RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 SOGA3Q5TF21 947 aa12.09□□□□□ -0.47
SF3A1-206ENST00000471037 STYK1Q6J9G0 422 aa12.09□□□□□ -0.47
SF3A1-206ENST00000471037 DZIP3Q86Y13 1208 aaKnown RBP12.09□□□□□ -0.47
SF3A1-206ENST00000471037 CCDC24Q8N4L8 307 aa12.09□□□□□ -0.47
SF3A1-206ENST00000471037 TAOK3Q9H2K8 898 aa12.09□□□□□ -0.47
SF3A1-206ENST00000471037 RGL2O15211 777 aa12.08□□□□□ -0.48
SF3A1-206ENST00000471037 PRPF40BQ6NWY9 871 aaKnown RBP12.08□□□□□ -0.48
SF3A1-206ENST00000471037 CLEC4GQ6UXB4 293 aa12.08□□□□□ -0.48
SF3A1-206ENST00000471037 MASTLQ96GX5 879 aa12.08□□□□□ -0.48
SF3A1-206ENST00000471037 CFAP53Q96M91 514 aa12.08□□□□□ -0.48
SF3A1-206ENST00000471037 USP16Q9Y5T5 823 aa12.08□□□□□ -0.48
SF3A1-206ENST00000471037 SLX4Q8IY92 1834 aa12.07□□□□□ -0.48
SF3A1-206ENST00000471037 NPHP1O15259 732 aa12.07□□□□□ -0.48
SF3A1-206ENST00000471037 ZNF219Q9P2Y4 722 aaPredicted RBP12.07□□□□□ -0.48
SF3A1-206ENST00000471037 KLRG2A4D1S0 409 aaPredicted RBP12.06□□□□□ -0.48
SF3A1-206ENST00000471037 SNRPA1P09661 255 aaKnown RBP12.06□□□□□ -0.48
SF3A1-206ENST00000471037 NUDCQ9Y266 331 aa12.06□□□□□ -0.48
SF3A1-206ENST00000471037 ZNF652Q9Y2D9 606 aa12.06□□□□□ -0.48
SF3A1-206ENST00000471037 PRAMEF22A3QJZ6 481 aa12.05□□□□□ -0.48
SF3A1-206ENST00000471037 ANP32CO43423 234 aa12.05□□□□□ -0.48
SF3A1-206ENST00000471037 HTATSF1O43719 755 aaKnown RBP12.05□□□□□ -0.48
SF3A1-206ENST00000471037 PIP4K2AP48426 406 aaPredicted RBP12.05□□□□□ -0.48
SF3A1-206ENST00000471037 CNGB1Q14028 1251 aaPredicted RBP12.05□□□□□ -0.48
SF3A1-206ENST00000471037 CHADLQ6NUI6 762 aa12.05□□□□□ -0.48
SF3A1-206ENST00000471037 NBPF5PQ86XG9 351 aaPredicted RBP12.05□□□□□ -0.48
SF3A1-206ENST00000471037 C7orf43Q8WVR3 580 aa12.05□□□□□ -0.48
SF3A1-206ENST00000471037 RTF1Q92541 710 aaKnown RBP12.05□□□□□ -0.48
SF3A1-206ENST00000471037 PCNTO95613 3336 aa12.05□□□□□ -0.48
SF3A1-206ENST00000471037 CACNA1SQ13698 1873 aa12.04□□□□□ -0.48
SF3A1-206ENST00000471037 DDNO94850 711 aaPredicted RBP12.04□□□□□ -0.48
SF3A1-206ENST00000471037 HSPA1AP0DMV8 641 aaKnown RBP12.04□□□□□ -0.48
SF3A1-206ENST00000471037 HSPA1BP0DMV9 641 aaKnown RBP12.04□□□□□ -0.48
SF3A1-206ENST00000471037 NPR1P16066 1061 aa12.04□□□□□ -0.48
SF3A1-206ENST00000471037 CCDC93Q567U6 631 aa12.04□□□□□ -0.48
SF3A1-206ENST00000471037 MCM10Q7L590 875 aa12.04□□□□□ -0.48
SF3A1-206ENST00000471037 TNS4Q8IZW8 715 aa12.04□□□□□ -0.48
SF3A1-206ENST00000471037 L3MBTL3Q96JM7 780 aaPredicted RBP12.04□□□□□ -0.48
SF3A1-206ENST00000471037 CREBZFQ9NS37 354 aa12.04□□□□□ -0.48
SF3A1-206ENST00000471037 LAMB4A4D0S4 1761 aa12.03□□□□□ -0.48
SF3A1-206ENST00000471037 SCN4AP35499 1836 aa12.03□□□□□ -0.48
SF3A1-206ENST00000471037 IQCA1LA6NCM1 817 aa12.03□□□□□ -0.48
SF3A1-206ENST00000471037 NBPF26B4DH59 902 aa12.03□□□□□ -0.48
SF3A1-206ENST00000471037 POTEIP0CG38 1075 aa12.03□□□□□ -0.48
SF3A1-206ENST00000471037 POTEJP0CG39 1038 aa12.03□□□□□ -0.48
SF3A1-206ENST00000471037 U2AF1L5P0DN76 240 aaPredicted RBP12.03□□□□□ -0.48
SF3A1-206ENST00000471037 PPP2R1AP30153 589 aa12.03□□□□□ -0.48
SF3A1-206ENST00000471037 U2AF1Q01081 240 aaKnown RBP eCLIP12.03□□□□□ -0.48
SF3A1-206ENST00000471037 NBPF10Q6P3W6 841 aaKnown RBP12.03□□□□□ -0.48
SF3A1-206ENST00000471037 TPTE2Q6XPS3 522 aa12.03□□□□□ -0.48
SF3A1-206ENST00000471037 NBPF15Q8N660 670 aa12.03□□□□□ -0.48
SF3A1-206ENST00000471037 FKBP4Q02790 459 aaKnown RBP eCLIP12.02□□□□□ -0.49
SF3A1-206ENST00000471037 NIP7Q9Y221 180 aaKnown RBP eCLIP12.02□□□□□ -0.49
SF3A1-206ENST00000471037 PASKQ96RG2 1323 aa12.02□□□□□ -0.49
SF3A1-206ENST00000471037 DCTN1Q14203 1278 aa12.01□□□□□ -0.49
SF3A1-206ENST00000471037 TAF7Q15545 349 aaPredicted RBP12.01□□□□□ -0.49
SF3A1-206ENST00000471037 LDHDQ86WU2 507 aa12.01□□□□□ -0.49
SF3A1-206ENST00000471037 PRKRIP1Q9H875 184 aaPredicted RBP12.01□□□□□ -0.49
SF3A1-206ENST00000471037 SNED1Q8TER0 1413 aa12.01□□□□□ -0.49
SF3A1-206ENST00000471037 ADAMTSL1Q8N6G6 1762 aa12□□□□□ -0.49
SF3A1-206ENST00000471037 ALDH1B1P30837 517 aa12□□□□□ -0.49
SF3A1-206ENST00000471037 RALBP1Q15311 655 aa12□□□□□ -0.49
SF3A1-206ENST00000471037 RTKN2Q8IZC4 609 aa12□□□□□ -0.49
SF3A1-206ENST00000471037 TAF1DQ9H5J8 278 aaPredicted RBP12□□□□□ -0.49
SF3A1-206ENST00000471037 CNTNAP1P78357 1384 aa12□□□□□ -0.49
SF3A1-206ENST00000471037 RIC1Q4ADV7 1423 aa12□□□□□ -0.49
SF3A1-206ENST00000471037 KDM3BQ7LBC6 1761 aa12□□□□□ -0.49
SF3A1-206ENST00000471037 HLFQ16534 295 aa11.99□□□□□ -0.49
SF3A1-206ENST00000471037 CRY2Q49AN0 593 aa11.99□□□□□ -0.49
SF3A1-206ENST00000471037 ZNF277Q9NRM2 450 aaPredicted RBP11.99□□□□□ -0.49
SF3A1-206ENST00000471037 ZNF541Q9H0D2 1346 aa11.99□□□□□ -0.49
SF3A1-206ENST00000471037 IBTKQ9P2D0 1353 aaPredicted RBP11.99□□□□□ -0.49
SF3A1-206ENST00000471037 ABCC12Q96J65 1359 aa11.98□□□□□ -0.49
SF3A1-206ENST00000471037 ERVV-1B6SEH8 477 aa11.98□□□□□ -0.49
SF3A1-206ENST00000471037 FZD9O00144 591 aa11.98□□□□□ -0.49
SF3A1-206ENST00000471037 ITGBL1O95965 494 aaPredicted RBP11.98□□□□□ -0.49
SF3A1-206ENST00000471037 OLFM4Q6UX06 510 aa11.98□□□□□ -0.49
SF3A1-206ENST00000471037 MIER1Q8N108 512 aa11.98□□□□□ -0.49
SF3A1-206ENST00000471037 PSMD1Q99460 953 aa11.98□□□□□ -0.49
SF3A1-206ENST00000471037 MKRN1Q9UHC7 482 aaKnown RBP11.98□□□□□ -0.49
SF3A1-206ENST00000471037 HACL1Q9UJ83 578 aa11.98□□□□□ -0.49
SF3A1-206ENST00000471037 CAPN15O75808 1086 aa11.97□□□□□ -0.49
SF3A1-206ENST00000471037 IARSP41252 1262 aaKnown RBP11.97□□□□□ -0.49
SF3A1-206ENST00000471037 PNISRQ8TF01 805 aaKnown RBP11.97□□□□□ -0.49
SF3A1-206ENST00000471037 NYXQ9GZU5 481 aa11.97□□□□□ -0.49
SF3A1-206ENST00000471037 MAP3K15Q6ZN16 1313 aa11.96□□□□□ -0.49
SF3A1-206ENST00000471037 MYBBP1AQ9BQG0 1328 aaKnown RBP11.96□□□□□ -0.49
SF3A1-206ENST00000471037 TMEM88BA6NKF7 163 aa11.96□□□□□ -0.49
SF3A1-206ENST00000471037 FAM177BA6PVY3 158 aa11.96□□□□□ -0.49
SF3A1-206ENST00000471037 GTF2E1P29083 439 aaPredicted RBP11.96□□□□□ -0.49
SF3A1-206ENST00000471037 EPHX2P34913 555 aa11.96□□□□□ -0.49
SF3A1-206ENST00000471037 CC2D2BQ6DHV5 1058 aa11.96□□□□□ -0.49
SF3A1-206ENST00000471037 PNMA8AQ86V59 439 aaPredicted RBP11.96□□□□□ -0.49
SF3A1-206ENST00000471037 GPC2Q8N158 579 aa11.96□□□□□ -0.49
SF3A1-206ENST00000471037 SYNE4Q8N205 404 aa11.96□□□□□ -0.49
SF3A1-206ENST00000471037 MIS18AQ9NYP9 233 aa11.96□□□□□ -0.49
SF3A1-206ENST00000471037 RNF123Q5XPI4 1314 aa11.95□□□□□ -0.5
SF3A1-206ENST00000471037 CCER2I3L3R5 266 aa11.95□□□□□ -0.5
SF3A1-206ENST00000471037 NEFMP07197 916 aa11.95□□□□□ -0.5
SF3A1-206ENST00000471037 HOXA10P31260 410 aaPredicted RBP11.95□□□□□ -0.5
SF3A1-206ENST00000471037 EIF4A1P60842 406 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms