RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SLC4A10Q6U841 1118 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 FOXD4L4Q8WXT5 416 aaPredicted RBP10.25□□□□□ -0.77
VPS50-208ENST00000458707 ANO2Q9NQ90 1003 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 FAM13BQ9NYF5 915 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.25□□□□□ -0.77
VPS50-208ENST00000458707 PIK3C2AO00443 1686 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 PNMA6EA0A0J9YXQ4 647 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 PLEKHG3A1L390 1219 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 GADD45BO75293 160 aaPredicted RBP10.25□□□□□ -0.77
VPS50-208ENST00000458707 HSP90AB2PQ58FF8 381 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 TSHZ3Q63HK5 1081 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 USP48Q86UV5 1035 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 TSPYL4Q9UJ04 414 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 MAP3K19Q56UN5 1328 aa10.25□□□□□ -0.77
VPS50-208ENST00000458707 CEP170BQ9Y4F5 1589 aaPredicted RBP10.24□□□□□ -0.77
VPS50-208ENST00000458707 KDM3BQ7LBC6 1761 aa10.24□□□□□ -0.77
VPS50-208ENST00000458707 HTATSF1O43719 755 aaKnown RBP10.24□□□□□ -0.77
VPS50-208ENST00000458707 LETM1O95202 739 aaPredicted RBP10.24□□□□□ -0.77
VPS50-208ENST00000458707 CCDC183Q5T5S1 534 aa10.24□□□□□ -0.77
VPS50-208ENST00000458707 UTP14CQ5TAP6 766 aaKnown RBP10.24□□□□□ -0.77
VPS50-208ENST00000458707 TRIM6-TRIM34B2RNG4 842 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 FLIIQ13045 1269 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 MTHFSDQ2M296 383 aaKnown RBP10.23□□□□□ -0.77
VPS50-208ENST00000458707 UNC5CLQ8IV45 518 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 MYRIPQ8NFW9 859 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 PIBF1Q8WXW3 757 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 STK31Q9BXU1 1019 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 MIS18AQ9NYP9 233 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 SBNO1A3KN83 1393 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 FLT4P35916 1363 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 ROBO2Q9HCK4 1378 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 ACEP12821 1306 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 RAD50Q92878 1312 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 PTMAP06454 111 aaKnown RBP10.23□□□□□ -0.77
VPS50-208ENST00000458707 GTF2F1P35269 517 aaKnown RBP eCLIP10.23□□□□□ -0.77
VPS50-208ENST00000458707 SSH3Q8TE77 659 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 RTF1Q92541 710 aaKnown RBP10.23□□□□□ -0.77
VPS50-208ENST00000458707 RILPL2Q969X0 211 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 PRIMPOLQ96LW4 560 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 TTC14Q96N46 770 aa10.23□□□□□ -0.77
VPS50-208ENST00000458707 PTPRUQ92729 1446 aa10.22□□□□□ -0.77
VPS50-208ENST00000458707 IGSF1Q8N6C5 1336 aa10.22□□□□□ -0.77
VPS50-208ENST00000458707 FOXO3O43524 673 aa10.22□□□□□ -0.77
VPS50-208ENST00000458707 CCDC30Q5VVM6 783 aa10.22□□□□□ -0.77
VPS50-208ENST00000458707 FAM212AQ96EL1 285 aa10.22□□□□□ -0.77
VPS50-208ENST00000458707 UPF3BQ9BZI7 483 aaKnown RBP10.22□□□□□ -0.77
VPS50-208ENST00000458707 IL25Q9H293 177 aa10.22□□□□□ -0.77
VPS50-208ENST00000458707 MYH15Q9Y2K3 1946 aa10.22□□□□□ -0.77
VPS50-208ENST00000458707 NWD1Q149M9 1564 aa10.22□□□□□ -0.77
VPS50-208ENST00000458707 RAB11FIP3O75154 756 aa10.21□□□□□ -0.77
VPS50-208ENST00000458707 ZSCAN22P10073 491 aaPredicted RBP10.21□□□□□ -0.77
VPS50-208ENST00000458707 UBE2HP62256 183 aa10.21□□□□□ -0.77
VPS50-208ENST00000458707 HMGN5P82970 282 aaKnown RBP10.21□□□□□ -0.77
VPS50-208ENST00000458707 SECISBP2LQ93073 1101 aaKnown RBP10.21□□□□□ -0.77
VPS50-208ENST00000458707 GDPD2Q9HCC8 539 aa10.21□□□□□ -0.77
VPS50-208ENST00000458707 SPTLC3Q9NUV7 552 aa10.21□□□□□ -0.77
VPS50-208ENST00000458707 BABAM1Q9NWV8 329 aa10.21□□□□□ -0.77
VPS50-208ENST00000458707 LRRFIP2Q9Y608 721 aaKnown RBP10.21□□□□□ -0.77
VPS50-208ENST00000458707 ADAMTSL3P82987 1691 aa10.21□□□□□ -0.77
VPS50-208ENST00000458707 ADAMTS13Q76LX8 1427 aa10.21□□□□□ -0.78
VPS50-208ENST00000458707 TTC21AQ8NDW8 1320 aa10.21□□□□□ -0.78
VPS50-208ENST00000458707 SGSM2O43147 1006 aa10.21□□□□□ -0.78
VPS50-208ENST00000458707 FKBP5Q13451 457 aaPredicted RBP10.21□□□□□ -0.78
VPS50-208ENST00000458707 NOL8Q76FK4 1167 aaKnown RBP10.21□□□□□ -0.78
VPS50-208ENST00000458707 IFNL1Q8IU54 200 aa10.21□□□□□ -0.78
VPS50-208ENST00000458707 PI4K2BQ8TCG2 481 aa10.21□□□□□ -0.78
VPS50-208ENST00000458707 FUCA2Q9BTY2 467 aa10.21□□□□□ -0.78
VPS50-208ENST00000458707 USP44Q9H0E7 712 aa10.21□□□□□ -0.78
VPS50-208ENST00000458707 LTN1O94822 1766 aa10.2□□□□□ -0.78
VPS50-208ENST00000458707 MED1Q15648 1581 aaPredicted RBP10.2□□□□□ -0.78
VPS50-208ENST00000458707 HDGFP51858 240 aaKnown RBP10.2□□□□□ -0.78
VPS50-208ENST00000458707 NOLC1Q14978 699 aaKnown RBP eCLIP10.2□□□□□ -0.78
VPS50-208ENST00000458707 LSG1Q9H089 658 aaKnown RBP10.2□□□□□ -0.78
VPS50-208ENST00000458707 TMEM51Q9NW97 253 aa10.2□□□□□ -0.78
VPS50-208ENST00000458707 SNX14Q9Y5W7 946 aa10.2□□□□□ -0.78
VPS50-208ENST00000458707 MAP3K5Q99683 1374 aa10.2□□□□□ -0.78
VPS50-208ENST00000458707 USP42Q9H9J4 1324 aaKnown RBP10.19□□□□□ -0.78
VPS50-208ENST00000458707 STX6O43752 255 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 ADCY5O95622 1261 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 CCDC94Q9BW85 323 aaPredicted RBP10.19□□□□□ -0.78
VPS50-208ENST00000458707 USP25Q9UHP3 1055 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 LIMCH1Q9UPQ0 1083 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 CNPY2Q9Y2B0 182 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.19□□□□□ -0.78
VPS50-208ENST00000458707 ATP6V1DQ9Y5K8 247 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 DIP2AQ14689 1571 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 KDM4AO75164 1064 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 F13A1P00488 732 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 SYT1P21579 422 aa10.19□□□□□ -0.78
VPS50-208ENST00000458707 LMO7Q8WWI1 1683 aa10.18□□□□□ -0.78
VPS50-208ENST00000458707 UBTFL1P0CB47 393 aaPredicted RBP10.18□□□□□ -0.78
VPS50-208ENST00000458707 HCLS1P14317 486 aaPredicted RBP10.18□□□□□ -0.78
VPS50-208ENST00000458707 AK2P54819 239 aa10.18□□□□□ -0.78
VPS50-208ENST00000458707 RUFY3Q7L099 469 aa10.18□□□□□ -0.78
VPS50-208ENST00000458707 EYA1Q99502 592 aa10.18□□□□□ -0.78
VPS50-208ENST00000458707 TMEM2Q9UHN6 1383 aa10.18□□□□□ -0.78
VPS50-208ENST00000458707 GNAT3A8MTJ3 354 aa10.17□□□□□ -0.78
VPS50-208ENST00000458707 FOXD4L6Q3SYB3 417 aaPredicted RBP10.17□□□□□ -0.78
VPS50-208ENST00000458707 FOXD4L3Q6VB84 417 aaPredicted RBP10.17□□□□□ -0.78
VPS50-208ENST00000458707 C14orf37Q86TY3 774 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms