RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SP7Q8TDD2 431 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 MICAL1Q8TDZ2 1067 aa6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 CCDC85AQ96PX6 553 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 EGFL7Q9UHF1 273 aa6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 TROQ12816 1431 aaPredicted RBP6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 CLTCQ00610 1675 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 SETD1AO15047 1707 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 ZNF518AQ6AHZ1 1483 aa6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 NRDCO43847 1150 aa6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 HSPA1LP34931 641 aa6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 ESF1Q9H501 851 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 ITSN2Q9NZM3 1697 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 GOLIM4O00461 696 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 RIMBP2O15034 1052 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 ANP32CO43423 234 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 ZNF500O60304 480 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 SEC13P55735 322 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 GTF2IP78347 998 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 PIP4K2BP78356 416 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 FKBP5Q13451 457 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 LONRF3Q496Y0 759 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 LARGE2Q8N3Y3 721 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 ADAM32Q8TC27 787 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 PIK3R5Q8WYR1 880 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 USB1Q9BQ65 265 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 NOD1Q9Y239 953 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 TRAPPC8Q9Y2L5 1435 aa6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 CEP170BQ9Y4F5 1589 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-209ENST00000456975 DHX16O60231 1041 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 PEX14O75381 377 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 FMNL1O95466 1100 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 RHBDL3P58872 404 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 PSME1Q06323 249 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 RAD51AP2Q09MP3 1159 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 MRPL58Q14197 206 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 SF3A1Q15459 793 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 DDX46Q7L014 1031 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 SIX5Q8N196 739 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 TSEN2Q8NCE0 465 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 CHIC2Q9UKJ5 165 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 NUB1Q9Y5A7 615 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 KIF14Q15058 1648 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 AGLP35573 1532 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 MAP3K1Q13233 1512 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 ANKRD62A6NC57 917 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 POTEIP0CG38 1075 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 SCP2P22307 547 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 ATP1A2P50993 1020 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 MAP2K1Q02750 393 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 FKBP4Q02790 459 aaKnown RBP eCLIP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 HDAC1Q13547 482 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 SETDB1Q15047 1291 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 DIEXFQ68CQ4 756 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 ZSCAN29Q8IWY8 852 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 ZNF513Q8N8E2 541 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 MKL1Q969V6 931 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 ARHGAP5Q13017 1502 aa6.03□□□□□ -1.44
CCDC88A-209ENST00000456975 CDC42BPBQ9Y5S2 1711 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 GOLGA6CA6NDK9 693 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 GOLGA6BA6NDN3 693 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 GOLGA6DP0CG33 693 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 CALRP27797 417 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 ZNF280DQ6N043 979 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 NBPF10Q6P3W6 841 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 TMC7Q7Z402 723 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 TRIM50Q86XT4 487 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 NT5DC4Q86YG4 428 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 SMAP1Q8IYB5 467 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 ATL2Q8NHH9 583 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 DHX38Q92620 1227 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 TANGO6Q9C0B7 1094 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 GEMIN8Q9NWZ8 242 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 GOLGA6AQ9NYA3 693 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 DOLKQ9UPQ8 538 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 PLCH2O75038 1416 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 PLA2R1Q13018 1463 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 PTK2Q05397 1052 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 MTA1Q13330 715 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 UTP14CQ5TAP6 766 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 CCDC181Q5TID7 509 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 ANKRD23Q86SG2 305 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 YY1AP1Q9H869 796 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 RABGEF1Q9UJ41 708 aa6.02□□□□□ -1.45
CCDC88A-209ENST00000456975 CNTLNQ9NXG0 1405 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 KIDINS220Q9ULH0 1771 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 CPS1P31327 1500 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 SCAMP3O14828 347 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 EPB41L2O43491 1005 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 SLC4A3P48751 1232 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 Q3C1V9 767 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 MAP7D1Q3KQU3 841 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 TAF3Q5VWG9 929 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 NBPF6Q5VWK0 638 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 MAMSTRQ6ZN01 415 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 GET4Q7L5D6 327 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 NBPF5PQ86XG9 351 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 RGL4Q8IZJ4 473 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 MSL3Q8N5Y2 521 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 TMEM87AQ8NBN3 555 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 NBPF4Q96M43 638 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms