RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 COPS6Q7L5N1 327 aa9.88□□□□□ -0.83
USP4-207ENST00000462673 NECTIN2Q92692 538 aa9.88□□□□□ -0.83
USP4-207ENST00000462673 CHPF2Q9P2E5 772 aa9.88□□□□□ -0.83
USP4-207ENST00000462673 PDZRN3Q9UPQ7 1066 aa9.88□□□□□ -0.83
USP4-207ENST00000462673 TAF1LQ8IZX4 1826 aa9.88□□□□□ -0.83
USP4-207ENST00000462673 CICQ96RK0 1608 aaPredicted RBP9.88□□□□□ -0.83
USP4-207ENST00000462673 KDM3BQ7LBC6 1761 aa9.88□□□□□ -0.83
USP4-207ENST00000462673 NBPF26B4DH59 902 aa9.87□□□□□ -0.83
USP4-207ENST00000462673 NEXNQ0ZGT2 675 aa9.87□□□□□ -0.83
USP4-207ENST00000462673 AIMP1Q12904 312 aaKnown RBP9.87□□□□□ -0.83
USP4-207ENST00000462673 ALDH1L2Q3SY69 923 aa9.87□□□□□ -0.83
USP4-207ENST00000462673 NBPF10Q6P3W6 841 aaKnown RBP9.87□□□□□ -0.83
USP4-207ENST00000462673 PPP1R42Q7Z4L9 355 aa9.87□□□□□ -0.83
USP4-207ENST00000462673 RIC3Q7Z5B4 369 aa9.87□□□□□ -0.83
USP4-207ENST00000462673 TRMT2AQ8IZ69 625 aaKnown RBP9.87□□□□□ -0.83
USP4-207ENST00000462673 NBPF15Q8N660 670 aa9.87□□□□□ -0.83
USP4-207ENST00000462673 PLBD2Q8NHP8 589 aa9.87□□□□□ -0.83
USP4-207ENST00000462673 NYXQ9GZU5 481 aa9.87□□□□□ -0.83
USP4-207ENST00000462673 MAP3K15Q6ZN16 1313 aa9.86□□□□□ -0.83
USP4-207ENST00000462673 IPO8O15397 1037 aaKnown RBP9.86□□□□□ -0.83
USP4-207ENST00000462673 MMP10P09238 476 aa9.86□□□□□ -0.83
USP4-207ENST00000462673 COL5A3P25940 1745 aaPredicted RBP9.86□□□□□ -0.83
USP4-207ENST00000462673 QSER1Q2KHR3 1735 aa9.86□□□□□ -0.83
USP4-207ENST00000462673 KRT24Q2M2I5 525 aa9.86□□□□□ -0.83
USP4-207ENST00000462673 PARP10Q53GL7 1025 aa9.86□□□□□ -0.83
USP4-207ENST00000462673 GIGYF2Q6Y7W6 1299 aaKnown RBP9.86□□□□□ -0.83
USP4-207ENST00000462673 TSPYL6Q8N831 410 aa9.86□□□□□ -0.83
USP4-207ENST00000462673 IPO9Q96P70 1041 aaKnown RBP9.86□□□□□ -0.83
USP4-207ENST00000462673 CD2APQ9Y5K6 639 aa9.86□□□□□ -0.83
USP4-207ENST00000462673 CAMTA2O94983 1202 aa9.85□□□□□ -0.83
USP4-207ENST00000462673 TM4SF1P30408 202 aa9.85□□□□□ -0.83
USP4-207ENST00000462673 ST5P78524 1137 aa9.85□□□□□ -0.83
USP4-207ENST00000462673 PDIA6Q15084 440 aa9.85□□□□□ -0.83
USP4-207ENST00000462673 XAGE3Q8WTP9 111 aa9.85□□□□□ -0.83
USP4-207ENST00000462673 CDCA7LQ96GN5 454 aa9.85□□□□□ -0.83
USP4-207ENST00000462673 CCDC136Q96JN2 1154 aa9.85□□□□□ -0.83
USP4-207ENST00000462673 SPINK5Q9NQ38 1064 aaPredicted RBP9.85□□□□□ -0.83
USP4-207ENST00000462673 NIP7Q9Y221 180 aaKnown RBP eCLIP9.85□□□□□ -0.83
USP4-207ENST00000462673 SERPINB2P05120 415 aa9.84□□□□□ -0.83
USP4-207ENST00000462673 PIP4K2AP48426 406 aaPredicted RBP9.84□□□□□ -0.83
USP4-207ENST00000462673 TGFB2P61812 414 aa9.84□□□□□ -0.83
USP4-207ENST00000462673 FKBP5Q13451 457 aaPredicted RBP9.84□□□□□ -0.83
USP4-207ENST00000462673 TCIRG1Q13488 830 aa9.84□□□□□ -0.83
USP4-207ENST00000462673 MSL1Q68DK7 614 aa9.84□□□□□ -0.83
USP4-207ENST00000462673 KSR2Q6VAB6 950 aa9.84□□□□□ -0.83
USP4-207ENST00000462673 BICDL1Q6ZP65 573 aa9.84□□□□□ -0.83
USP4-207ENST00000462673 PDGFDQ9GZP0 370 aaPredicted RBP9.84□□□□□ -0.83
USP4-207ENST00000462673 ZBTB3Q9H5J0 574 aa9.84□□□□□ -0.83
USP4-207ENST00000462673 SRP68Q9UHB9 627 aaKnown RBP9.84□□□□□ -0.83
USP4-207ENST00000462673 TJP1Q07157 1748 aa9.84□□□□□ -0.83
USP4-207ENST00000462673 PDE6BP35913 854 aa9.83□□□□□ -0.84
USP4-207ENST00000462673 PTGER2P43116 358 aa9.83□□□□□ -0.84
USP4-207ENST00000462673 NBR1Q14596 966 aa9.83□□□□□ -0.84
USP4-207ENST00000462673 NFIXQ14938 502 aa9.83□□□□□ -0.84
USP4-207ENST00000462673 NBPF5PQ86XG9 351 aaPredicted RBP9.83□□□□□ -0.84
USP4-207ENST00000462673 HDAC5Q9UQL6 1122 aa9.83□□□□□ -0.84
USP4-207ENST00000462673 CARMIL3Q8ND23 1372 aa9.83□□□□□ -0.84
USP4-207ENST00000462673 UBR3Q6ZT12 1888 aa9.83□□□□□ -0.84
USP4-207ENST00000462673 PTPRCP08575 1304 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 MS4A1P11836 297 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 FLIIQ13045 1269 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 TRIM28Q13263 835 aaKnown RBP9.82□□□□□ -0.84
USP4-207ENST00000462673 TBC1D9BQ66K14 1250 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 TTLL7Q6ZT98 887 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 SMIM5Q71RC9 77 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 AMIGO3Q86WK7 504 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 KLHL34Q8N239 644 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 CNBD1Q8NA66 436 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 SGIP1Q9BQI5 828 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 UTP14AQ9BVJ6 771 aaKnown RBP9.82□□□□□ -0.84
USP4-207ENST00000462673 BRIP1Q9BX63 1249 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 SMC4Q9NTJ3 1288 aa9.82□□□□□ -0.84
USP4-207ENST00000462673 ZBTB47Q9UFB7 747 aaPredicted RBP9.82□□□□□ -0.84
USP4-207ENST00000462673 MYH14Q7Z406 1995 aaKnown RBP9.82□□□□□ -0.84
USP4-207ENST00000462673 LAMB4A4D0S4 1761 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 PI4KAP2A4QPH2 592 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 H0YIN7 160 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 POLRMTO00411 1230 aaKnown RBP9.81□□□□□ -0.84
USP4-207ENST00000462673 ANXA1P04083 346 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 BRPF1P55201 1214 aaPredicted RBP9.81□□□□□ -0.84
USP4-207ENST00000462673 HLFQ16534 295 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 PROSER3Q2NL68 480 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 LRP10Q7Z4F1 713 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 ZNF34Q8IZ26 560 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 PI4KAP1Q8N8J0 262 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 CCDC191Q8NCU4 936 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 ARHGAP45Q92619 1136 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 METTL22Q9BUU2 404 aaPredicted RBP9.81□□□□□ -0.84
USP4-207ENST00000462673 TMX4Q9H1E5 349 aaPredicted RBP9.81□□□□□ -0.84
USP4-207ENST00000462673 PHAXQ9H814 394 aaKnown RBP9.81□□□□□ -0.84
USP4-207ENST00000462673 BCL2L12Q9HB09 334 aa9.81□□□□□ -0.84
USP4-207ENST00000462673 PRKCSHP14314 528 aaPredicted RBP9.8□□□□□ -0.84
USP4-207ENST00000462673 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.8□□□□□ -0.84
USP4-207ENST00000462673 DNAAF4Q8WXU2 420 aa9.8□□□□□ -0.84
USP4-207ENST00000462673 NLRP3Q96P20 1036 aa9.8□□□□□ -0.84
USP4-207ENST00000462673 SYT17Q9BSW7 474 aa9.8□□□□□ -0.84
USP4-207ENST00000462673 API5Q9BZZ5 524 aaKnown RBP9.8□□□□□ -0.84
USP4-207ENST00000462673 TRMT112Q9UI30 125 aaKnown RBP9.8□□□□□ -0.84
USP4-207ENST00000462673 MAP3K2Q9Y2U5 619 aa9.8□□□□□ -0.84
USP4-207ENST00000462673 KIF16BQ96L93 1317 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms