RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 PTCH1Q13635 1447 aa16.61■□□□□ 0.25
CCDC88A-211ENST00000471947 TMOD3Q9NYL9 352 aa16.6■□□□□ 0.25
CCDC88A-211ENST00000471947 RIMS1Q86UR5 1692 aaKnown RBP16.6■□□□□ 0.25
CCDC88A-211ENST00000471947 HELBQ8NG08 1087 aaPredicted RBP16.6■□□□□ 0.25
CCDC88A-211ENST00000471947 TMX3Q96JJ7 454 aa16.6■□□□□ 0.25
CCDC88A-211ENST00000471947 DIP2AQ14689 1571 aa16.6■□□□□ 0.25
CCDC88A-211ENST00000471947 TECPR2O15040 1411 aa16.6■□□□□ 0.25
CCDC88A-211ENST00000471947 BRPF1P55201 1214 aaPredicted RBP16.6■□□□□ 0.25
CCDC88A-211ENST00000471947 TOMM22Q9NS69 142 aa16.6■□□□□ 0.25
CCDC88A-211ENST00000471947 DDX11L8A8MPP1 907 aa16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 SMIM5Q71RC9 77 aa16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 SYNE4Q8N205 404 aa16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 FBXW7Q969H0 707 aa16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 DDX21Q9NR30 783 aaKnown RBP eCLIP16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 RBM25P49756 843 aaKnown RBP16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 TFCP2Q12800 502 aa16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 CCDC24Q8N4L8 307 aa16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 HSP90AB4PQ58FF6 505 aa16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 ANTXR1Q9H6X2 564 aa16.59■□□□□ 0.25
CCDC88A-211ENST00000471947 GTF2E1P29083 439 aaPredicted RBP16.58■□□□□ 0.25
CCDC88A-211ENST00000471947 EAF2Q96CJ1 260 aaPredicted RBP16.58■□□□□ 0.25
CCDC88A-211ENST00000471947 KIF2CQ99661 725 aa16.58■□□□□ 0.25
CCDC88A-211ENST00000471947 APPP05067 770 aa16.58■□□□□ 0.24
CCDC88A-211ENST00000471947 BRINP3Q76B58 766 aa16.58■□□□□ 0.24
CCDC88A-211ENST00000471947 CHST3Q7LGC8 479 aa16.58■□□□□ 0.24
CCDC88A-211ENST00000471947 LINS1Q8NG48 757 aa16.58■□□□□ 0.24
CCDC88A-211ENST00000471947 DDX11Q96FC9 970 aa16.58■□□□□ 0.24
CCDC88A-211ENST00000471947 ECHDC1Q9NTX5 307 aa16.58■□□□□ 0.24
CCDC88A-211ENST00000471947 GOLIM4O00461 696 aa16.58■□□□□ 0.24
CCDC88A-211ENST00000471947 ASAP1Q9ULH1 1129 aa16.58■□□□□ 0.24
CCDC88A-211ENST00000471947 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.58■□□□□ 0.24
CCDC88A-211ENST00000471947 IQSEC3Q9UPP2 1182 aaPredicted RBP16.57■□□□□ 0.24
CCDC88A-211ENST00000471947 ZKSCAN1P17029 563 aaPredicted RBP16.57■□□□□ 0.24
CCDC88A-211ENST00000471947 SEC62Q99442 399 aaKnown RBP16.57■□□□□ 0.24
CCDC88A-211ENST00000471947 DNAJC10Q8IXB1 793 aa16.57■□□□□ 0.24
CCDC88A-211ENST00000471947 CHMP4AQ9BY43 222 aa16.57■□□□□ 0.24
CCDC88A-211ENST00000471947 DBNDD2Q9BQY9 259 aa16.56■□□□□ 0.24
CCDC88A-211ENST00000471947 SMC3Q9UQE7 1217 aa16.56■□□□□ 0.24
CCDC88A-211ENST00000471947 KIF13AQ9H1H9 1805 aa16.56■□□□□ 0.24
CCDC88A-211ENST00000471947 GLRX3O76003 335 aaKnown RBP16.56■□□□□ 0.24
CCDC88A-211ENST00000471947 PTMAP06454 111 aaKnown RBP16.56■□□□□ 0.24
CCDC88A-211ENST00000471947 HAND2P61296 217 aa16.56■□□□□ 0.24
CCDC88A-211ENST00000471947 BAG4O95429 457 aaKnown RBP16.55■□□□□ 0.24
CCDC88A-211ENST00000471947 PTH1RQ03431 593 aa16.55■□□□□ 0.24
CCDC88A-211ENST00000471947 FAM173BQ6P4H8 233 aa16.55■□□□□ 0.24
CCDC88A-211ENST00000471947 RASEFQ8IZ41 740 aa16.55■□□□□ 0.24
CCDC88A-211ENST00000471947 NMIQ13287 307 aaPredicted RBP16.55■□□□□ 0.24
CCDC88A-211ENST00000471947 RUFY2Q8WXA3 655 aa16.55■□□□□ 0.24
CCDC88A-211ENST00000471947 NRXN3Q9Y4C0 1643 aa16.54■□□□□ 0.24
CCDC88A-211ENST00000471947 IGKV5-2P06315 115 aa16.54■□□□□ 0.24
CCDC88A-211ENST00000471947 SSH3Q8TE77 659 aa16.54■□□□□ 0.24
CCDC88A-211ENST00000471947 DCAF5Q96JK2 942 aa16.54■□□□□ 0.24
CCDC88A-211ENST00000471947 ARID3AQ99856 593 aa16.54■□□□□ 0.24
CCDC88A-211ENST00000471947 IL2RBP14784 551 aa16.54■□□□□ 0.24
CCDC88A-211ENST00000471947 L1TD1Q5T7N2 865 aaKnown RBP16.54■□□□□ 0.24
CCDC88A-211ENST00000471947 GCKRQ14397 625 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 NAP1L5Q96NT1 182 aaPredicted RBP16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 CNNM1Q9NRU3 951 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 ADGRL3Q9HAR2 1447 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 ADGRB2O60241 1585 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 RGPD8O14715 1765 aaPredicted RBP16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 KDRP35968 1356 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 NEURL1BA8MQ27 555 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 SNAP23O00161 211 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 GUCY1B3Q02153 619 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 CCDC57Q2TAC2 916 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 ATP10DQ9P241 1426 aa16.53■□□□□ 0.24
CCDC88A-211ENST00000471947 KIF20BQ96Q89 1820 aa16.52■□□□□ 0.24
CCDC88A-211ENST00000471947 RAB11FIP3O75154 756 aa16.52■□□□□ 0.24
CCDC88A-211ENST00000471947 GOLGA6L4A6NEF3 574 aa16.52■□□□□ 0.23
CCDC88A-211ENST00000471947 PUS3Q9BZE2 481 aaKnown RBP16.52■□□□□ 0.23
CCDC88A-211ENST00000471947 HDAC5Q9UQL6 1122 aa16.52■□□□□ 0.23
CCDC88A-211ENST00000471947 SYCE3A1L190 88 aa16.51■□□□□ 0.23
CCDC88A-211ENST00000471947 NUCB2P80303 420 aa16.51■□□□□ 0.23
CCDC88A-211ENST00000471947 BCL11BQ9C0K0 894 aaPredicted RBP16.51■□□□□ 0.23
CCDC88A-211ENST00000471947 PDRG1Q9NUG6 133 aa16.51■□□□□ 0.23
CCDC88A-211ENST00000471947 XRCC6P12956 609 aaKnown RBP eCLIP16.51■□□□□ 0.23
CCDC88A-211ENST00000471947 ADCK5Q3MIX3 580 aa16.51■□□□□ 0.23
CCDC88A-211ENST00000471947 UBR1Q8IWV7 1749 aa16.51■□□□□ 0.23
CCDC88A-211ENST00000471947 PRIM1P49642 420 aaKnown RBP16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 LRRC24Q50LG9 513 aa16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 IBTKQ9P2D0 1353 aaPredicted RBP16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 SASH1O94885 1247 aa16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 SLC4A8Q2Y0W8 1093 aa16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 KIF6Q6ZMV9 814 aa16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 ADCY9O60503 1353 aa16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 PXDNQ92626 1479 aa16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 AK2P54819 239 aa16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 TRMT112Q9UI30 125 aaKnown RBP16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 RBM8AQ9Y5S9 174 aaKnown RBP16.5■□□□□ 0.23
CCDC88A-211ENST00000471947 TFIP11Q9UBB9 837 aaKnown RBP16.49■□□□□ 0.23
CCDC88A-211ENST00000471947 IDH1O75874 414 aaKnown RBP16.49■□□□□ 0.23
CCDC88A-211ENST00000471947 CCT2P78371 535 aaKnown RBP16.49■□□□□ 0.23
CCDC88A-211ENST00000471947 CEP126Q9P2H0 1117 aa16.49■□□□□ 0.23
CCDC88A-211ENST00000471947 CYP46A1Q9Y6A2 500 aa16.49■□□□□ 0.23
CCDC88A-211ENST00000471947 RGS12O14924 1447 aa16.49■□□□□ 0.23
CCDC88A-211ENST00000471947 A0A0D9SFI3 127 aa16.48■□□□□ 0.23
CCDC88A-211ENST00000471947 EXOC5O00471 708 aa16.48■□□□□ 0.23
CCDC88A-211ENST00000471947 ERC1Q8IUD2 1116 aa16.48■□□□□ 0.23
CCDC88A-211ENST00000471947 METTL22Q9BUU2 404 aaPredicted RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms