RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 NPC1L1Q9UHC9 1359 aa11.75□□□□□ -0.53
HDAC9-220ENST00000461409 RIMBP2O15034 1052 aa11.74□□□□□ -0.53
HDAC9-220ENST00000461409 DIAPH1O60610 1272 aaKnown RBP11.74□□□□□ -0.53
HDAC9-220ENST00000461409 GIGYF1O75420 1035 aaPredicted RBP11.74□□□□□ -0.53
HDAC9-220ENST00000461409 C1QTNF8P60827 252 aa11.74□□□□□ -0.53
HDAC9-220ENST00000461409 CC2D1BQ5T0F9 858 aaKnown RBP11.74□□□□□ -0.53
HDAC9-220ENST00000461409 ARHGEF1Q92888 912 aaKnown RBP11.73□□□□□ -0.53
HDAC9-220ENST00000461409 COL5A3P25940 1745 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-220ENST00000461409 HMOX1P09601 288 aa11.72□□□□□ -0.53
HDAC9-220ENST00000461409 HOXB1P14653 301 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-220ENST00000461409 CRKLP46109 303 aaKnown RBP11.72□□□□□ -0.53
HDAC9-220ENST00000461409 SLC52A2Q9HAB3 445 aa11.72□□□□□ -0.53
HDAC9-220ENST00000461409 CCDC87Q9NVE4 849 aa11.72□□□□□ -0.53
HDAC9-220ENST00000461409 GYS1P13807 737 aa11.71□□□□□ -0.53
HDAC9-220ENST00000461409 TGFB2P61812 414 aa11.71□□□□□ -0.53
HDAC9-220ENST00000461409 PARP3Q9Y6F1 533 aa11.71□□□□□ -0.53
HDAC9-220ENST00000461409 CICQ96RK0 1608 aaPredicted RBP11.71□□□□□ -0.54
HDAC9-220ENST00000461409 MRC1P22897 1456 aa11.7□□□□□ -0.54
HDAC9-220ENST00000461409 C10orf71Q711Q0 1435 aa11.7□□□□□ -0.54
HDAC9-220ENST00000461409 ATP10DQ9P241 1426 aa11.7□□□□□ -0.54
HDAC9-220ENST00000461409 SCN11AQ9UI33 1791 aa11.7□□□□□ -0.54
HDAC9-220ENST00000461409 TMC2Q8TDI7 906 aa11.7□□□□□ -0.54
HDAC9-220ENST00000461409 ZSWIM6Q9HCJ5 1215 aa11.7□□□□□ -0.54
HDAC9-220ENST00000461409 PXDNLA1KZ92 1463 aa11.7□□□□□ -0.54
HDAC9-220ENST00000461409 USP42Q9H9J4 1324 aaKnown RBP11.69□□□□□ -0.54
HDAC9-220ENST00000461409 RNMTO43148 476 aaKnown RBP11.69□□□□□ -0.54
HDAC9-220ENST00000461409 MTHFSDQ2M296 383 aaKnown RBP11.69□□□□□ -0.54
HDAC9-220ENST00000461409 LGR6Q9HBX8 967 aa11.69□□□□□ -0.54
HDAC9-220ENST00000461409 WWC3Q9ULE0 1092 aa11.69□□□□□ -0.54
HDAC9-220ENST00000461409 ADCY9O60503 1353 aa11.68□□□□□ -0.54
HDAC9-220ENST00000461409 SENP3-EIF4A1A0A087X0R7 540 aa11.68□□□□□ -0.54
HDAC9-220ENST00000461409 U2SURPO15042 1029 aaKnown RBP11.68□□□□□ -0.54
HDAC9-220ENST00000461409 INTS5Q6P9B9 1019 aaKnown RBP11.68□□□□□ -0.54
HDAC9-220ENST00000461409 VSIG10Q8N0Z9 540 aa11.68□□□□□ -0.54
HDAC9-220ENST00000461409 GPBP1L1Q9HC44 474 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-220ENST00000461409 C4AP0C0L4 1744 aa11.68□□□□□ -0.54
HDAC9-220ENST00000461409 KIF13BQ9NQT8 1826 aa11.67□□□□□ -0.54
HDAC9-220ENST00000461409 TJP1Q07157 1748 aa11.67□□□□□ -0.54
HDAC9-220ENST00000461409 A0A0G2JLW4 131 aa11.67□□□□□ -0.54
HDAC9-220ENST00000461409 ZPR1O75312 459 aa11.67□□□□□ -0.54
HDAC9-220ENST00000461409 DNAJC10Q8IXB1 793 aa11.67□□□□□ -0.54
HDAC9-220ENST00000461409 GAS2L2Q8NHY3 880 aa11.67□□□□□ -0.54
HDAC9-220ENST00000461409 CFAP53Q96M91 514 aa11.67□□□□□ -0.54
HDAC9-220ENST00000461409 SRP68Q9UHB9 627 aaKnown RBP11.67□□□□□ -0.54
HDAC9-220ENST00000461409 COL3A1P02461 1466 aaPredicted RBP11.67□□□□□ -0.54
HDAC9-220ENST00000461409 MYH14Q7Z406 1995 aaKnown RBP11.67□□□□□ -0.54
HDAC9-220ENST00000461409 SOS1Q07889 1333 aaPredicted RBP11.66□□□□□ -0.54
HDAC9-220ENST00000461409 CYP19A1P11511 503 aaPredicted RBP11.66□□□□□ -0.54
HDAC9-220ENST00000461409 SLC39A6Q13433 755 aa11.66□□□□□ -0.54
HDAC9-220ENST00000461409 CNGB1Q14028 1251 aaPredicted RBP11.66□□□□□ -0.54
HDAC9-220ENST00000461409 GPR153Q6NV75 609 aa11.66□□□□□ -0.54
HDAC9-220ENST00000461409 TTC5Q8N0Z6 440 aa11.66□□□□□ -0.54
HDAC9-220ENST00000461409 BCS1LQ9Y276 419 aa11.66□□□□□ -0.54
HDAC9-220ENST00000461409 KCPQ6ZWJ8 1503 aa11.65□□□□□ -0.54
HDAC9-220ENST00000461409 ADAMTS7Q9UKP4 1686 aa11.65□□□□□ -0.54
HDAC9-220ENST00000461409 GNAT3A8MTJ3 354 aa11.65□□□□□ -0.54
HDAC9-220ENST00000461409 STARD3NLO95772 234 aa11.65□□□□□ -0.54
HDAC9-220ENST00000461409 DPEP1P16444 411 aa11.65□□□□□ -0.54
HDAC9-220ENST00000461409 TEFQ10587 303 aa11.65□□□□□ -0.54
HDAC9-220ENST00000461409 BBXQ8WY36 941 aaPredicted RBP11.65□□□□□ -0.54
HDAC9-220ENST00000461409 GPHNQ9NQX3 736 aaPredicted RBP11.65□□□□□ -0.54
HDAC9-220ENST00000461409 CEP350Q5VT06 3117 aa11.65□□□□□ -0.54
HDAC9-220ENST00000461409 FCHSD2O94868 740 aa11.64□□□□□ -0.55
HDAC9-220ENST00000461409 DDR1Q08345 913 aa11.64□□□□□ -0.55
HDAC9-220ENST00000461409 ZNF526Q8TF50 670 aaPredicted RBP11.64□□□□□ -0.55
HDAC9-220ENST00000461409 PIM2Q9P1W9 311 aa11.64□□□□□ -0.55
HDAC9-220ENST00000461409 NUDCQ9Y266 331 aa11.64□□□□□ -0.55
HDAC9-220ENST00000461409 COL15A1P39059 1388 aa11.64□□□□□ -0.55
HDAC9-220ENST00000461409 POLRMTO00411 1230 aaKnown RBP11.63□□□□□ -0.55
HDAC9-220ENST00000461409 USPL1Q5W0Q7 1092 aa11.63□□□□□ -0.55
HDAC9-220ENST00000461409 ARHGAP27Q6ZUM4 889 aa11.63□□□□□ -0.55
HDAC9-220ENST00000461409 TEX13AQ9BXU3 409 aaPredicted RBP11.63□□□□□ -0.55
HDAC9-220ENST00000461409 NARFQ9UHQ1 456 aa11.63□□□□□ -0.55
HDAC9-220ENST00000461409 ZBTB1Q9Y2K1 713 aa11.63□□□□□ -0.55
HDAC9-220ENST00000461409 KIAA1551Q9HCM1 1747 aa11.63□□□□□ -0.55
HDAC9-220ENST00000461409 SLC34A2O95436 690 aa11.62□□□□□ -0.55
HDAC9-220ENST00000461409 TM4SF1P30408 202 aa11.62□□□□□ -0.55
HDAC9-220ENST00000461409 FOXK1P85037 733 aa11.62□□□□□ -0.55
HDAC9-220ENST00000461409 DALRD3Q5D0E6 543 aaKnown RBP11.62□□□□□ -0.55
HDAC9-220ENST00000461409 ZNF790Q6PG37 636 aa11.62□□□□□ -0.55
HDAC9-220ENST00000461409 IL17REQ8NFR9 667 aa11.62□□□□□ -0.55
HDAC9-220ENST00000461409 CRISPLD2Q9H0B8 497 aa11.62□□□□□ -0.55
HDAC9-220ENST00000461409 N4BP2Q86UW6 1770 aaPredicted RBP11.62□□□□□ -0.55
HDAC9-220ENST00000461409 A0A087WZG4 1122 aa11.61□□□□□ -0.55
HDAC9-220ENST00000461409 KCNA3P22001 575 aa11.61□□□□□ -0.55
HDAC9-220ENST00000461409 CANXP27824 592 aaKnown RBP11.61□□□□□ -0.55
HDAC9-220ENST00000461409 PRKAR2BP31323 418 aa11.61□□□□□ -0.55
HDAC9-220ENST00000461409 VARS2Q5ST30 1063 aaKnown RBP11.61□□□□□ -0.55
HDAC9-220ENST00000461409 FMNL2Q96PY5 1086 aa11.61□□□□□ -0.55
HDAC9-220ENST00000461409 RSPH6AQ9H0K4 717 aa11.61□□□□□ -0.55
HDAC9-220ENST00000461409 CEMIPQ8WUJ3 1361 aa11.61□□□□□ -0.55
HDAC9-220ENST00000461409 UBR2Q8IWV8 1755 aa11.61□□□□□ -0.55
HDAC9-220ENST00000461409 HEG1Q9ULI3 1381 aa11.6□□□□□ -0.55
HDAC9-220ENST00000461409 U2AF1L5P0DN76 240 aaPredicted RBP11.6□□□□□ -0.55
HDAC9-220ENST00000461409 PPP2R1AP30153 589 aa11.6□□□□□ -0.55
HDAC9-220ENST00000461409 U2AF1Q01081 240 aaKnown RBP eCLIP11.6□□□□□ -0.55
HDAC9-220ENST00000461409 NFIXQ14938 502 aa11.6□□□□□ -0.55
HDAC9-220ENST00000461409 NPM2Q86SE8 214 aaKnown RBP11.6□□□□□ -0.55
HDAC9-220ENST00000461409 ZNF496Q96IT1 587 aaPredicted RBP11.6□□□□□ -0.55
HDAC9-220ENST00000461409 VIRMAQ69YN4 1812 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms