RNA–Protein interactions for RNA: ENST00000454612.6

DDR1-240, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene DDR1, Length 3,942 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-240ENST00000454612 ZBTB3Q9H5J0 574 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 USP25Q9UHP3 1055 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 PTPRCP08575 1304 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 EDC4Q6P2E9 1401 aaKnown RBP13.38□□□□□ -0.27
DDR1-240ENST00000454612 ATP7BP35670 1465 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 UBE3BQ7Z3V4 1068 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 CKAP2LQ8IYA6 745 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 KIF1BPQ96EK5 621 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 PDRG1Q9NUG6 133 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 CNPY2Q9Y2B0 182 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 CREBRFQ8IUR6 639 aa13.37□□□□□ -0.27
DDR1-240ENST00000454612 ATP8B2P98198 1209 aa13.37□□□□□ -0.27
DDR1-240ENST00000454612 NFATC2IPQ8NCF5 419 aa13.37□□□□□ -0.27
DDR1-240ENST00000454612 ATP2B1P20020 1258 aa13.37□□□□□ -0.27
DDR1-240ENST00000454612 CADPS2Q86UW7 1296 aa13.37□□□□□ -0.27
DDR1-240ENST00000454612 ANKRD24Q8TF21 1146 aa13.37□□□□□ -0.27
DDR1-240ENST00000454612 CHMLP26374 656 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 SF3A1Q15459 793 aaKnown RBP13.36□□□□□ -0.27
DDR1-240ENST00000454612 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.36□□□□□ -0.27
DDR1-240ENST00000454612 GIMAP6Q6P9H5 292 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 SNX21Q969T3 373 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 CYP46A1Q9Y6A2 500 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 MAP2P11137 1827 aaKnown RBP13.36□□□□□ -0.27
DDR1-240ENST00000454612 ABCC4O15439 1325 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 RAB11FIP3O75154 756 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 BRPF1P55201 1214 aaPredicted RBP13.36□□□□□ -0.27
DDR1-240ENST00000454612 HSP90AB3PQ58FF7 597 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 DDX46Q7L014 1031 aaKnown RBP13.36□□□□□ -0.27
DDR1-240ENST00000454612 COPS6Q7L5N1 327 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 CHST3Q7LGC8 479 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 USP44Q9H0E7 712 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 ANKRD26Q9UPS8 1709 aa13.36□□□□□ -0.27
DDR1-240ENST00000454612 FSD2A1L4K1 749 aa13.35□□□□□ -0.27
DDR1-240ENST00000454612 PROSER3Q2NL68 480 aa13.35□□□□□ -0.27
DDR1-240ENST00000454612 TOM1L2Q6ZVM7 507 aa13.35□□□□□ -0.27
DDR1-240ENST00000454612 TSPY26PQ9H489 355 aa13.35□□□□□ -0.27
DDR1-240ENST00000454612 GADD45BO75293 160 aaPredicted RBP13.35□□□□□ -0.27
DDR1-240ENST00000454612 HCLS1P14317 486 aaPredicted RBP13.35□□□□□ -0.27
DDR1-240ENST00000454612 RBSNQ9H1K0 784 aa13.35□□□□□ -0.27
DDR1-240ENST00000454612 CABP4P57796 275 aa13.35□□□□□ -0.27
DDR1-240ENST00000454612 CHAF1AQ13111 956 aaPredicted RBP13.35□□□□□ -0.27
DDR1-240ENST00000454612 CWC22Q9HCG8 908 aaKnown RBP13.35□□□□□ -0.27
DDR1-240ENST00000454612 KIF20BQ96Q89 1820 aa13.35□□□□□ -0.27
DDR1-240ENST00000454612 ADGRL3Q9HAR2 1447 aa13.35□□□□□ -0.27
DDR1-240ENST00000454612 CCT2P78371 535 aaKnown RBP13.34□□□□□ -0.27
DDR1-240ENST00000454612 NSFL1CQ9UNZ2 370 aaKnown RBP13.34□□□□□ -0.27
DDR1-240ENST00000454612 ERBB4Q15303 1308 aa13.34□□□□□ -0.27
DDR1-240ENST00000454612 HSP90AB4PQ58FF6 505 aa13.34□□□□□ -0.27
DDR1-240ENST00000454612 PLCD3Q8N3E9 789 aa13.34□□□□□ -0.27
DDR1-240ENST00000454612 RTL1A6NKG5 1358 aa13.34□□□□□ -0.27
DDR1-240ENST00000454612 TATP17735 454 aaPredicted RBP13.34□□□□□ -0.27
DDR1-240ENST00000454612 XAGE3Q8WTP9 111 aa13.34□□□□□ -0.27
DDR1-240ENST00000454612 MAP7D2Q96T17 732 aa13.34□□□□□ -0.27
DDR1-240ENST00000454612 KNDC1Q76NI1 1749 aa13.34□□□□□ -0.27
DDR1-240ENST00000454612 USP48Q86UV5 1035 aa13.33□□□□□ -0.27
DDR1-240ENST00000454612 C17orf53Q8N3J3 647 aaPredicted RBP13.33□□□□□ -0.27
DDR1-240ENST00000454612 A0A087WZG4 1122 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 PLEKHG3A1L390 1219 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 HAND2P61296 217 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 KLHL40Q2TBA0 621 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 KRT28Q7Z3Y7 464 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 FAM227BQ96M60 508 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 GJB2P29033 226 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 AK2P54819 239 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 CCDC173Q0VFZ6 552 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 BLOC1S2Q6QNY1 142 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 KIF2CQ99661 725 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 DBF4Q9UBU7 674 aaPredicted RBP13.33□□□□□ -0.28
DDR1-240ENST00000454612 MTMR7Q9Y216 660 aa13.33□□□□□ -0.28
DDR1-240ENST00000454612 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.33□□□□□ -0.28
DDR1-240ENST00000454612 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.32□□□□□ -0.28
DDR1-240ENST00000454612 AATKQ6ZMQ8 1374 aa13.32□□□□□ -0.28
DDR1-240ENST00000454612 SOS1Q07889 1333 aaPredicted RBP13.32□□□□□ -0.28
DDR1-240ENST00000454612 GCP02774 474 aa13.32□□□□□ -0.28
DDR1-240ENST00000454612 DNM1Q05193 864 aaKnown RBP13.32□□□□□ -0.28
DDR1-240ENST00000454612 CCDC129Q6ZRS4 1044 aa13.32□□□□□ -0.28
DDR1-240ENST00000454612 GPTP24298 496 aa13.32□□□□□ -0.28
DDR1-240ENST00000454612 PRDM11Q9NQV5 511 aa13.32□□□□□ -0.28
DDR1-240ENST00000454612 CDC42BPGQ6DT37 1551 aa13.32□□□□□ -0.28
DDR1-240ENST00000454612 CDK12Q9NYV4 1490 aaPredicted RBP13.32□□□□□ -0.28
DDR1-240ENST00000454612 CCDC82Q8N4S0 544 aa13.32□□□□□ -0.28
DDR1-240ENST00000454612 WDR33Q9C0J8 1336 aaKnown RBP13.31□□□□□ -0.28
DDR1-240ENST00000454612 GLRX3O76003 335 aaKnown RBP13.31□□□□□ -0.28
DDR1-240ENST00000454612 PHF14O94880 888 aa13.31□□□□□ -0.28
DDR1-240ENST00000454612 PDIA4P13667 645 aaKnown RBP13.31□□□□□ -0.28
DDR1-240ENST00000454612 RNF20Q5VTR2 975 aa13.31□□□□□ -0.28
DDR1-240ENST00000454612 FLT4P35916 1363 aa13.31□□□□□ -0.28
DDR1-240ENST00000454612 ECHDC1Q9NTX5 307 aa13.31□□□□□ -0.28
DDR1-240ENST00000454612 TMEM63CQ9P1W3 806 aa13.31□□□□□ -0.28
DDR1-240ENST00000454612 ATP6V1DQ9Y5K8 247 aa13.31□□□□□ -0.28
DDR1-240ENST00000454612 BECN2A8MW95 431 aa13.3□□□□□ -0.28
DDR1-240ENST00000454612 TTC12Q9H892 705 aaPredicted RBP13.3□□□□□ -0.28
DDR1-240ENST00000454612 MBD3O95983 291 aa13.3□□□□□ -0.28
DDR1-240ENST00000454612 RASEFQ8IZ41 740 aa13.3□□□□□ -0.28
DDR1-240ENST00000454612 BICC1Q9H694 974 aaKnown RBP13.3□□□□□ -0.28
DDR1-240ENST00000454612 UQCRHLA0A096LP55 91 aa13.29□□□□□ -0.28
DDR1-240ENST00000454612 GOLIM4O00461 696 aa13.29□□□□□ -0.28
DDR1-240ENST00000454612 UQCRHP07919 91 aa13.29□□□□□ -0.28
DDR1-240ENST00000454612 RRP12Q5JTH9 1297 aaKnown RBP13.29□□□□□ -0.28
DDR1-240ENST00000454612 TRIM5Q9C035 493 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms