RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 IL1RAPL2Q9NP60 686 aa13.25□□□□□ -0.29
RFX3-211ENST00000458034 PXDNQ92626 1479 aa13.24□□□□□ -0.29
RFX3-211ENST00000458034 HEG1Q9ULI3 1381 aa13.24□□□□□ -0.29
RFX3-211ENST00000458034 RAD50Q92878 1312 aa13.24□□□□□ -0.29
RFX3-211ENST00000458034 NCLP19338 710 aaKnown RBP13.24□□□□□ -0.29
RFX3-211ENST00000458034 HSPA4P34932 840 aa13.24□□□□□ -0.29
RFX3-211ENST00000458034 MPRIPQ6WCQ1 1025 aa13.24□□□□□ -0.29
RFX3-211ENST00000458034 CLASRPQ8N2M8 674 aaKnown RBP13.24□□□□□ -0.29
RFX3-211ENST00000458034 PI4K2BQ8TCG2 481 aa13.24□□□□□ -0.29
RFX3-211ENST00000458034 LRRC59Q96AG4 307 aaKnown RBP13.24□□□□□ -0.29
RFX3-211ENST00000458034 C9orf78Q9NZ63 289 aaPredicted RBP13.24□□□□□ -0.29
RFX3-211ENST00000458034 SGSM2O43147 1006 aa13.23□□□□□ -0.29
RFX3-211ENST00000458034 NASPP49321 788 aaPredicted RBP13.23□□□□□ -0.29
RFX3-211ENST00000458034 RRAGDQ9NQL2 400 aaPredicted RBP13.23□□□□□ -0.29
RFX3-211ENST00000458034 HIP1O00291 1037 aa13.22□□□□□ -0.29
RFX3-211ENST00000458034 GIGYF1O75420 1035 aaPredicted RBP13.22□□□□□ -0.29
RFX3-211ENST00000458034 BRD1O95696 1058 aa13.22□□□□□ -0.29
RFX3-211ENST00000458034 NBPF7P0C2Y1 421 aaPredicted RBP13.22□□□□□ -0.29
RFX3-211ENST00000458034 CLCN1P35523 988 aa13.22□□□□□ -0.29
RFX3-211ENST00000458034 KRT28Q7Z3Y7 464 aa13.22□□□□□ -0.29
RFX3-211ENST00000458034 GAS2L3Q86XJ1 694 aa13.22□□□□□ -0.29
RFX3-211ENST00000458034 SYAP1Q96A49 352 aaPredicted RBP13.22□□□□□ -0.29
RFX3-211ENST00000458034 DIAPH3Q9NSV4 1193 aa13.22□□□□□ -0.29
RFX3-211ENST00000458034 PALD1Q9ULE6 856 aa13.22□□□□□ -0.29
RFX3-211ENST00000458034 MAP3K2Q9Y2U5 619 aa13.22□□□□□ -0.29
RFX3-211ENST00000458034 WDR33Q9C0J8 1336 aaKnown RBP13.21□□□□□ -0.29
RFX3-211ENST00000458034 KCNQ3O43525 872 aa13.21□□□□□ -0.29
RFX3-211ENST00000458034 PRPF40AO75400 957 aaKnown RBP13.21□□□□□ -0.29
RFX3-211ENST00000458034 IFIT2P09913 472 aaKnown RBP13.21□□□□□ -0.29
RFX3-211ENST00000458034 ZSCAN23Q3MJ62 389 aa13.21□□□□□ -0.29
RFX3-211ENST00000458034 CAVIN1Q6NZI2 390 aaKnown RBP13.21□□□□□ -0.29
RFX3-211ENST00000458034 UNC5CLQ8IV45 518 aa13.21□□□□□ -0.29
RFX3-211ENST00000458034 LINS1Q8NG48 757 aa13.21□□□□□ -0.29
RFX3-211ENST00000458034 PPP1R9BQ96SB3 815 aa13.21□□□□□ -0.29
RFX3-211ENST00000458034 DDX21Q9NR30 783 aaKnown RBP eCLIP13.21□□□□□ -0.29
RFX3-211ENST00000458034 C1orf167Q5SNV9 1468 aa13.21□□□□□ -0.3
RFX3-211ENST00000458034 UTYO14607 1347 aa13.2□□□□□ -0.3
RFX3-211ENST00000458034 PLEKHG5O94827 1062 aa13.2□□□□□ -0.3
RFX3-211ENST00000458034 LMOD2Q6P5Q4 547 aa13.2□□□□□ -0.3
RFX3-211ENST00000458034 RAPGEF4Q8WZA2 1011 aa13.2□□□□□ -0.3
RFX3-211ENST00000458034 ECHDC1Q9NTX5 307 aa13.2□□□□□ -0.3
RFX3-211ENST00000458034 ZDHHC9Q9Y397 364 aa13.2□□□□□ -0.3
RFX3-211ENST00000458034 C5P01031 1676 aa13.2□□□□□ -0.3
RFX3-211ENST00000458034 AFDNP55196 1824 aaKnown RBP13.19□□□□□ -0.3
RFX3-211ENST00000458034 ESPNB1AK53 854 aa13.19□□□□□ -0.3
RFX3-211ENST00000458034 GRM8O00222 908 aa13.19□□□□□ -0.3
RFX3-211ENST00000458034 PHF14O94880 888 aa13.19□□□□□ -0.3
RFX3-211ENST00000458034 TATP17735 454 aaPredicted RBP13.19□□□□□ -0.3
RFX3-211ENST00000458034 NEXNQ0ZGT2 675 aa13.19□□□□□ -0.3
RFX3-211ENST00000458034 PKP1Q13835 747 aa13.19□□□□□ -0.3
RFX3-211ENST00000458034 LARP1Q6PKG0 1096 aaKnown RBP13.19□□□□□ -0.3
RFX3-211ENST00000458034 PROSER2Q86WR7 435 aaPredicted RBP13.19□□□□□ -0.3
RFX3-211ENST00000458034 EVI5LQ96CN4 794 aa13.19□□□□□ -0.3
RFX3-211ENST00000458034 ORAI2Q96SN7 254 aa13.19□□□□□ -0.3
RFX3-211ENST00000458034 LSG1Q9H089 658 aaKnown RBP13.19□□□□□ -0.3
RFX3-211ENST00000458034 SPG7Q9UQ90 795 aa13.19□□□□□ -0.3
RFX3-211ENST00000458034 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.19□□□□□ -0.3
RFX3-211ENST00000458034 LAMB4A4D0S4 1761 aa13.19□□□□□ -0.3
RFX3-211ENST00000458034 G3BP1Q13283 466 aaKnown RBP eCLIP13.18□□□□□ -0.3
RFX3-211ENST00000458034 RBM33Q96EV2 1170 aaKnown RBP13.18□□□□□ -0.3
RFX3-211ENST00000458034 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.18□□□□□ -0.3
RFX3-211ENST00000458034 SNX14Q9Y5W7 946 aa13.18□□□□□ -0.3
RFX3-211ENST00000458034 DCCP43146 1447 aa13.18□□□□□ -0.3
RFX3-211ENST00000458034 PKD1L3Q7Z443 1732 aa13.18□□□□□ -0.3
RFX3-211ENST00000458034 ERBB3P21860 1342 aa13.17□□□□□ -0.3
RFX3-211ENST00000458034 MAP4K4O95819 1239 aaPredicted RBP13.17□□□□□ -0.3
RFX3-211ENST00000458034 ANXA1P04083 346 aa13.17□□□□□ -0.3
RFX3-211ENST00000458034 LRSAM1Q6UWE0 723 aa13.17□□□□□ -0.3
RFX3-211ENST00000458034 ZSCAN31Q96LW9 406 aaPredicted RBP13.17□□□□□ -0.3
RFX3-211ENST00000458034 TM6SF1Q9BZW5 370 aa13.17□□□□□ -0.3
RFX3-211ENST00000458034 LIMCH1Q9UPQ0 1083 aa13.17□□□□□ -0.3
RFX3-211ENST00000458034 ATP6V1DQ9Y5K8 247 aa13.17□□□□□ -0.3
RFX3-211ENST00000458034 COL18A1P39060 1754 aa13.17□□□□□ -0.3
RFX3-211ENST00000458034 MRC1P22897 1456 aa13.16□□□□□ -0.3
RFX3-211ENST00000458034 PARP4Q9UKK3 1724 aaKnown RBP13.16□□□□□ -0.3
RFX3-211ENST00000458034 PDIA4P13667 645 aaKnown RBP13.16□□□□□ -0.3
RFX3-211ENST00000458034 CSPP1Q1MSJ5 1256 aa13.16□□□□□ -0.3
RFX3-211ENST00000458034 HS1BP3Q53T59 392 aa13.16□□□□□ -0.3
RFX3-211ENST00000458034 NOL8Q76FK4 1167 aaKnown RBP13.16□□□□□ -0.3
RFX3-211ENST00000458034 RIC3Q7Z5B4 369 aa13.16□□□□□ -0.3
RFX3-211ENST00000458034 GPT2Q8TD30 523 aa13.16□□□□□ -0.3
RFX3-211ENST00000458034 UPF3BQ9BZI7 483 aaKnown RBP13.16□□□□□ -0.3
RFX3-211ENST00000458034 C19orf44Q9H6X5 657 aa13.16□□□□□ -0.3
RFX3-211ENST00000458034 XPCQ01831 940 aaPredicted RBP13.15□□□□□ -0.3
RFX3-211ENST00000458034 CWC27Q6UX04 472 aaKnown RBP13.15□□□□□ -0.3
RFX3-211ENST00000458034 AACSQ86V21 672 aa13.15□□□□□ -0.3
RFX3-211ENST00000458034 KLHL34Q8N239 644 aa13.15□□□□□ -0.3
RFX3-211ENST00000458034 TTC14Q96N46 770 aa13.15□□□□□ -0.3
RFX3-211ENST00000458034 SLC52A2Q9HAB3 445 aa13.15□□□□□ -0.3
RFX3-211ENST00000458034 SH2B1Q9NRF2 756 aaPredicted RBP13.15□□□□□ -0.3
RFX3-211ENST00000458034 ARFGEF2Q9Y6D5 1785 aa13.15□□□□□ -0.31
RFX3-211ENST00000458034 NPHP3Q7Z494 1330 aa13.14□□□□□ -0.31
RFX3-211ENST00000458034 ZKSCAN1P17029 563 aaPredicted RBP13.14□□□□□ -0.31
RFX3-211ENST00000458034 ATF3P18847 181 aa13.14□□□□□ -0.31
RFX3-211ENST00000458034 PROSER3Q2NL68 480 aa13.14□□□□□ -0.31
RFX3-211ENST00000458034 VPS53Q5VIR6 699 aa13.14□□□□□ -0.31
RFX3-211ENST00000458034 ZNF790Q6PG37 636 aa13.14□□□□□ -0.31
RFX3-211ENST00000458034 IFNL2Q8IZJ0 200 aa13.14□□□□□ -0.31
RFX3-211ENST00000458034 KCNB2Q92953 911 aa13.14□□□□□ -0.31
RFX3-211ENST00000458034 SUCLG2Q96I99 432 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms