RNA–Protein interactions for RNA: ENST00000466489.1

PMF1-204, Transcript of polyamine modulated factor 1, humanhuman

TSL 1 (best)

Gene PMF1, Length 933 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMF1-204ENST00000466489 C8orf58Q8NAV2 365 aa12.69□□□□□ -0.38
PMF1-204ENST00000466489 DDX21Q9NR30 783 aaKnown RBP eCLIP12.69□□□□□ -0.38
PMF1-204ENST00000466489 NBPF26B4DH59 902 aa12.68□□□□□ -0.38
PMF1-204ENST00000466489 RGL2O15211 777 aa12.68□□□□□ -0.38
PMF1-204ENST00000466489 PIP4K2AP48426 406 aaPredicted RBP12.68□□□□□ -0.38
PMF1-204ENST00000466489 IRX6P78412 446 aaPredicted RBP12.68□□□□□ -0.38
PMF1-204ENST00000466489 NBPF10Q6P3W6 841 aaKnown RBP12.68□□□□□ -0.38
PMF1-204ENST00000466489 NBPF15Q8N660 670 aa12.68□□□□□ -0.38
PMF1-204ENST00000466489 ZNF428Q96B54 188 aa12.68□□□□□ -0.38
PMF1-204ENST00000466489 PDGFDQ9GZP0 370 aaPredicted RBP12.68□□□□□ -0.38
PMF1-204ENST00000466489 CHPF2Q9P2E5 772 aa12.68□□□□□ -0.38
PMF1-204ENST00000466489 ATF5Q9Y2D1 282 aaPredicted RBP12.68□□□□□ -0.38
PMF1-204ENST00000466489 COL24A1Q17RW2 1714 aa12.68□□□□□ -0.38
PMF1-204ENST00000466489 DDX58O95786 925 aaKnown RBP12.67□□□□□ -0.38
PMF1-204ENST00000466489 CT47B1P0C2W7 299 aaPredicted RBP12.67□□□□□ -0.38
PMF1-204ENST00000466489 USPL1Q5W0Q7 1092 aa12.67□□□□□ -0.38
PMF1-204ENST00000466489 MSL1Q68DK7 614 aa12.67□□□□□ -0.38
PMF1-204ENST00000466489 AMIGO3Q86WK7 504 aa12.67□□□□□ -0.38
PMF1-204ENST00000466489 DAXXQ9UER7 740 aaPredicted RBP12.67□□□□□ -0.38
PMF1-204ENST00000466489 TBC1D2BQ9UPU7 963 aa12.67□□□□□ -0.38
PMF1-204ENST00000466489 NUP98P52948 1817 aa12.67□□□□□ -0.38
PMF1-204ENST00000466489 GYS1P13807 737 aa12.66□□□□□ -0.38
PMF1-204ENST00000466489 CLEC4GQ6UXB4 293 aa12.66□□□□□ -0.38
PMF1-204ENST00000466489 CENPQQ7L2Z9 268 aaPredicted RBP12.66□□□□□ -0.38
PMF1-204ENST00000466489 SPINK5Q9NQ38 1064 aaPredicted RBP12.66□□□□□ -0.38
PMF1-204ENST00000466489 PARP3Q9Y6F1 533 aa12.66□□□□□ -0.38
PMF1-204ENST00000466489 MAP3K15Q6ZN16 1313 aa12.65□□□□□ -0.38
PMF1-204ENST00000466489 ERVV-1B6SEH8 477 aa12.65□□□□□ -0.38
PMF1-204ENST00000466489 NPHP1O15259 732 aa12.65□□□□□ -0.38
PMF1-204ENST00000466489 HSP90AB3PQ58FF7 597 aa12.65□□□□□ -0.38
PMF1-204ENST00000466489 SMIM5Q71RC9 77 aa12.65□□□□□ -0.38
PMF1-204ENST00000466489 TSPYL6Q8N831 410 aa12.65□□□□□ -0.38
PMF1-204ENST00000466489 CDCA7LQ96GN5 454 aa12.65□□□□□ -0.38
PMF1-204ENST00000466489 SRP68Q9UHB9 627 aaKnown RBP12.65□□□□□ -0.38
PMF1-204ENST00000466489 ANKRD36CQ5JPF3 1778 aa12.65□□□□□ -0.38
PMF1-204ENST00000466489 VAMP4O75379 141 aa12.64□□□□□ -0.39
PMF1-204ENST00000466489 MMP10P09238 476 aa12.64□□□□□ -0.39
PMF1-204ENST00000466489 AIMP1Q12904 312 aaKnown RBP12.64□□□□□ -0.39
PMF1-204ENST00000466489 COPS6Q7L5N1 327 aa12.64□□□□□ -0.39
PMF1-204ENST00000466489 XAGE3Q8WTP9 111 aa12.64□□□□□ -0.39
PMF1-204ENST00000466489 SETDB2Q96T68 719 aa12.64□□□□□ -0.39
PMF1-204ENST00000466489 CAMTA2O94983 1202 aa12.63□□□□□ -0.39
PMF1-204ENST00000466489 ANXA1P04083 346 aa12.63□□□□□ -0.39
PMF1-204ENST00000466489 SLC4A2P04920 1241 aa12.63□□□□□ -0.39
PMF1-204ENST00000466489 PDIA6Q15084 440 aa12.63□□□□□ -0.39
PMF1-204ENST00000466489 PROSER3Q2NL68 480 aa12.63□□□□□ -0.39
PMF1-204ENST00000466489 ZBTB3Q9H5J0 574 aa12.63□□□□□ -0.39
PMF1-204ENST00000466489 CARMIL3Q8ND23 1372 aa12.63□□□□□ -0.39
PMF1-204ENST00000466489 ARFGEF2Q9Y6D5 1785 aa12.63□□□□□ -0.39
PMF1-204ENST00000466489 BICDL1Q6ZP65 573 aa12.62□□□□□ -0.39
PMF1-204ENST00000466489 ANKRD13DQ6ZTN6 518 aa12.62□□□□□ -0.39
PMF1-204ENST00000466489 TRMT2AQ8IZ69 625 aaKnown RBP12.62□□□□□ -0.39
PMF1-204ENST00000466489 KLHL34Q8N239 644 aa12.62□□□□□ -0.39
PMF1-204ENST00000466489 PLBD2Q8NHP8 589 aa12.62□□□□□ -0.39
PMF1-204ENST00000466489 PTGER2P43116 358 aa12.61□□□□□ -0.39
PMF1-204ENST00000466489 TTLL7Q6ZT98 887 aa12.61□□□□□ -0.39
PMF1-204ENST00000466489 RIC3Q7Z5B4 369 aa12.61□□□□□ -0.39
PMF1-204ENST00000466489 NIP7Q9Y221 180 aaKnown RBP eCLIP12.61□□□□□ -0.397e-6■■■■■ 33.4
PMF1-204ENST00000466489 ATP10DQ9P241 1426 aa12.61□□□□□ -0.39
PMF1-204ENST00000466489 AFDNP55196 1824 aaKnown RBP12.6□□□□□ -0.39
PMF1-204ENST00000466489 GTF2E1P29083 439 aaPredicted RBP12.6□□□□□ -0.39
PMF1-204ENST00000466489 NEXNQ0ZGT2 675 aa12.6□□□□□ -0.39
PMF1-204ENST00000466489 FKBP5Q13451 457 aaPredicted RBP12.6□□□□□ -0.39
PMF1-204ENST00000466489 NFIXQ14938 502 aa12.6□□□□□ -0.39
PMF1-204ENST00000466489 ALDH1L2Q3SY69 923 aa12.6□□□□□ -0.39
PMF1-204ENST00000466489 PARP10Q53GL7 1025 aa12.6□□□□□ -0.39
PMF1-204ENST00000466489 GIGYF2Q6Y7W6 1299 aaKnown RBP12.6□□□□□ -0.39
PMF1-204ENST00000466489 LRP10Q7Z4F1 713 aa12.6□□□□□ -0.39
PMF1-204ENST00000466489 SGIP1Q9BQI5 828 aa12.6□□□□□ -0.39
PMF1-204ENST00000466489 NYXQ9GZU5 481 aa12.6□□□□□ -0.39
PMF1-204ENST00000466489 SMC4Q9NTJ3 1288 aa12.6□□□□□ -0.39
PMF1-204ENST00000466489 EIF5BO60841 1220 aaKnown RBP12.59□□□□□ -0.39
PMF1-204ENST00000466489 TM4SF1P30408 202 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 ST5P78524 1137 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 FLIIQ13045 1269 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 PDE3AQ14432 1141 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 TBC1D9BQ66K14 1250 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 TPTE2Q6XPS3 522 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 PPP1R42Q7Z4L9 355 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 NBPF5PQ86XG9 351 aaPredicted RBP12.59□□□□□ -0.39
PMF1-204ENST00000466489 CNBD1Q8NA66 436 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 BACH2Q9BYV9 841 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 BCL2L12Q9HB09 334 aa12.59□□□□□ -0.39
PMF1-204ENST00000466489 IBTKQ9P2D0 1353 aaPredicted RBP12.58□□□□□ -0.4
PMF1-204ENST00000466489 POLRMTO00411 1230 aaKnown RBP12.58□□□□□ -0.4
PMF1-204ENST00000466489 SERPINB2P05120 415 aa12.58□□□□□ -0.4
PMF1-204ENST00000466489 KSR2Q6VAB6 950 aa12.58□□□□□ -0.4
PMF1-204ENST00000466489 PHAXQ9H814 394 aaKnown RBP12.58□□□□□ -0.4
PMF1-204ENST00000466489 CD2APQ9Y5K6 639 aa12.58□□□□□ -0.4
PMF1-204ENST00000466489 KIF16BQ96L93 1317 aa12.58□□□□□ -0.4
PMF1-204ENST00000466489 KIF13BQ9NQT8 1826 aa12.58□□□□□ -0.4
PMF1-204ENST00000466489 NRXN2Q9P2S2 1712 aa12.57□□□□□ -0.4
PMF1-204ENST00000466489 DCAF8L1A6NGE4 600 aa12.57□□□□□ -0.4
PMF1-204ENST00000466489 HSP90B1P14625 803 aaKnown RBP12.57□□□□□ -0.4
PMF1-204ENST00000466489 PDE4AP27815 886 aa12.57□□□□□ -0.4
PMF1-204ENST00000466489 DDR1Q08345 913 aa12.57□□□□□ -0.4
PMF1-204ENST00000466489 TCIRG1Q13488 830 aa12.57□□□□□ -0.4
PMF1-204ENST00000466489 HLFQ16534 295 aa12.57□□□□□ -0.4
PMF1-204ENST00000466489 PDZRN3Q9UPQ7 1066 aa12.57□□□□□ -0.4
PMF1-204ENST00000466489 PTPRCP08575 1304 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms