RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 C16orf71Q8IYS4 520 aaPredicted RBP27.48■■□□□ 1.99
COL6A1-203ENST00000466285 SETDB2Q96T68 719 aa27.48■■□□□ 1.99
COL6A1-203ENST00000466285 THUMPD2Q9BTF0 503 aaKnown RBP27.48■■□□□ 1.99
COL6A1-203ENST00000466285 ZC3H4Q9UPT8 1303 aaKnown RBP27.47■■□□□ 1.99
COL6A1-203ENST00000466285 NUP98P52948 1817 aa27.47■■□□□ 1.99
COL6A1-203ENST00000466285 PDE6BP35913 854 aa27.47■■□□□ 1.99
COL6A1-203ENST00000466285 GLTPD2A6NH11 291 aa27.45■■□□□ 1.98
COL6A1-203ENST00000466285 POTECB2RU33 542 aa27.45■■□□□ 1.98
COL6A1-203ENST00000466285 SRGNP10124 158 aa27.45■■□□□ 1.98
COL6A1-203ENST00000466285 PRPF40BQ6NWY9 871 aaKnown RBP27.45■■□□□ 1.98
COL6A1-203ENST00000466285 HLFQ16534 295 aa27.44■■□□□ 1.98
COL6A1-203ENST00000466285 IFFO2Q5TF58 517 aa27.44■■□□□ 1.98
COL6A1-203ENST00000466285 PLEKHF1Q96S99 279 aa27.44■■□□□ 1.98
COL6A1-203ENST00000466285 FSTL1Q12841 308 aa27.43■■□□□ 1.98
COL6A1-203ENST00000466285 ST5P78524 1137 aa27.42■■□□□ 1.98
COL6A1-203ENST00000466285 OLFM4Q6UX06 510 aa27.42■■□□□ 1.98
COL6A1-203ENST00000466285 PCNTO95613 3336 aa27.41■■□□□ 1.98
COL6A1-203ENST00000466285 ABCC12Q96J65 1359 aa27.41■■□□□ 1.98
COL6A1-203ENST00000466285 FAM177BA6PVY3 158 aa27.41■■□□□ 1.98
COL6A1-203ENST00000466285 HTATSF1O43719 755 aaKnown RBP27.41■■□□□ 1.98
COL6A1-203ENST00000466285 TAF7Q15545 349 aaPredicted RBP27.41■■□□□ 1.98
COL6A1-203ENST00000466285 NBPF5PQ86XG9 351 aaPredicted RBP27.41■■□□□ 1.98
COL6A1-203ENST00000466285 NPHP1O15259 732 aa27.4■■□□□ 1.98
COL6A1-203ENST00000466285 STYK1Q6J9G0 422 aa27.4■■□□□ 1.98
COL6A1-203ENST00000466285 NPM2Q86SE8 214 aaKnown RBP27.4■■□□□ 1.98
COL6A1-203ENST00000466285 SLC51AQ86UW1 340 aa27.39■■□□□ 1.98
COL6A1-203ENST00000466285 NIP7Q9Y221 180 aaKnown RBP eCLIP27.39■■□□□ 1.98
COL6A1-203ENST00000466285 TAOK3Q9H2K8 898 aa27.38■■□□□ 1.97
COL6A1-203ENST00000466285 LTBP3Q9NS15 1303 aa27.38■■□□□ 1.97
COL6A1-203ENST00000466285 ERFEQ4G0M1 354 aa27.37■■□□□ 1.97
COL6A1-203ENST00000466285 CLEC4GQ6UXB4 293 aa27.37■■□□□ 1.97
COL6A1-203ENST00000466285 SMC1BQ8NDV3 1235 aa27.37■■□□□ 1.97
COL6A1-203ENST00000466285 C7orf43Q8WVR3 580 aa27.37■■□□□ 1.97
COL6A1-203ENST00000466285 MASTLQ96GX5 879 aa27.37■■□□□ 1.97
COL6A1-203ENST00000466285 PDZRN3Q9UPQ7 1066 aa27.37■■□□□ 1.97
COL6A1-203ENST00000466285 VEGFAP15692 232 aaPredicted RBP27.36■■□□□ 1.97
COL6A1-203ENST00000466285 NFE2L2Q16236 605 aa27.36■■□□□ 1.97
COL6A1-203ENST00000466285 NGEFQ8N5V2 710 aa27.36■■□□□ 1.97
COL6A1-203ENST00000466285 CNKSR1Q969H4 720 aa27.36■■□□□ 1.97
COL6A1-203ENST00000466285 KLRG1Q96E93 195 aa27.36■■□□□ 1.97
COL6A1-203ENST00000466285 POTEIP0CG38 1075 aa27.35■■□□□ 1.97
COL6A1-203ENST00000466285 POTEJP0CG39 1038 aa27.35■■□□□ 1.97
COL6A1-203ENST00000466285 EIF4A1P60842 406 aaKnown RBP27.35■■□□□ 1.97
COL6A1-203ENST00000466285 TTLL7Q6ZT98 887 aa27.35■■□□□ 1.97
COL6A1-203ENST00000466285 ZNF652Q9Y2D9 606 aa27.35■■□□□ 1.97
COL6A1-203ENST00000466285 SNED1Q8TER0 1413 aa27.34■■□□□ 1.97
COL6A1-203ENST00000466285 COL4A5P29400 1685 aa27.33■■□□□ 1.97
COL6A1-203ENST00000466285 KLRG2A4D1S0 409 aaPredicted RBP27.33■■□□□ 1.97
COL6A1-203ENST00000466285 DDNO94850 711 aaPredicted RBP27.32■■□□□ 1.96
COL6A1-203ENST00000466285 UBN2Q6ZU65 1347 aa27.32■■□□□ 1.96
COL6A1-203ENST00000466285 NUTM1Q86Y26 1132 aa27.31■■□□□ 1.96
COL6A1-203ENST00000466285 NPR1P16066 1061 aa27.3■■□□□ 1.96
COL6A1-203ENST00000466285 JMYQ8N9B5 988 aa27.3■■□□□ 1.96
COL6A1-203ENST00000466285 ZNF541Q9H0D2 1346 aa27.3■■□□□ 1.96
COL6A1-203ENST00000466285 MYL6BP14649 208 aa27.29■■□□□ 1.96
COL6A1-203ENST00000466285 RRP7AQ9Y3A4 280 aaKnown RBP27.29■■□□□ 1.96
COL6A1-203ENST00000466285 ANKRD36CQ5JPF3 1778 aa27.29■■□□□ 1.96
COL6A1-203ENST00000466285 LAMB2P55268 1798 aa27.28■■□□□ 1.96
COL6A1-203ENST00000466285 MAP3K15Q6ZN16 1313 aa27.28■■□□□ 1.96
COL6A1-203ENST00000466285 ZBTB3Q9H5J0 574 aa27.28■■□□□ 1.96
COL6A1-203ENST00000466285 ZNF277Q9NRM2 450 aaPredicted RBP27.28■■□□□ 1.96
COL6A1-203ENST00000466285 SCN4AP35499 1836 aa27.27■■□□□ 1.96
COL6A1-203ENST00000466285 ADAMTSL1Q8N6G6 1762 aa27.27■■□□□ 1.96
COL6A1-203ENST00000466285 RGL2O15211 777 aa27.27■■□□□ 1.96
COL6A1-203ENST00000466285 GPTP24298 496 aa27.27■■□□□ 1.96
COL6A1-203ENST00000466285 CCDC93Q567U6 631 aa27.27■■□□□ 1.96
COL6A1-203ENST00000466285 TPTE2Q6XPS3 522 aa27.26■■□□□ 1.95
COL6A1-203ENST00000466285 C3orf67Q6ZVT6 689 aa27.26■■□□□ 1.95
COL6A1-203ENST00000466285 MAPK8IP3Q9UPT6 1336 aa27.25■■□□□ 1.95
COL6A1-203ENST00000466285 PROSER3Q2NL68 480 aa27.25■■□□□ 1.95
COL6A1-203ENST00000466285 LRP10Q7Z4F1 713 aa27.25■■□□□ 1.95
COL6A1-203ENST00000466285 PNISRQ8TF01 805 aaKnown RBP27.25■■□□□ 1.95
COL6A1-203ENST00000466285 LTBP1Q14766 1721 aa27.24■■□□□ 1.95
COL6A1-203ENST00000466285 ANXA1P04083 346 aa27.24■■□□□ 1.95
COL6A1-203ENST00000466285 DPY19L2Q6NUT2 758 aa27.24■■□□□ 1.95
COL6A1-203ENST00000466285 FKBP4Q02790 459 aaKnown RBP eCLIP27.23■■□□□ 1.95
COL6A1-203ENST00000466285 CRY2Q49AN0 593 aa27.23■■□□□ 1.95
COL6A1-203ENST00000466285 SOGA3Q5TF21 947 aa27.23■■□□□ 1.95
COL6A1-203ENST00000466285 RIC1Q4ADV7 1423 aa27.23■■□□□ 1.95
COL6A1-203ENST00000466285 NEFMP07197 916 aa27.22■■□□□ 1.95
COL6A1-203ENST00000466285 SUSD4Q5VX71 490 aa27.22■■□□□ 1.95
COL6A1-203ENST00000466285 ERVV-1B6SEH8 477 aa27.21■■□□□ 1.95
COL6A1-203ENST00000466285 PDIA6Q15084 440 aa27.21■■□□□ 1.95
COL6A1-203ENST00000466285 TSPYL4Q9UJ04 414 aa27.21■■□□□ 1.95
COL6A1-203ENST00000466285 IBTKQ9P2D0 1353 aaPredicted RBP27.21■■□□□ 1.95
COL6A1-203ENST00000466285 KIF6Q6ZMV9 814 aa27.2■■□□□ 1.94
COL6A1-203ENST00000466285 NTSR2O95665 410 aa27.19■■□□□ 1.94
COL6A1-203ENST00000466285 COL13A1Q5TAT6 717 aaPredicted RBP27.19■■□□□ 1.94
COL6A1-203ENST00000466285 CCDC146Q8IYE0 955 aa27.19■■□□□ 1.94
COL6A1-203ENST00000466285 GTF2E1P29083 439 aaPredicted RBP27.18■■□□□ 1.94
COL6A1-203ENST00000466285 RIPK4P57078 832 aa27.18■■□□□ 1.94
COL6A1-203ENST00000466285 KRT24Q2M2I5 525 aa27.18■■□□□ 1.94
COL6A1-203ENST00000466285 CHADLQ6NUI6 762 aa27.18■■□□□ 1.94
COL6A1-203ENST00000466285 ZNF34Q8IZ26 560 aa27.18■■□□□ 1.94
COL6A1-203ENST00000466285 L3MBTL3Q96JM7 780 aaPredicted RBP27.18■■□□□ 1.94
COL6A1-203ENST00000466285 TAF1P21675 1872 aa27.18■■□□□ 1.94
COL6A1-203ENST00000466285 IARSP41252 1262 aaKnown RBP27.16■■□□□ 1.94
COL6A1-203ENST00000466285 TMPOP42166 694 aaKnown RBP27.16■■□□□ 1.94
COL6A1-203ENST00000466285 SYNE4Q8N205 404 aa27.16■■□□□ 1.94
COL6A1-203ENST00000466285 NECTIN2Q92692 538 aa27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms