RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 THBS1P07996 1170 aa11.24□□□□□ -0.61
PTCD3-205ENST00000464541 UBAP2LQ14157 1087 aaKnown RBP11.24□□□□□ -0.61
PTCD3-205ENST00000464541 PHF24Q9UPV7 400 aa11.24□□□□□ -0.61
PTCD3-205ENST00000464541 IER5Q5VY09 327 aa11.23□□□□□ -0.61
PTCD3-205ENST00000464541 PHLDB3Q6NSJ2 640 aa11.23□□□□□ -0.61
PTCD3-205ENST00000464541 C16orf46Q6P387 395 aa11.23□□□□□ -0.61
PTCD3-205ENST00000464541 GTPBP3Q969Y2 492 aaKnown RBP11.23□□□□□ -0.61
PTCD3-205ENST00000464541 TRAIPQ9BWF2 469 aa11.23□□□□□ -0.61
PTCD3-205ENST00000464541 CFHR5Q9BXR6 569 aa11.23□□□□□ -0.61
PTCD3-205ENST00000464541 PCDHGC4Q9Y5F7 938 aa11.23□□□□□ -0.61
PTCD3-205ENST00000464541 SUSD3Q96L08 255 aa11.22□□□□□ -0.61
PTCD3-205ENST00000464541 MKNK1Q9BUB5 465 aa11.22□□□□□ -0.61
PTCD3-205ENST00000464541 ZCCHC2Q9C0B9 1178 aaKnown RBP11.22□□□□□ -0.61
PTCD3-205ENST00000464541 ERBB4Q15303 1308 aa11.21□□□□□ -0.61
PTCD3-205ENST00000464541 BRD1O95696 1058 aa11.21□□□□□ -0.61
PTCD3-205ENST00000464541 FAM157BP0CG42 384 aa11.21□□□□□ -0.61
PTCD3-205ENST00000464541 C11orf91Q3C1V1 193 aa11.21□□□□□ -0.61
PTCD3-205ENST00000464541 ATXN7L1Q9ULK2 861 aaPredicted RBP11.21□□□□□ -0.61
PTCD3-205ENST00000464541 TGFBR3LH3BV60 316 aa11.2□□□□□ -0.62
PTCD3-205ENST00000464541 ATXN7O15265 892 aaPredicted RBP11.2□□□□□ -0.62
PTCD3-205ENST00000464541 COX20Q5RI15 118 aa11.2□□□□□ -0.62
PTCD3-205ENST00000464541 LRRC69Q6ZNQ3 347 aa11.2□□□□□ -0.62
PTCD3-205ENST00000464541 NDFIP2Q9NV92 336 aa11.2□□□□□ -0.62
PTCD3-205ENST00000464541 ARID4AP29374 1257 aaPredicted RBP11.19□□□□□ -0.62
PTCD3-205ENST00000464541 DGKZQ13574 1117 aa11.19□□□□□ -0.62
PTCD3-205ENST00000464541 LAMC2Q13753 1193 aa11.19□□□□□ -0.62
PTCD3-205ENST00000464541 LCE2AQ5TA79 106 aaPredicted RBP11.19□□□□□ -0.62
PTCD3-205ENST00000464541 GPR161Q8N6U8 529 aaKnown RBP11.18□□□□□ -0.62
PTCD3-205ENST00000464541 LRFN2Q9ULH4 789 aa11.18□□□□□ -0.62
PTCD3-205ENST00000464541 CAPN12Q6ZSI9 719 aa11.17□□□□□ -0.62
PTCD3-205ENST00000464541 SEPT3Q9UH03 358 aa11.17□□□□□ -0.62
PTCD3-205ENST00000464541 BNIP3LO60238 219 aa11.16□□□□□ -0.62
PTCD3-205ENST00000464541 PDIA4P13667 645 aaKnown RBP11.16□□□□□ -0.62
PTCD3-205ENST00000464541 BRD2P25440 801 aaKnown RBP11.16□□□□□ -0.62
PTCD3-205ENST00000464541 TNP2Q05952 138 aa11.16□□□□□ -0.62
PTCD3-205ENST00000464541 NAA30Q147X3 362 aaPredicted RBP11.16□□□□□ -0.62
PTCD3-205ENST00000464541 HELQQ8TDG4 1101 aa11.16□□□□□ -0.62
PTCD3-205ENST00000464541 HSH2DQ96JZ2 352 aa11.16□□□□□ -0.62
PTCD3-205ENST00000464541 SAP130Q9H0E3 1048 aa11.16□□□□□ -0.62
PTCD3-205ENST00000464541 KLK14Q9P0G3 267 aa11.16□□□□□ -0.62
PTCD3-205ENST00000464541 EFSO43281 561 aa11.15□□□□□ -0.62
PTCD3-205ENST00000464541 BTLAQ7Z6A9 289 aa11.15□□□□□ -0.62
PTCD3-205ENST00000464541 ZNF280CQ8ND82 737 aa11.15□□□□□ -0.62
PTCD3-205ENST00000464541 KLRG1Q96E93 195 aa11.15□□□□□ -0.62
PTCD3-205ENST00000464541 IFT43Q96FT9 208 aa11.15□□□□□ -0.62
PTCD3-205ENST00000464541 BCS1LQ9Y276 419 aa11.15□□□□□ -0.62
PTCD3-205ENST00000464541 PATL2C9JE40 543 aaKnown RBP11.14□□□□□ -0.63
PTCD3-205ENST00000464541 GPR25O00155 361 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 MAPTP10636 758 aaKnown RBP11.14□□□□□ -0.63
PTCD3-205ENST00000464541 TYRO3Q06418 890 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 GAS6Q14393 721 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 FAM182BQ5T319 152 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 LCE2CQ5TA81 110 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 ABTB2Q8N961 1025 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 ABHD17AQ96GS6 310 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 CEP63Q96MT8 703 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 COL25A1Q9BXS0 654 aaPredicted RBP11.14□□□□□ -0.63
PTCD3-205ENST00000464541 STIM2Q9P246 746 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 EGFL7Q9UHF1 273 aa11.14□□□□□ -0.63
PTCD3-205ENST00000464541 DMGDHQ9UI17 866 aaKnown RBP11.14□□□□□ -0.63
PTCD3-205ENST00000464541 NSFL1CQ9UNZ2 370 aaKnown RBP11.14□□□□□ -0.63
PTCD3-205ENST00000464541 TNFRSF10BO14763 440 aa11.13□□□□□ -0.63
PTCD3-205ENST00000464541 KHNYNO15037 678 aaKnown RBP11.13□□□□□ -0.63
PTCD3-205ENST00000464541 FGFR3P22607 806 aa11.13□□□□□ -0.63
PTCD3-205ENST00000464541 GMPRP36959 345 aa11.13□□□□□ -0.63
PTCD3-205ENST00000464541 KCNQ4P56696 695 aa11.13□□□□□ -0.63
PTCD3-205ENST00000464541 TXNDC2Q86VQ3 553 aa11.13□□□□□ -0.63
PTCD3-205ENST00000464541 CCER1Q8TC90 406 aaPredicted RBP11.13□□□□□ -0.63
PTCD3-205ENST00000464541 GTF3C2Q8WUA4 911 aaPredicted RBP11.13□□□□□ -0.63
PTCD3-205ENST00000464541 MBIPQ9NS73 344 aa11.13□□□□□ -0.63
PTCD3-205ENST00000464541 DCDC2BA2VCK2 349 aa11.12□□□□□ -0.63
PTCD3-205ENST00000464541 WIPF1O43516 503 aa11.12□□□□□ -0.63
PTCD3-205ENST00000464541 KCNA1Q09470 495 aa11.12□□□□□ -0.63
PTCD3-205ENST00000464541 SF3B2Q13435 895 aaKnown RBP11.12□□□□□ -0.63
PTCD3-205ENST00000464541 GNEQ9Y223 722 aaKnown RBP11.12□□□□□ -0.63
PTCD3-205ENST00000464541 MICAL2O94851 1124 aa11.11□□□□□ -0.63
PTCD3-205ENST00000464541 EPB42P16452 691 aa11.11□□□□□ -0.63
PTCD3-205ENST00000464541 MX2P20592 715 aa11.11□□□□□ -0.63
PTCD3-205ENST00000464541 SCNN1AP37088 669 aa11.11□□□□□ -0.63
PTCD3-205ENST00000464541 BRD7Q9NPI1 651 aa11.11□□□□□ -0.63
PTCD3-205ENST00000464541 C11orf16Q9NQ32 467 aa11.11□□□□□ -0.63
PTCD3-205ENST00000464541 MARK1Q9P0L2 795 aa11.11□□□□□ -0.63
PTCD3-205ENST00000464541 HOMEZQ8IX15 550 aa11.1□□□□□ -0.63
PTCD3-205ENST00000464541 INPP5BP32019 993 aa11.09□□□□□ -0.63
PTCD3-205ENST00000464541 MAP2K3P46734 347 aa11.09□□□□□ -0.63
PTCD3-205ENST00000464541 IDH3AP50213 366 aa11.09□□□□□ -0.63
PTCD3-205ENST00000464541 ARSDP51689 593 aa11.09□□□□□ -0.63
PTCD3-205ENST00000464541 SRSF11Q05519 484 aaKnown RBP11.09□□□□□ -0.63
PTCD3-205ENST00000464541 RNFT1Q5M7Z0 435 aa11.09□□□□□ -0.63
PTCD3-205ENST00000464541 TREML1Q86YW5 311 aa11.09□□□□□ -0.63
PTCD3-205ENST00000464541 FAM13BQ9NYF5 915 aa11.09□□□□□ -0.63
PTCD3-205ENST00000464541 KCNH4Q9UQ05 1017 aa11.09□□□□□ -0.63
PTCD3-205ENST00000464541 DNMT3AQ9Y6K1 912 aaPredicted RBP11.09□□□□□ -0.63
PTCD3-205ENST00000464541 NPR3P17342 541 aa11.08□□□□□ -0.64
PTCD3-205ENST00000464541 KRT76Q01546 638 aa11.08□□□□□ -0.64
PTCD3-205ENST00000464541 ETFBKMTQ8IXQ9 262 aa11.08□□□□□ -0.64
PTCD3-205ENST00000464541 FKBP4Q02790 459 aaKnown RBP eCLIP11.07□□□□□ -0.64
PTCD3-205ENST00000464541 KCTD17Q8N5Z5 321 aa11.07□□□□□ -0.64
PTCD3-205ENST00000464541 CNTNAP3BQ96NU0 1288 aa11.07□□□□□ -0.64
PTCD3-205ENST00000464541 CNTNAP3Q9BZ76 1288 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms