RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 CCDC24Q8N4L8 307 aa15.09■□□□□ 0.01
CUX1-207ENST00000465461 XAGE3Q8WTP9 111 aa15.09■□□□□ 0.01
CUX1-207ENST00000465461 CDCA7LQ96GN5 454 aa15.09■□□□□ 0.01
CUX1-207ENST00000465461 DDX21Q9NR30 783 aaKnown RBP eCLIP15.09■□□□□ 0.01
CUX1-207ENST00000465461 WWC3Q9ULE0 1092 aa15.09■□□□□ 0.01
CUX1-207ENST00000465461 ERBB4Q15303 1308 aa15.09■□□□□ 0.01
CUX1-207ENST00000465461 SCN7AQ01118 1682 aa15.09■□□□□ 0.01
CUX1-207ENST00000465461 HOXB7P09629 217 aa15.08■□□□□ 0
CUX1-207ENST00000465461 GOLGA2Q08379 1002 aa15.08■□□□□ 0
CUX1-207ENST00000465461 TWISTNBQ3B726 338 aaPredicted RBP15.08■□□□□ 0
CUX1-207ENST00000465461 BCORQ6W2J9 1755 aa15.08■□□□□ 0
CUX1-207ENST00000465461 FAM177BA6PVY3 158 aa15.07■□□□□ 0
CUX1-207ENST00000465461 SERPINB2P05120 415 aa15.07■□□□□ 0
CUX1-207ENST00000465461 KIF6Q6ZMV9 814 aa15.07■□□□□ 0
CUX1-207ENST00000465461 PHAXQ9H814 394 aaKnown RBP15.07■□□□□ 0
CUX1-207ENST00000465461 DBF4Q9UBU7 674 aaPredicted RBP15.07■□□□□ 0
CUX1-207ENST00000465461 MAP3K15Q6ZN16 1313 aa15.07■□□□□ 0
CUX1-207ENST00000465461 ZNF428Q96B54 188 aa15.06■□□□□ 0
CUX1-207ENST00000465461 MYH16Q9H6N6 1097 aa15.06■□□□□ 0
CUX1-207ENST00000465461 VAMP4O75379 141 aa15.05■□□□□ -0
CUX1-207ENST00000465461 GPTP24298 496 aa15.05■□□□□ -0
CUX1-207ENST00000465461 HNRNPUQ00839 825 aaKnown RBP eCLIP15.05■□□□□ -0
CUX1-207ENST00000465461 SLFN5Q08AF3 891 aa15.05■□□□□ -0
CUX1-207ENST00000465461 SETDB2Q96T68 719 aa15.05■□□□□ -0
CUX1-207ENST00000465461 NIP7Q9Y221 180 aaKnown RBP eCLIP15.05■□□□□ -0
CUX1-207ENST00000465461 CD2APQ9Y5K6 639 aa15.05■□□□□ -0
CUX1-207ENST00000465461 AFDNP55196 1824 aaKnown RBP15.05■□□□□ -0
CUX1-207ENST00000465461 ERVV-1B6SEH8 477 aa15.04■□□□□ -0
CUX1-207ENST00000465461 CCDC30Q5VVM6 783 aa15.04■□□□□ -0
CUX1-207ENST00000465461 CLEC4GQ6UXB4 293 aa15.04■□□□□ -0
CUX1-207ENST00000465461 PELP1Q8IZL8 1130 aaKnown RBP15.04■□□□□ -0
CUX1-207ENST00000465461 ZNF652Q9Y2D9 606 aa15.04■□□□□ -0
CUX1-207ENST00000465461 C10orf71Q711Q0 1435 aa15.03■□□□□ -0
CUX1-207ENST00000465461 CARMIL3Q8ND23 1372 aa15.03■□□□□ -0
CUX1-207ENST00000465461 A0A0G2JLW4 131 aa15.03■□□□□ -0
CUX1-207ENST00000465461 G2E3Q7L622 706 aa15.03■□□□□ -0
CUX1-207ENST00000465461 HYPKQ9NX55 129 aa15.03■□□□□ -0
CUX1-207ENST00000465461 NUP98P52948 1817 aa15.03■□□□□ -0
CUX1-207ENST00000465461 E9PSI1 815 aa15.02■□□□□ -0
CUX1-207ENST00000465461 DPEP1P16444 411 aa15.02■□□□□ -0
CUX1-207ENST00000465461 CHRNA5P30532 468 aa15.02■□□□□ -0
CUX1-207ENST00000465461 PRR5LQ6MZQ0 368 aa15.02■□□□□ -0
CUX1-207ENST00000465461 GIGYF2Q6Y7W6 1299 aaKnown RBP15.02■□□□□ -0
CUX1-207ENST00000465461 N4BP2Q86UW6 1770 aaPredicted RBP15.01□□□□□ -0.01
CUX1-207ENST00000465461 UBN2Q6ZU65 1347 aa15.01□□□□□ -0.01
CUX1-207ENST00000465461 NPHP1O15259 732 aa15.01□□□□□ -0.01
CUX1-207ENST00000465461 SLC4A2P04920 1241 aa15.01□□□□□ -0.01
CUX1-207ENST00000465461 ANKRD13DQ6ZTN6 518 aa15.01□□□□□ -0.01
CUX1-207ENST00000465461 NBPF5PQ86XG9 351 aaPredicted RBP15.01□□□□□ -0.01
CUX1-207ENST00000465461 NRXN2Q9P2S2 1712 aa15□□□□□ -0.01
CUX1-207ENST00000465461 SUSD4Q5VX71 490 aa15□□□□□ -0.01
CUX1-207ENST00000465461 NUTM1Q86Y26 1132 aa15□□□□□ -0.01
CUX1-207ENST00000465461 ZNF34Q8IZ26 560 aa15□□□□□ -0.01
CUX1-207ENST00000465461 PLBD2Q8NHP8 589 aa15□□□□□ -0.01
CUX1-207ENST00000465461 STK31Q9BXU1 1019 aa15□□□□□ -0.01
CUX1-207ENST00000465461 KIF13BQ9NQT8 1826 aa15□□□□□ -0.01
CUX1-207ENST00000465461 PXDNLA1KZ92 1463 aa15□□□□□ -0.01
CUX1-207ENST00000465461 ATP5J2-PTCD1G3V325 749 aa14.99□□□□□ -0.01
CUX1-207ENST00000465461 YBX3P16989 372 aaKnown RBP eCLIP14.99□□□□□ -0.01
CUX1-207ENST00000465461 KCNA3P22001 575 aa14.99□□□□□ -0.01
CUX1-207ENST00000465461 GPR162Q16538 588 aa14.99□□□□□ -0.01
CUX1-207ENST00000465461 RIC3Q7Z5B4 369 aa14.99□□□□□ -0.01
CUX1-207ENST00000465461 TRMT2AQ8IZ69 625 aaKnown RBP14.99□□□□□ -0.01
CUX1-207ENST00000465461 CNBD1Q8NA66 436 aa14.99□□□□□ -0.01
CUX1-207ENST00000465461 KIAA1551Q9HCM1 1747 aa14.99□□□□□ -0.01
CUX1-207ENST00000465461 TGFB2P61812 414 aa14.98□□□□□ -0.01
CUX1-207ENST00000465461 TCIRG1Q13488 830 aa14.98□□□□□ -0.01
CUX1-207ENST00000465461 ERFEQ4G0M1 354 aa14.98□□□□□ -0.01
CUX1-207ENST00000465461 ATP10DQ9P241 1426 aa14.98□□□□□ -0.01
CUX1-207ENST00000465461 RGL2O15211 777 aa14.97□□□□□ -0.01
CUX1-207ENST00000465461 GTF2E1P29083 439 aaPredicted RBP14.97□□□□□ -0.01
CUX1-207ENST00000465461 TPTE2Q6XPS3 522 aa14.97□□□□□ -0.01
CUX1-207ENST00000465461 C2CD5Q86YS7 1000 aa14.97□□□□□ -0.01
CUX1-207ENST00000465461 ANKRD31Q8N7Z5 1873 aa14.97□□□□□ -0.01
CUX1-207ENST00000465461 PI4KAP2A4QPH2 592 aa14.96□□□□□ -0.01
CUX1-207ENST00000465461 ST5P78524 1137 aa14.96□□□□□ -0.01
CUX1-207ENST00000465461 NLRP10Q86W26 655 aa14.96□□□□□ -0.01
CUX1-207ENST00000465461 SYNE4Q8N205 404 aa14.96□□□□□ -0.01
CUX1-207ENST00000465461 PI4KAP1Q8N8J0 262 aa14.96□□□□□ -0.01
CUX1-207ENST00000465461 MYD88Q99836 296 aa14.96□□□□□ -0.01
CUX1-207ENST00000465461 MAP3K2Q9Y2U5 619 aa14.96□□□□□ -0.01
CUX1-207ENST00000465461 ARFGEF2Q9Y6D5 1785 aa14.96□□□□□ -0.02
CUX1-207ENST00000465461 NTSR2O95665 410 aa14.95□□□□□ -0.02
CUX1-207ENST00000465461 FLIIQ13045 1269 aa14.95□□□□□ -0.02
CUX1-207ENST00000465461 HSP90AB3PQ58FF7 597 aa14.95□□□□□ -0.02
CUX1-207ENST00000465461 BRIP1Q9BX63 1249 aa14.95□□□□□ -0.02
CUX1-207ENST00000465461 BCL2L13Q9BXK5 485 aa14.95□□□□□ -0.02
CUX1-207ENST00000465461 CHMP4AQ9BY43 222 aa14.95□□□□□ -0.02
CUX1-207ENST00000465461 BCS1LQ9Y276 419 aa14.95□□□□□ -0.02
CUX1-207ENST00000465461 ABCC12Q96J65 1359 aa14.95□□□□□ -0.02
CUX1-207ENST00000465461 ANKRD36CQ5JPF3 1778 aa14.94□□□□□ -0.02
CUX1-207ENST00000465461 DCAF8L1A6NGE4 600 aa14.94□□□□□ -0.02
CUX1-207ENST00000465461 RTL5Q5HYW3 569 aaPredicted RBP14.94□□□□□ -0.02
CUX1-207ENST00000465461 KSR2Q6VAB6 950 aa14.94□□□□□ -0.02
CUX1-207ENST00000465461 JARID2Q92833 1246 aaPredicted RBP14.94□□□□□ -0.02
CUX1-207ENST00000465461 ISCA1Q9BUE6 129 aa14.94□□□□□ -0.02
CUX1-207ENST00000465461 UTP14AQ9BVJ6 771 aaKnown RBP14.94□□□□□ -0.02
CUX1-207ENST00000465461 ADCY9O60503 1353 aa14.94□□□□□ -0.02
CUX1-207ENST00000465461 H0YIN7 160 aa14.93□□□□□ -0.02
CUX1-207ENST00000465461 DDX58O95786 925 aaKnown RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms