RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CHPF2Q9P2E5 772 aa19.75■□□□□ 0.75
SDC3-203ENST00000471567 BCORQ6W2J9 1755 aa19.75■□□□□ 0.75
SDC3-203ENST00000471567 TTLL7Q6ZT98 887 aa19.74■□□□□ 0.75
SDC3-203ENST00000471567 TSPYL6Q8N831 410 aa19.74■□□□□ 0.75
SDC3-203ENST00000471567 SETDB2Q96T68 719 aa19.74■□□□□ 0.75
SDC3-203ENST00000471567 SPINK5Q9NQ38 1064 aaPredicted RBP19.74■□□□□ 0.75
SDC3-203ENST00000471567 HYPKQ9NX55 129 aa19.74■□□□□ 0.75
SDC3-203ENST00000471567 ANXA1P04083 346 aa19.73■□□□□ 0.75
SDC3-203ENST00000471567 SERPINB2P05120 415 aa19.73■□□□□ 0.75
SDC3-203ENST00000471567 TWISTNBQ3B726 338 aaPredicted RBP19.73■□□□□ 0.75
SDC3-203ENST00000471567 CCDC30Q5VVM6 783 aa19.73■□□□□ 0.75
SDC3-203ENST00000471567 BICDL1Q6ZP65 573 aa19.73■□□□□ 0.75
SDC3-203ENST00000471567 CARMIL3Q8ND23 1372 aa19.72■□□□□ 0.75
SDC3-203ENST00000471567 HLFQ16534 295 aa19.72■□□□□ 0.75
SDC3-203ENST00000471567 C10orf71Q711Q0 1435 aa19.72■□□□□ 0.75
SDC3-203ENST00000471567 COPS6Q7L5N1 327 aa19.72■□□□□ 0.75
SDC3-203ENST00000471567 XAGE3Q8WTP9 111 aa19.72■□□□□ 0.75
SDC3-203ENST00000471567 E9PSI1 815 aa19.71■□□□□ 0.75
SDC3-203ENST00000471567 TGFB2P61812 414 aa19.71■□□□□ 0.75
SDC3-203ENST00000471567 GIGYF2Q6Y7W6 1299 aaKnown RBP19.71■□□□□ 0.75
SDC3-203ENST00000471567 NLGN2Q8NFZ4 835 aa19.71■□□□□ 0.75
SDC3-203ENST00000471567 DCAF8L1A6NGE4 600 aa19.7■□□□□ 0.74
SDC3-203ENST00000471567 EXOSC9Q06265 439 aaKnown RBP19.7■□□□□ 0.74
SDC3-203ENST00000471567 ZBTB3Q9H5J0 574 aa19.7■□□□□ 0.74
SDC3-203ENST00000471567 KIF13BQ9NQT8 1826 aa19.69■□□□□ 0.74
SDC3-203ENST00000471567 NRXN2Q9P2S2 1712 aa19.69■□□□□ 0.74
SDC3-203ENST00000471567 VAMP4O75379 141 aa19.69■□□□□ 0.74
SDC3-203ENST00000471567 AIMP1Q12904 312 aaKnown RBP19.69■□□□□ 0.74
SDC3-203ENST00000471567 NIP7Q9Y221 180 aaKnown RBP eCLIP19.69■□□□□ 0.74
SDC3-203ENST00000471567 ATP10DQ9P241 1426 aa19.68■□□□□ 0.74
SDC3-203ENST00000471567 SLFN5Q08AF3 891 aa19.68■□□□□ 0.74
SDC3-203ENST00000471567 STK31Q9BXU1 1019 aa19.68■□□□□ 0.74
SDC3-203ENST00000471567 HSP90AB3PQ58FF7 597 aa19.67■□□□□ 0.74
SDC3-203ENST00000471567 PLBD2Q8NHP8 589 aa19.67■□□□□ 0.74
SDC3-203ENST00000471567 AFDNP55196 1824 aaKnown RBP19.67■□□□□ 0.74
SDC3-203ENST00000471567 PRR5LQ6MZQ0 368 aa19.66■□□□□ 0.74
SDC3-203ENST00000471567 ANKRD13DQ6ZTN6 518 aa19.66■□□□□ 0.74
SDC3-203ENST00000471567 NBPF5PQ86XG9 351 aaPredicted RBP19.66■□□□□ 0.74
SDC3-203ENST00000471567 ZNF34Q8IZ26 560 aa19.66■□□□□ 0.74
SDC3-203ENST00000471567 NUP98P52948 1817 aa19.66■□□□□ 0.74
SDC3-203ENST00000471567 TPTE2Q6XPS3 522 aa19.65■□□□□ 0.74
SDC3-203ENST00000471567 CNBD1Q8NA66 436 aa19.65■□□□□ 0.74
SDC3-203ENST00000471567 PHAXQ9H814 394 aaKnown RBP19.65■□□□□ 0.74
SDC3-203ENST00000471567 PXDNLA1KZ92 1463 aa19.65■□□□□ 0.74
SDC3-203ENST00000471567 NPHP1O15259 732 aa19.64■□□□□ 0.73
SDC3-203ENST00000471567 ST5P78524 1137 aa19.64■□□□□ 0.73
SDC3-203ENST00000471567 TCIRG1Q13488 830 aa19.64■□□□□ 0.73
SDC3-203ENST00000471567 PARP10Q53GL7 1025 aa19.64■□□□□ 0.73
SDC3-203ENST00000471567 TRMT2AQ8IZ69 625 aaKnown RBP19.64■□□□□ 0.73
SDC3-203ENST00000471567 BRIP1Q9BX63 1249 aa19.64■□□□□ 0.73
SDC3-203ENST00000471567 NYXQ9GZU5 481 aa19.64■□□□□ 0.73
SDC3-203ENST00000471567 PDZRN3Q9UPQ7 1066 aa19.64■□□□□ 0.73
SDC3-203ENST00000471567 IBTKQ9P2D0 1353 aaPredicted RBP19.63■□□□□ 0.73
SDC3-203ENST00000471567 A0A0G2JLW4 131 aa19.63■□□□□ 0.73
SDC3-203ENST00000471567 SLC4A2P04920 1241 aa19.63■□□□□ 0.73
SDC3-203ENST00000471567 DPEP1P16444 411 aa19.63■□□□□ 0.73
SDC3-203ENST00000471567 CDCA7LQ96GN5 454 aa19.63■□□□□ 0.73
SDC3-203ENST00000471567 DDX58O95786 925 aaKnown RBP19.62■□□□□ 0.73
SDC3-203ENST00000471567 GPTP24298 496 aa19.62■□□□□ 0.73
SDC3-203ENST00000471567 PDE6BP35913 854 aa19.62■□□□□ 0.73
SDC3-203ENST00000471567 HNRNPUQ00839 825 aaKnown RBP eCLIP19.62■□□□□ 0.73
SDC3-203ENST00000471567 GPR162Q16538 588 aa19.62■□□□□ 0.73
SDC3-203ENST00000471567 UBN2Q6ZU65 1347 aa19.61■□□□□ 0.73
SDC3-203ENST00000471567 TCERG1O14776 1098 aaKnown RBP19.61■□□□□ 0.73
SDC3-203ENST00000471567 PPP1R42Q7Z4L9 355 aa19.61■□□□□ 0.73
SDC3-203ENST00000471567 RIC3Q7Z5B4 369 aa19.61■□□□□ 0.73
SDC3-203ENST00000471567 KIAA1551Q9HCM1 1747 aa19.61■□□□□ 0.73
SDC3-203ENST00000471567 KCNA3P22001 575 aa19.6■□□□□ 0.73
SDC3-203ENST00000471567 GTF2E1P29083 439 aaPredicted RBP19.6■□□□□ 0.73
SDC3-203ENST00000471567 SUSD4Q5VX71 490 aa19.6■□□□□ 0.73
SDC3-203ENST00000471567 FAM177BA6PVY3 158 aa19.59■□□□□ 0.73
SDC3-203ENST00000471567 H0YIN7 160 aa19.59■□□□□ 0.73
SDC3-203ENST00000471567 CHRNA5P30532 468 aa19.59■□□□□ 0.73
SDC3-203ENST00000471567 TRIM28Q13263 835 aaKnown RBP19.59■□□□□ 0.73
SDC3-203ENST00000471567 PELP1Q8IZL8 1130 aaKnown RBP19.59■□□□□ 0.73
SDC3-203ENST00000471567 ZNF428Q96B54 188 aa19.59■□□□□ 0.73
SDC3-203ENST00000471567 ISCA1Q9BUE6 129 aa19.59■□□□□ 0.73
SDC3-203ENST00000471567 PIM2Q9P1W9 311 aa19.59■□□□□ 0.73
SDC3-203ENST00000471567 CACNA1FO60840 1977 aa19.59■□□□□ 0.73
SDC3-203ENST00000471567 RNF123Q5XPI4 1314 aa19.58■□□□□ 0.73
SDC3-203ENST00000471567 N4BP2Q86UW6 1770 aaPredicted RBP19.58■□□□□ 0.73
SDC3-203ENST00000471567 GRIN3BO60391 1043 aa19.58■□□□□ 0.72
SDC3-203ENST00000471567 NTSR2O95665 410 aa19.58■□□□□ 0.72
SDC3-203ENST00000471567 KSR2Q6VAB6 950 aa19.58■□□□□ 0.72
SDC3-203ENST00000471567 NLRP10Q86W26 655 aa19.58■□□□□ 0.72
SDC3-203ENST00000471567 C2CD5Q86YS7 1000 aa19.58■□□□□ 0.72
SDC3-203ENST00000471567 CCDC24Q8N4L8 307 aa19.58■□□□□ 0.72
SDC3-203ENST00000471567 UTP14AQ9BVJ6 771 aaKnown RBP19.58■□□□□ 0.72
SDC3-203ENST00000471567 CT47B1P0C2W7 299 aaPredicted RBP19.57■□□□□ 0.72
SDC3-203ENST00000471567 YBX3P16989 372 aaKnown RBP eCLIP19.57■□□□□ 0.72
SDC3-203ENST00000471567 FLIIQ13045 1269 aa19.57■□□□□ 0.72
SDC3-203ENST00000471567 G2E3Q7L622 706 aa19.57■□□□□ 0.72
SDC3-203ENST00000471567 ANKRD36CQ5JPF3 1778 aa19.57■□□□□ 0.72
SDC3-203ENST00000471567 KLRG2A4D1S0 409 aaPredicted RBP19.56■□□□□ 0.72
SDC3-203ENST00000471567 METTL22Q9BUU2 404 aaPredicted RBP19.56■□□□□ 0.72
SDC3-203ENST00000471567 ANKRD31Q8N7Z5 1873 aa19.56■□□□□ 0.72
SDC3-203ENST00000471567 PI4KAP2A4QPH2 592 aa19.55■□□□□ 0.72
SDC3-203ENST00000471567 RIC1Q4ADV7 1423 aa19.55■□□□□ 0.72
SDC3-203ENST00000471567 ERFEQ4G0M1 354 aa19.55■□□□□ 0.72
SDC3-203ENST00000471567 DALRD3Q5D0E6 543 aaKnown RBP19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms