RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 FAM182BQ5T319 152 aa10.35□□□□□ -0.75
HDAC9-219ENST00000461159 MEX3CQ5U5Q3 659 aaKnown RBP10.35□□□□□ -0.75
HDAC9-219ENST00000461159 C22orf23Q9BZE7 217 aa10.35□□□□□ -0.75
HDAC9-219ENST00000461159 JCADQ9P266 1359 aa10.35□□□□□ -0.75
HDAC9-219ENST00000461159 ISY1Q9ULR0 285 aaKnown RBP10.35□□□□□ -0.75
HDAC9-219ENST00000461159 DDX11L8A8MPP1 907 aa10.35□□□□□ -0.75
HDAC9-219ENST00000461159 TRAK2O60296 914 aa10.35□□□□□ -0.75
HDAC9-219ENST00000461159 PTCD1O75127 700 aaKnown RBP10.35□□□□□ -0.75
HDAC9-219ENST00000461159 BRPF1P55201 1214 aaPredicted RBP10.35□□□□□ -0.75
HDAC9-219ENST00000461159 IRX5P78411 483 aaPredicted RBP10.35□□□□□ -0.75
HDAC9-219ENST00000461159 DCAF5Q96JK2 942 aa10.35□□□□□ -0.75
HDAC9-219ENST00000461159 HDGFL1Q5TGJ6 251 aa10.34□□□□□ -0.75
HDAC9-219ENST00000461159 HSCBQ8IWL3 235 aa10.34□□□□□ -0.75
HDAC9-219ENST00000461159 PHAXQ9H814 394 aaKnown RBP10.34□□□□□ -0.75
HDAC9-219ENST00000461159 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.34□□□□□ -0.75
HDAC9-219ENST00000461159 PCDH11XQ9BZA7 1347 aa10.34□□□□□ -0.75
HDAC9-219ENST00000461159 PCDH11YQ9BZA8 1340 aa10.34□□□□□ -0.75
HDAC9-219ENST00000461159 ZNF790Q6PG37 636 aa10.34□□□□□ -0.75
HDAC9-219ENST00000461159 SLC4A10Q6U841 1118 aa10.34□□□□□ -0.75
HDAC9-219ENST00000461159 SPRYD3Q8NCJ5 442 aa10.34□□□□□ -0.75
HDAC9-219ENST00000461159 ZNF496Q96IT1 587 aaPredicted RBP10.34□□□□□ -0.75
HDAC9-219ENST00000461159 GZF1Q9H116 711 aaPredicted RBP10.34□□□□□ -0.75
HDAC9-219ENST00000461159 KIF16BQ96L93 1317 aa10.33□□□□□ -0.76
HDAC9-219ENST00000461159 EXOC5O00471 708 aa10.33□□□□□ -0.76
HDAC9-219ENST00000461159 ACSBG1Q96GR2 724 aa10.33□□□□□ -0.76
HDAC9-219ENST00000461159 C1orf115Q9H7X2 142 aa10.33□□□□□ -0.76
HDAC9-219ENST00000461159 LRP6O75581 1613 aa10.33□□□□□ -0.76
HDAC9-219ENST00000461159 SPATA31A1Q5TZJ5 1347 aa10.33□□□□□ -0.76
HDAC9-219ENST00000461159 MFAP1P55081 439 aaKnown RBP10.33□□□□□ -0.76
HDAC9-219ENST00000461159 PROSER3Q2NL68 480 aa10.33□□□□□ -0.76
HDAC9-219ENST00000461159 CHPF2Q9P2E5 772 aa10.33□□□□□ -0.76
HDAC9-219ENST00000461159 USP21Q9UK80 565 aa10.33□□□□□ -0.76
HDAC9-219ENST00000461159 COL22A1Q8NFW1 1626 aaPredicted RBP10.33□□□□□ -0.76
HDAC9-219ENST00000461159 UNC5CLQ8IV45 518 aa10.32□□□□□ -0.76
HDAC9-219ENST00000461159 COL14A1Q05707 1796 aaKnown RBP10.32□□□□□ -0.76
HDAC9-219ENST00000461159 ABCC6O95255 1503 aa10.32□□□□□ -0.76
HDAC9-219ENST00000461159 SRCAPQ6ZRS2 3230 aa10.32□□□□□ -0.76
HDAC9-219ENST00000461159 IPO8O15397 1037 aaKnown RBP10.32□□□□□ -0.76
HDAC9-219ENST00000461159 NPM3O75607 178 aaKnown RBP10.32□□□□□ -0.76
HDAC9-219ENST00000461159 ZNF526Q8TF50 670 aaPredicted RBP10.32□□□□□ -0.76
HDAC9-219ENST00000461159 STK31Q9BXU1 1019 aa10.32□□□□□ -0.76
HDAC9-219ENST00000461159 USP16Q9Y5T5 823 aa10.32□□□□□ -0.76
HDAC9-219ENST00000461159 RGS12O14924 1447 aa10.32□□□□□ -0.76
HDAC9-219ENST00000461159 GIGYF1O75420 1035 aaPredicted RBP10.31□□□□□ -0.76
HDAC9-219ENST00000461159 FKBP5Q13451 457 aaPredicted RBP10.31□□□□□ -0.76
HDAC9-219ENST00000461159 DDB1Q16531 1140 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 TTC5Q8N0Z6 440 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 FAM13BQ9NYF5 915 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 MYL6BP14649 208 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 AIMP1Q12904 312 aaKnown RBP10.31□□□□□ -0.76
HDAC9-219ENST00000461159 HDAC1Q13547 482 aaPredicted RBP10.31□□□□□ -0.76
HDAC9-219ENST00000461159 CCDC30Q5VVM6 783 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 PANK2Q9BZ23 570 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 TSPYL1Q9H0U9 437 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 ASAP1Q9ULH1 1129 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 SPATA31A5Q5VU36 1347 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 SPATA31A7Q8IWB4 1347 aa10.31□□□□□ -0.76
HDAC9-219ENST00000461159 PLCH1Q4KWH8 1693 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 FLIIQ13045 1269 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 CWC22Q9HCG8 908 aaKnown RBP10.3□□□□□ -0.76
HDAC9-219ENST00000461159 ZBTB40Q9NUA8 1239 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 BCL9LQ86UU0 1499 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 ABCC4O15439 1325 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 KDM3BQ7LBC6 1761 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 ZBTB7BO15156 539 aaPredicted RBP10.3□□□□□ -0.76
HDAC9-219ENST00000461159 HSP90AB1P08238 724 aaKnown RBP10.3□□□□□ -0.76
HDAC9-219ENST00000461159 PRIM1P49642 420 aaKnown RBP10.3□□□□□ -0.76
HDAC9-219ENST00000461159 PIGBQ92521 554 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 GRPEL1Q9HAV7 217 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 DDX19BQ9UMR2 479 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 SCN11AQ9UI33 1791 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 SLIT2O94813 1529 aa10.3□□□□□ -0.76
HDAC9-219ENST00000461159 IRF6O14896 467 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 MARCH10Q8NA82 808 aaPredicted RBP10.29□□□□□ -0.76
HDAC9-219ENST00000461159 BANK1Q8NDB2 785 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 ARHGAP45Q92619 1136 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 SIPA1L3O60292 1781 aaPredicted RBP10.29□□□□□ -0.76
HDAC9-219ENST00000461159 AFF2P51816 1311 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 PKD1L3Q7Z443 1732 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 ADAMTS7Q9UKP4 1686 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 OFD1O75665 1012 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 SEMA3FQ13275 785 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 NBPF9Q3BBW0 867 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.29□□□□□ -0.76
HDAC9-219ENST00000461159 TMOD3Q9NYL9 352 aa10.29□□□□□ -0.76
HDAC9-219ENST00000461159 CGNQ9P2M7 1197 aaKnown RBP10.29□□□□□ -0.76
HDAC9-219ENST00000461159 KCNQ2O43526 872 aa10.28□□□□□ -0.76
HDAC9-219ENST00000461159 PTF1AQ7RTS3 328 aa10.28□□□□□ -0.76
HDAC9-219ENST00000461159 GBP4Q96PP9 640 aa10.28□□□□□ -0.76
HDAC9-219ENST00000461159 RBM42Q9BTD8 480 aaKnown RBP10.28□□□□□ -0.76
HDAC9-219ENST00000461159 CIZ1Q9ULV3 898 aaPredicted RBP10.28□□□□□ -0.76
HDAC9-219ENST00000461159 ZNF330Q9Y3S2 320 aaPredicted RBP10.28□□□□□ -0.76
HDAC9-219ENST00000461159 SHANK3Q9BYB0 1731 aa10.28□□□□□ -0.76
HDAC9-219ENST00000461159 DYNC1I1O14576 645 aa10.28□□□□□ -0.76
HDAC9-219ENST00000461159 SATB1Q01826 763 aa10.28□□□□□ -0.76
HDAC9-219ENST00000461159 SKOR2Q2VWA4 1001 aaPredicted RBP10.28□□□□□ -0.76
HDAC9-219ENST00000461159 FNBP4Q8N3X1 1017 aaPredicted RBP10.28□□□□□ -0.76
HDAC9-219ENST00000461159 SNX21Q969T3 373 aa10.28□□□□□ -0.76
HDAC9-219ENST00000461159 EFCC1Q9HA90 598 aa10.28□□□□□ -0.76
HDAC9-219ENST00000461159 BABAM1Q9NWV8 329 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms