RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PRR5LQ6MZQ0 368 aa20.74■□□□□ 0.91
CCDC88B-205ENST00000472524 ZC3H4Q9UPT8 1303 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-205ENST00000472524 BRIP1Q9BX63 1249 aa20.73■□□□□ 0.91
CCDC88B-205ENST00000472524 ZNF622Q969S3 477 aaKnown RBP eCLIP20.72■□□□□ 0.91
CCDC88B-205ENST00000472524 NBPF26B4DH59 902 aa20.71■□□□□ 0.91
CCDC88B-205ENST00000472524 RIPK4P57078 832 aa20.71■□□□□ 0.91
CCDC88B-205ENST00000472524 NBPF10Q6P3W6 841 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-205ENST00000472524 NBPF15Q8N660 670 aa20.71■□□□□ 0.91
CCDC88B-205ENST00000472524 SETDB2Q96T68 719 aa20.71■□□□□ 0.91
CCDC88B-205ENST00000472524 ZNF219Q9P2Y4 722 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-205ENST00000472524 NUP98P52948 1817 aa20.71■□□□□ 0.91
CCDC88B-205ENST00000472524 GLTPD2A6NH11 291 aa20.7■□□□□ 0.9
CCDC88B-205ENST00000472524 NPHP1O15259 732 aa20.7■□□□□ 0.9
CCDC88B-205ENST00000472524 C21orf2O43822 256 aa20.7■□□□□ 0.9
CCDC88B-205ENST00000472524 PDE6BP35913 854 aa20.7■□□□□ 0.9
CCDC88B-205ENST00000472524 CCDC146Q8IYE0 955 aa20.7■□□□□ 0.9
CCDC88B-205ENST00000472524 TMPOP42166 694 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-205ENST00000472524 EIF4A1P60842 406 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-205ENST00000472524 WDR43Q15061 677 aaKnown RBP eCLIP20.69■□□□□ 0.9
CCDC88B-205ENST00000472524 CNBD1Q8NA66 436 aa20.69■□□□□ 0.9
CCDC88B-205ENST00000472524 SMC1BQ8NDV3 1235 aa20.69■□□□□ 0.9
CCDC88B-205ENST00000472524 KLRG1Q96E93 195 aa20.68■□□□□ 0.9
CCDC88B-205ENST00000472524 TSPYL4Q9UJ04 414 aa20.68■□□□□ 0.9
CCDC88B-205ENST00000472524 PDZRN3Q9UPQ7 1066 aa20.68■□□□□ 0.9
CCDC88B-205ENST00000472524 ZNF652Q9Y2D9 606 aa20.68■□□□□ 0.9
CCDC88B-205ENST00000472524 RRP7AQ9Y3A4 280 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-205ENST00000472524 VEGFAP15692 232 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-205ENST00000472524 NGEFQ8N5V2 710 aa20.67■□□□□ 0.9
CCDC88B-205ENST00000472524 PRKRIP1Q9H875 184 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-205ENST00000472524 TNRC6CQ9HCJ0 1690 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-205ENST00000472524 ST5P78524 1137 aa20.66■□□□□ 0.9
CCDC88B-205ENST00000472524 LMOD3Q0VAK6 560 aa20.66■□□□□ 0.9
CCDC88B-205ENST00000472524 NEUROD2Q15784 382 aa20.66■□□□□ 0.9
CCDC88B-205ENST00000472524 WDR90Q96KV7 1748 aa20.66■□□□□ 0.9
CCDC88B-205ENST00000472524 ARFGEF2Q9Y6D5 1785 aa20.65■□□□□ 0.9
CCDC88B-205ENST00000472524 CLEC4GQ6UXB4 293 aa20.65■□□□□ 0.9
CCDC88B-205ENST00000472524 POTECB2RU33 542 aa20.64■□□□□ 0.89
CCDC88B-205ENST00000472524 SRGNP10124 158 aa20.64■□□□□ 0.89
CCDC88B-205ENST00000472524 ERFEQ4G0M1 354 aa20.64■□□□□ 0.89
CCDC88B-205ENST00000472524 PRPF40BQ6NWY9 871 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-205ENST00000472524 NBPF5PQ86XG9 351 aaPredicted RBP20.64■□□□□ 0.89
CCDC88B-205ENST00000472524 SLX4Q8IY92 1834 aa20.64■□□□□ 0.89
CCDC88B-205ENST00000472524 MYL6BP14649 208 aa20.63■□□□□ 0.89
CCDC88B-205ENST00000472524 STYK1Q6J9G0 422 aa20.63■□□□□ 0.89
CCDC88B-205ENST00000472524 JMYQ8N9B5 988 aa20.63■□□□□ 0.89
CCDC88B-205ENST00000472524 RUNDC1Q96C34 613 aa20.63■□□□□ 0.89
CCDC88B-205ENST00000472524 NIP7Q9Y221 180 aaKnown RBP eCLIP20.63■□□□□ 0.89
CCDC88B-205ENST00000472524 FER1L6Q2WGJ9 1857 aa20.62■□□□□ 0.89
CCDC88B-205ENST00000472524 TIAM2Q8IVF5 1701 aa20.62■□□□□ 0.89
CCDC88B-205ENST00000472524 FAM177BA6PVY3 158 aa20.62■□□□□ 0.89
CCDC88B-205ENST00000472524 HLFQ16534 295 aa20.62■□□□□ 0.89
CCDC88B-205ENST00000472524 CNKSR1Q969H4 720 aa20.62■□□□□ 0.89
CCDC88B-205ENST00000472524 TAOK3Q9H2K8 898 aa20.62■□□□□ 0.89
CCDC88B-205ENST00000472524 ADAMTS8Q9UP79 889 aa20.62■□□□□ 0.89
CCDC88B-205ENST00000472524 DPY19L2Q6NUT2 758 aa20.61■□□□□ 0.89
CCDC88B-205ENST00000472524 MASTLQ96GX5 879 aa20.61■□□□□ 0.89
CCDC88B-205ENST00000472524 DICER1Q9UPY3 1922 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-205ENST00000472524 LTBP3Q9NS15 1303 aa20.6■□□□□ 0.89
CCDC88B-205ENST00000472524 ZEB1P37275 1124 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-205ENST00000472524 KIF6Q6ZMV9 814 aa20.6■□□□□ 0.89
CCDC88B-205ENST00000472524 TTLL7Q6ZT98 887 aa20.6■□□□□ 0.89
CCDC88B-205ENST00000472524 MAP3K15Q6ZN16 1313 aa20.59■□□□□ 0.89
CCDC88B-205ENST00000472524 RGL2O15211 777 aa20.59■□□□□ 0.89
CCDC88B-205ENST00000472524 EIF2S2P20042 333 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-205ENST00000472524 LAS1LQ9Y4W2 734 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-205ENST00000472524 BABAM1Q9NWV8 329 aa20.58■□□□□ 0.89
CCDC88B-205ENST00000472524 TRIM35Q9UPQ4 493 aa20.58■□□□□ 0.89
CCDC88B-205ENST00000472524 ERBB4Q15303 1308 aa20.57■□□□□ 0.88
CCDC88B-205ENST00000472524 DDNO94850 711 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-205ENST00000472524 TPTE2Q6XPS3 522 aa20.57■□□□□ 0.88
CCDC88B-205ENST00000472524 C7orf43Q8WVR3 580 aa20.57■□□□□ 0.88
CCDC88B-205ENST00000472524 ZBTB3Q9H5J0 574 aa20.57■□□□□ 0.88
CCDC88B-205ENST00000472524 ERVV-1B6SEH8 477 aa20.56■□□□□ 0.88
CCDC88B-205ENST00000472524 SOGA3Q5TF21 947 aa20.56■□□□□ 0.88
CCDC88B-205ENST00000472524 ANKRD36CQ5JPF3 1778 aa20.56■□□□□ 0.88
CCDC88B-205ENST00000472524 PCNTO95613 3336 aa20.56■□□□□ 0.88
CCDC88B-205ENST00000472524 KLRG2A4D1S0 409 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-205ENST00000472524 NPR1P16066 1061 aa20.55■□□□□ 0.88
CCDC88B-205ENST00000472524 GTF2E1P29083 439 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-205ENST00000472524 NECTIN2Q92692 538 aa20.55■□□□□ 0.88
CCDC88B-205ENST00000472524 ANXA1P04083 346 aa20.54■□□□□ 0.88
CCDC88B-205ENST00000472524 GPTP24298 496 aa20.54■□□□□ 0.88
CCDC88B-205ENST00000472524 KRT24Q2M2I5 525 aa20.54■□□□□ 0.88
CCDC88B-205ENST00000472524 CCDC93Q567U6 631 aa20.54■□□□□ 0.88
CCDC88B-205ENST00000472524 COL13A1Q5TAT6 717 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-205ENST00000472524 OLFM4Q6UX06 510 aa20.54■□□□□ 0.88
CCDC88B-205ENST00000472524 CHL1O00533 1208 aa20.53■□□□□ 0.88
CCDC88B-205ENST00000472524 POTEIP0CG38 1075 aa20.53■□□□□ 0.88
CCDC88B-205ENST00000472524 POTEJP0CG39 1038 aa20.53■□□□□ 0.88
CCDC88B-205ENST00000472524 PROSER3Q2NL68 480 aa20.53■□□□□ 0.88
CCDC88B-205ENST00000472524 ABCC12Q96J65 1359 aa20.52■□□□□ 0.88
CCDC88B-205ENST00000472524 PDIA6Q15084 440 aa20.52■□□□□ 0.88
CCDC88B-205ENST00000472524 NUTM1Q86Y26 1132 aa20.52■□□□□ 0.88
CCDC88B-205ENST00000472524 NYXQ9GZU5 481 aa20.52■□□□□ 0.88
CCDC88B-205ENST00000472524 ZNF277Q9NRM2 450 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-205ENST00000472524 UBN2Q6ZU65 1347 aa20.52■□□□□ 0.87
CCDC88B-205ENST00000472524 LRP10Q7Z4F1 713 aa20.51■□□□□ 0.87
CCDC88B-205ENST00000472524 APAF1O14727 1248 aa20.5■□□□□ 0.87
CCDC88B-205ENST00000472524 FKBP4Q02790 459 aaKnown RBP eCLIP20.5■□□□□ 0.87
CCDC88B-205ENST00000472524 CHADLQ6NUI6 762 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms