RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ATP8B2P98198 1209 aa15□□□□□ -0.01
HDAC4-208ENST00000463007 KIAA2012Q0VF49 1180 aa15□□□□□ -0.01
HDAC4-208ENST00000463007 LRRCC1Q9C099 1032 aa15□□□□□ -0.01
HDAC4-208ENST00000463007 LRRFIP2Q9Y608 721 aaKnown RBP15□□□□□ -0.01
HDAC4-208ENST00000463007 GLI3P10071 1580 aa15□□□□□ -0.01
HDAC4-208ENST00000463007 SPG7Q9UQ90 795 aa14.99□□□□□ -0.01
HDAC4-208ENST00000463007 ZNF500O60304 480 aaPredicted RBP14.99□□□□□ -0.01
HDAC4-208ENST00000463007 MBD3O95983 291 aa14.99□□□□□ -0.01
HDAC4-208ENST00000463007 GNAI3P08754 354 aa14.99□□□□□ -0.01
HDAC4-208ENST00000463007 EIF2S2P20042 333 aaKnown RBP14.99□□□□□ -0.01
HDAC4-208ENST00000463007 CBX1P83916 185 aa14.99□□□□□ -0.01
HDAC4-208ENST00000463007 GIMAP6Q6P9H5 292 aa14.99□□□□□ -0.01
HDAC4-208ENST00000463007 AXIN2Q9Y2T1 843 aa14.99□□□□□ -0.01
HDAC4-208ENST00000463007 IGSF3O75054 1194 aa14.99□□□□□ -0.01
HDAC4-208ENST00000463007 PHAXQ9H814 394 aaKnown RBP14.99□□□□□ -0.01
HDAC4-208ENST00000463007 MRC1P22897 1456 aa14.98□□□□□ -0.01
HDAC4-208ENST00000463007 ADCY9O60503 1353 aa14.98□□□□□ -0.01
HDAC4-208ENST00000463007 KCNQ3O43525 872 aa14.98□□□□□ -0.01
HDAC4-208ENST00000463007 ADCY5O95622 1261 aa14.98□□□□□ -0.01
HDAC4-208ENST00000463007 CWC27Q6UX04 472 aaKnown RBP14.98□□□□□ -0.01
HDAC4-208ENST00000463007 PLEKHG2Q9H7P9 1386 aa14.98□□□□□ -0.01
HDAC4-208ENST00000463007 A0A0U1RQG5 324 aaPredicted RBP14.97□□□□□ -0.01
HDAC4-208ENST00000463007 BRD1O95696 1058 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 HDGFL1Q5TGJ6 251 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 VPS37CA5D8V6 355 aaPredicted RBP14.97□□□□□ -0.01
HDAC4-208ENST00000463007 SURF6O75683 361 aaKnown RBP14.97□□□□□ -0.01
HDAC4-208ENST00000463007 CHMLP26374 656 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 POLA2Q14181 598 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 C14orf37Q86TY3 774 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 SSH3Q8TE77 659 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 SYAP1Q96A49 352 aaPredicted RBP14.97□□□□□ -0.01
HDAC4-208ENST00000463007 STAP2Q9UGK3 403 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 PARP4Q9UKK3 1724 aaKnown RBP14.97□□□□□ -0.01
HDAC4-208ENST00000463007 CSPP1Q1MSJ5 1256 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 AMOTQ4VCS5 1084 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 FERMT3Q86UX7 667 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 SRCIN1Q9C0H9 1055 aa14.97□□□□□ -0.01
HDAC4-208ENST00000463007 SPDYE4A6NLX3 237 aa14.96□□□□□ -0.01
HDAC4-208ENST00000463007 SASS6Q6UVJ0 657 aa14.96□□□□□ -0.01
HDAC4-208ENST00000463007 RNMTO43148 476 aaKnown RBP14.96□□□□□ -0.01
HDAC4-208ENST00000463007 ANXA1P04083 346 aa14.96□□□□□ -0.01
HDAC4-208ENST00000463007 OS9Q13438 667 aaPredicted RBP14.96□□□□□ -0.01
HDAC4-208ENST00000463007 CAMK4Q16566 473 aa14.96□□□□□ -0.01
HDAC4-208ENST00000463007 ERBB3P21860 1342 aa14.96□□□□□ -0.01
HDAC4-208ENST00000463007 BEND3Q5T5X7 828 aa14.95□□□□□ -0.02
HDAC4-208ENST00000463007 FAM173BQ6P4H8 233 aa14.95□□□□□ -0.02
HDAC4-208ENST00000463007 ANKRD24Q8TF21 1146 aa14.95□□□□□ -0.02
HDAC4-208ENST00000463007 IL17RAQ96F46 866 aa14.95□□□□□ -0.02
HDAC4-208ENST00000463007 KDM6AO15550 1401 aaPredicted RBP14.95□□□□□ -0.02
HDAC4-208ENST00000463007 TCEANC2Q96MN5 208 aa14.95□□□□□ -0.02
HDAC4-208ENST00000463007 C19orf44Q9H6X5 657 aa14.95□□□□□ -0.02
HDAC4-208ENST00000463007 PLEKHO1Q53GL0 409 aaPredicted RBP14.94□□□□□ -0.02
HDAC4-208ENST00000463007 ZNF530Q6P9A1 599 aaPredicted RBP14.94□□□□□ -0.02
HDAC4-208ENST00000463007 CHPF2Q9P2E5 772 aa14.94□□□□□ -0.02
HDAC4-208ENST00000463007 AOX1Q06278 1338 aa14.94□□□□□ -0.02
HDAC4-208ENST00000463007 KRT28Q7Z3Y7 464 aa14.94□□□□□ -0.02
HDAC4-208ENST00000463007 CCDC83Q8IWF9 413 aa14.94□□□□□ -0.02
HDAC4-208ENST00000463007 HS1BP3Q53T59 392 aa14.93□□□□□ -0.02
HDAC4-208ENST00000463007 NOLC1Q14978 699 aaKnown RBP eCLIP14.93□□□□□ -0.02
HDAC4-208ENST00000463007 MEGF6O75095 1541 aa14.93□□□□□ -0.02
HDAC4-208ENST00000463007 MPRIPQ6WCQ1 1025 aa14.92□□□□□ -0.02
HDAC4-208ENST00000463007 RASEFQ8IZ41 740 aa14.92□□□□□ -0.02
HDAC4-208ENST00000463007 NECAB1Q8N987 351 aa14.92□□□□□ -0.02
HDAC4-208ENST00000463007 SMC3Q9UQE7 1217 aa14.92□□□□□ -0.02
HDAC4-208ENST00000463007 DYNC1I1O14576 645 aa14.92□□□□□ -0.02
HDAC4-208ENST00000463007 CASTP20810 708 aaKnown RBP14.92□□□□□ -0.02
HDAC4-208ENST00000463007 KCNJ4P48050 445 aa14.92□□□□□ -0.02
HDAC4-208ENST00000463007 DNM1Q05193 864 aaKnown RBP14.92□□□□□ -0.02
HDAC4-208ENST00000463007 BTBD11A6QL63 1104 aa14.91□□□□□ -0.02
HDAC4-208ENST00000463007 GIGYF1O75420 1035 aaPredicted RBP14.91□□□□□ -0.02
HDAC4-208ENST00000463007 WDR33Q9C0J8 1336 aaKnown RBP14.91□□□□□ -0.02
HDAC4-208ENST00000463007 UBTFL1P0CB47 393 aaPredicted RBP14.91□□□□□ -0.02
HDAC4-208ENST00000463007 AK2P54819 239 aa14.91□□□□□ -0.02
HDAC4-208ENST00000463007 MTX1Q13505 466 aa14.91□□□□□ -0.02
HDAC4-208ENST00000463007 DRC7Q8IY82 874 aa14.91□□□□□ -0.02
HDAC4-208ENST00000463007 TAOK2Q9UL54 1235 aa14.91□□□□□ -0.02
HDAC4-208ENST00000463007 TMEM94Q12767 1356 aa14.91□□□□□ -0.02
HDAC4-208ENST00000463007 PHF14O94880 888 aa14.91□□□□□ -0.02
HDAC4-208ENST00000463007 PROSER2Q86WR7 435 aaPredicted RBP14.91□□□□□ -0.02
HDAC4-208ENST00000463007 LAMB4A4D0S4 1761 aa14.9□□□□□ -0.02
HDAC4-208ENST00000463007 LARGE1O95461 756 aa14.9□□□□□ -0.02
HDAC4-208ENST00000463007 NBPF7P0C2Y1 421 aaPredicted RBP14.9□□□□□ -0.02
HDAC4-208ENST00000463007 SYT1P21579 422 aa14.9□□□□□ -0.02
HDAC4-208ENST00000463007 SRGAP3O43295 1099 aa14.9□□□□□ -0.02
HDAC4-208ENST00000463007 FOSBP53539 338 aa14.9□□□□□ -0.02
HDAC4-208ENST00000463007 CKAP2LQ8IYA6 745 aa14.9□□□□□ -0.02
HDAC4-208ENST00000463007 DNAAF4Q8WXU2 420 aa14.9□□□□□ -0.02
HDAC4-208ENST00000463007 PPFIA3O75145 1194 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 TNS3Q68CZ2 1445 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 USP42Q9H9J4 1324 aaKnown RBP14.89□□□□□ -0.03
HDAC4-208ENST00000463007 ABCA3Q99758 1704 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 PPP4R3BQ5MIZ7 849 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 PPP1R42Q7Z4L9 355 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 PI4KAP2A4QPH2 592 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 STX6O43752 255 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 MCM2P49736 904 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 PDIA6Q15084 440 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 PROSER3Q2NL68 480 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 PI4KAP1Q8N8J0 262 aa14.89□□□□□ -0.03
HDAC4-208ENST00000463007 UTYO14607 1347 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms