27Q5VZP5 1158 aa17.06■□□□□ 0.32
TPM3-216ENST00000473036 TTLL7Q6ZT98 887 aa17.06■□□□□ 0.32
TPM3-216ENST00000473036 C10orf71Q711Q0 1435 aa17.05■□□□□ 0.32
TPM3-216ENST00000473036 ELL2O00472 640 aaPredicted RBP17.05■□□□□ 0.32
TPM3-216ENST00000473036 ZPR1O75312 459 aa17.05■□□□□ 0.32
TPM3-216ENST00000473036 MYL6BP14649 208 aa17.05■□□□□ 0.32
TPM3-216ENST00000473036 FANCIQ9NVI1 1328 aa17.04■□□□□ 0.32
TPM3-216ENST00000473036 A0A087WZG4 1122 aa17.04■□□□□ 0.32
TPM3-216ENST00000473036 NFIXQ14938 502 aa17.04■□□□□ 0.32
TPM3-216ENST00000473036 HLFQ16534 295 aa17.04■□□□□ 0.32
TPM3-216ENST00000473036 DZIP3Q86Y13 1208 aaKnown RBP17.04■□□□□ 0.32
TPM3-216ENST00000473036 NGEFQ8N5V2 710 aa17.04■□□□□ 0.32
TPM3-216ENST00000473036 KIAA1551Q9HCM1 1747 aa17.04■□□□□ 0.32
TPM3-216ENST00000473036 POLRMTO00411 1230 aaKnown RBP17.03■□□□□ 0.32
TPM3-216ENST00000473036 TBC1D9BQ66K14 1250 aa17.03■□□□□ 0.32
TPM3-216ENST00000473036 DNAJC5GQ8N7S2 189 aa17.03■□□□□ 0.32
TPM3-216ENST00000473036 NRXN2Q9P2S2 1712 aa17.03■□□□□ 0.32
TPM3-216ENST00000473036 NUP98P52948 1817 aa17.03■□□□□ 0.32
TPM3-216ENST00000473036 ERBB4Q15303 1308 aa17.02■□□□□ 0.32
TPM3-216ENST00000473036 HOXB7P09629 217 aa17.02■□□□□ 0.32
TPM3-216ENST00000473036 RBM46Q8TBY0 533 aaKnown RBP17.02■□□□□ 0.32
TPM3-216ENST00000473036 CHPF2Q9P2E5 772 aa17.02■□□□□ 0.32
TPM3-216ENST00000473036 HDGFL1Q5TGJ6 251 aa17.01■□□□□ 0.31
TPM3-216ENST00000473036 BCS1LQ9Y276 419 aa17.01■□□□□ 0.31
TPM3-216ENST00000473036 FSTL1Q12841 308 aa17■□□□□ 0.31
TPM3-216ENST00000473036 CDCA7LQ96GN5 454 aa17■□□□□ 0.31
TPM3-216ENST00000473036 DDX21Q9NR30 783 aaKnown RBP eCLIP17■□□□□ 0.31
TPM3-216ENST00000473036 PARP3Q9Y6F1 533 aa17■□□□□ 0.31
TPM3-216ENST00000473036 A0A0G2JLW4 131 aa16.99■□□□□ 0.31
TPM3-216ENST00000473036 EXOSC9Q06265 439 aaKnown RBP16.99■□□□□ 0.31
TPM3-216ENST00000473036 BICDL1Q6ZP65 573 aa16.99■□□□□ 0.31
TPM3-216ENST00000473036 ARHGAP27Q6ZUM4 889 aa16.99■□□□□ 0.31
TPM3-216ENST00000473036 WWC3Q9ULE0 1092 aa16.99■□□□□ 0.31
TPM3-216ENST00000473036 MAP3K15Q6ZN16 1313 aa16.98■□□□□ 0.31
TPM3-216ENST00000473036 N4BP2Q86UW6 1770 aaPredicted RBP16.98■□□□□ 0.31
TPM3-216ENST00000473036 COPS6Q7L5N1 327 aa16.98■□□□□ 0.31
TPM3-216ENST00000473036 XAGE3Q8WTP9 111 aa16.98■□□□□ 0.31
TPM3-216ENST00000473036 CARMIL3Q8ND23 1372 aa16.98■□□□□ 0.31
TPM3-216ENST00000473036 KDM2BQ8NHM5 1336 aa16.97■□□□□ 0.31
TPM3-216ENST00000473036 ANKRD31Q8N7Z5 1873 aa16.97■□□□□ 0.31
TPM3-216ENST00000473036 TCERG1O14776 1098 aaKnown RBP16.97■□□□□ 0.31
TPM3-216ENST00000473036 VAMP4O75379 141 aa16.97■□□□□ 0.31
TPM3-216ENST00000473036 TWISTNBQ3B726 338 aaPredicted RBP16.97■□□□□ 0.31
TPM3-216ENST00000473036 C16orf71Q8IYS4 520 aaPredicted RBP16.97■□□□□ 0.31
TPM3-216ENST00000473036 ZBTB3Q9H5J0 574 aa16.97■□□□□ 0.31
TPM3-216ENST00000473036 PIM2Q9P1W9 311 aa16.97■□□□□ 0.31
TPM3-216ENST00000473036 BRCA1P38398 1863 aaKnown RBP16.97■□□□□ 0.31
TPM3-216ENST00000473036 ERVV-1B6SEH8 477 aa16.96■□□□□ 0.31
TPM3-216ENST00000473036 SERPINB2P05120 415 aa16.96■□□□□ 0.31
TPM3-216ENST00000473036 DPEP1P16444 411 aa16.96■□□□□ 0.31
TPM3-216ENST00000473036 SLFN5Q08AF3 891 aa16.96■□□□□ 0.31
TPM3-216ENST00000473036 AIMP1Q12904 312 aaKnown RBP16.96■□□□□ 0.31
TPM3-216ENST00000473036 CLEC4GQ6UXB4 293 aa16.96■□□□□ 0.31
TPM3-216ENST00000473036 TRMT2AQ8IZ69 625 aaKnown RBP16.96■□□□□ 0.31
TPM3-216ENST00000473036 PHAXQ9H814 394 aaKnown RBP16.96■□□□□ 0.31
TPM3-216ENST00000473036 ARFGEF1Q9Y6D6 1849 aa16.96■□□□□ 0.3
TPM3-216ENST00000473036 ZC3H4Q9UPT8 1303 aaKnown RBP16.96■□□□□ 0.3
TPM3-216ENST00000473036 GOLGA2Q08379 1002 aa16.95■□□□□ 0.3
TPM3-216ENST00000473036 CCDC24Q8N4L8 307 aa16.95■□□□□ 0.3
TPM3-216ENST00000473036 JMYQ8N9B5 988 aa16.95■□□□□ 0.3
TPM3-216ENST00000473036 DBF4Q9UBU7 674 aaPredicted RBP16.95■□□□□ 0.3
TPM3-216ENST00000473036 UBN2Q6ZU65 1347 aa16.95■□□□□ 0.3
TPM3-216ENST00000473036 RGL2O15211 777 aa16.94■□□□□ 0.3
TPM3-216ENST00000473036 KCNA3P22001 575 aa16.94■□□□□ 0.3
TPM3-216ENST00000473036 C9orf131Q5VYM1 1079 aa16.94■□□□□ 0.3
TPM3-216ENST00000473036 G2E3Q7L622 706 aa16.94■□□□□ 0.3
TPM3-216ENST00000473036 NPM2Q86SE8 214 aaKnown RBP16.94■□□□□ 0.3
TPM3-216ENST00000473036 NMRK2Q9NPI5 230 aa16.94■□□□□ 0.3
TPM3-216ENST00000473036 ANKRD36CQ5JPF3 1778 aa16.94■□□□□ 0.3
TPM3-216ENST00000473036 WDR90Q96KV7 1748 aa16.93■□□□□ 0.3
TPM3-216ENST00000473036 ARFGEF2Q9Y6D5 1785 aa16.93■□□□□ 0.3
TPM3-216ENST00000473036 DALRD3Q5D0E6 543 aaKnown RBP16.93■□□□□ 0.3
TPM3-216ENST00000473036 PRR5LQ6MZQ0 368 aa16.93■□□□□ 0.3
TPM3-216ENST00000473036 GIGYF2Q6Y7W6 1299 aaKnown RBP16.93■□□□□ 0.3
TPM3-216ENST00000473036 KIF6Q6ZMV9 814 aa16.93■□□□□ 0.3
TPM3-216ENST00000473036 ZNF34Q8IZ26 560 aa16.93■□□□□ 0.3
TPM3-216ENST00000473036 KLRG1Q96E93 195 aa16.93■□□□□ 0.3
TPM3-216ENST00000473036 MYH16Q9H6N6 1097 aa16.93■□□□□ 0.3
TPM3-216ENST00000473036 NIP7Q9Y221 180 aaKnown RBP eCLIP16.93■□□□□ 0.3
TPM3-216ENST00000473036 GPTP24298 496 aa16.92■□□□□ 0.3
TPM3-216ENST00000473036 SETDB2Q96T68 719 aa16.92■□□□□ 0.3
TPM3-216ENST00000473036 HYPKQ9NX55 129 aa16.92■□□□□ 0.3
TPM3-216ENST00000473036 COL11A2P13942 1736 aaPredicted RBP16.91■□□□□ 0.3
TPM3-216ENST00000473036 E9PSI1 815 aa16.91■□□□□ 0.3
TPM3-216ENST00000473036 CCDC30Q5VVM6 783 aa16.91■□□□□ 0.3
TPM3-216ENST00000473036 ZNF652Q9Y2D9 606 aa16.91■□□□□ 0.3
TPM3-216ENST00000473036 CACNA1FO60840 1977 aa16.9■□□□□ 0.3
TPM3-216ENST00000473036 CHRNA5P30532 468 aa16.9■□□□□ 0.3
TPM3-216ENST00000473036 HNRNPUQ00839 825 aaKnown RBP eCLIP16.9■□□□□ 0.3
TPM3-216ENST00000473036 TNRC6CQ9HCJ0 1690 aaKnown RBP16.9■□□□□ 0.3
TPM3-216ENST00000473036 FAM177BA6PVY3 158 aa16.89■□□□□ 0.29
TPM3-216ENST00000473036 SUSD4Q5VX71 490 aa16.89■□□□□ 0.29
TPM3-216ENST00000473036 ANKRD13DQ6ZTN6 518 aa16.89■□□□□ 0.29
TPM3-216ENST00000473036 ZNF428Q96B54 188 aa16.89■□□□□ 0.29
TPM3-216ENST00000473036 DLEC1Q9Y238 1755 aa16.89■□□□□ 0.29
TPM3-216ENST00000473036 SLC4A2P04920 1241 aa16.88■□□□□ 0.29
TPM3-216ENST00000473036 SMC1BQ8NDV3 1235 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms