RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 ZNF496Q96IT1 587 aaPredicted RBP11.36□□□□□ -0.59
SYNE1-214ENST00000454018 FANCIQ9NVI1 1328 aa11.36□□□□□ -0.59
SYNE1-214ENST00000454018 PTCD1O75127 700 aaKnown RBP11.35□□□□□ -0.59
SYNE1-214ENST00000454018 GPIHBP1Q8IV16 184 aa11.35□□□□□ -0.59
SYNE1-214ENST00000454018 DDX27Q96GQ7 796 aaKnown RBP11.35□□□□□ -0.59
SYNE1-214ENST00000454018 MIS18AQ9NYP9 233 aa11.35□□□□□ -0.59
SYNE1-214ENST00000454018 CCNL1Q9UK58 526 aaPredicted RBP11.35□□□□□ -0.59
SYNE1-214ENST00000454018 KCNQ3O43525 872 aa11.35□□□□□ -0.59
SYNE1-214ENST00000454018 EIF4A1P60842 406 aaKnown RBP11.35□□□□□ -0.59
SYNE1-214ENST00000454018 CAMK2BQ13554 666 aa11.35□□□□□ -0.59
SYNE1-214ENST00000454018 TXNRD1Q16881 649 aa11.35□□□□□ -0.59
SYNE1-214ENST00000454018 CAMKK2Q96RR4 588 aa11.35□□□□□ -0.59
SYNE1-214ENST00000454018 BCORQ6W2J9 1755 aa11.34□□□□□ -0.59
SYNE1-214ENST00000454018 SOS1Q07889 1333 aaPredicted RBP11.34□□□□□ -0.59
SYNE1-214ENST00000454018 HOXB7P09629 217 aa11.34□□□□□ -0.59
SYNE1-214ENST00000454018 ATP6V1AP38606 617 aa11.34□□□□□ -0.59
SYNE1-214ENST00000454018 EN1Q05925 392 aaPredicted RBP11.34□□□□□ -0.59
SYNE1-214ENST00000454018 DEFB132Q7Z7B7 95 aa11.34□□□□□ -0.59
SYNE1-214ENST00000454018 TSR2Q969E8 191 aaKnown RBP11.34□□□□□ -0.59
SYNE1-214ENST00000454018 SNRPA1P09661 255 aaKnown RBP11.33□□□□□ -0.6
SYNE1-214ENST00000454018 SLFN5Q08AF3 891 aa11.33□□□□□ -0.6
SYNE1-214ENST00000454018 EZH2Q15910 746 aaKnown RBP11.33□□□□□ -0.6
SYNE1-214ENST00000454018 MS4A4AQ96JQ5 239 aa11.33□□□□□ -0.6
SYNE1-214ENST00000454018 YTHDC1Q96MU7 727 aaKnown RBP11.33□□□□□ -0.6
SYNE1-214ENST00000454018 SLC4A9Q96Q91 983 aa11.33□□□□□ -0.6
SYNE1-214ENST00000454018 TEX13AQ9BXU3 409 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-214ENST00000454018 SCN7AQ01118 1682 aa11.33□□□□□ -0.6
SYNE1-214ENST00000454018 TRIM66O15016 1216 aa11.32□□□□□ -0.6
SYNE1-214ENST00000454018 GIGYF1O75420 1035 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-214ENST00000454018 CNTNAP4Q9C0A0 1308 aa11.32□□□□□ -0.6
SYNE1-214ENST00000454018 ANKRD36CQ5JPF3 1778 aa11.31□□□□□ -0.6
SYNE1-214ENST00000454018 SOCS7O14512 581 aa11.31□□□□□ -0.6
SYNE1-214ENST00000454018 ITPK1Q13572 414 aa11.31□□□□□ -0.6
SYNE1-214ENST00000454018 TRMT2AQ8IZ69 625 aaKnown RBP11.31□□□□□ -0.6
SYNE1-214ENST00000454018 CDCA7LQ96GN5 454 aa11.31□□□□□ -0.6
SYNE1-214ENST00000454018 LRRC4BQ9NT99 713 aa11.31□□□□□ -0.6
SYNE1-214ENST00000454018 CASZ1Q86V15 1759 aa11.31□□□□□ -0.6
SYNE1-214ENST00000454018 NUP98P52948 1817 aa11.31□□□□□ -0.6
SYNE1-214ENST00000454018 STARD3NLO95772 234 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 PDE4DQ08499 809 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 DUSP27Q5VZP5 1158 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 DNAJC10Q8IXB1 793 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 CHMP4AQ9BY43 222 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 N4BP2Q86UW6 1770 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-214ENST00000454018 ARFGEF2Q9Y6D5 1785 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 ERBB4Q15303 1308 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 MAP3K13O43283 966 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 KRT24Q2M2I5 525 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 TWISTNBQ3B726 338 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-214ENST00000454018 LINC00116Q8NCU8 138 aa11.3□□□□□ -0.6
SYNE1-214ENST00000454018 CYP19A1P11511 503 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-214ENST00000454018 CRKLP46109 303 aaKnown RBP11.29□□□□□ -0.6
SYNE1-214ENST00000454018 KCNQ4P56696 695 aa11.29□□□□□ -0.6
SYNE1-214ENST00000454018 EXOSC9Q06265 439 aaKnown RBP11.29□□□□□ -0.6
SYNE1-214ENST00000454018 PRAMEF22A3QJZ6 481 aa11.28□□□□□ -0.6
SYNE1-214ENST00000454018 CT47B1P0C2W7 299 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-214ENST00000454018 RC3H1Q5TC82 1133 aaKnown RBP11.28□□□□□ -0.6
SYNE1-214ENST00000454018 HDGFL1Q5TGJ6 251 aa11.28□□□□□ -0.6
SYNE1-214ENST00000454018 C8orf58Q8NAV2 365 aa11.28□□□□□ -0.6
SYNE1-214ENST00000454018 CCDC87Q9NVE4 849 aa11.28□□□□□ -0.6
SYNE1-214ENST00000454018 COL24A1Q17RW2 1714 aa11.28□□□□□ -0.6
SYNE1-214ENST00000454018 AFDNP55196 1824 aaKnown RBP11.27□□□□□ -0.6
SYNE1-214ENST00000454018 TSPYL6Q8N831 410 aa11.27□□□□□ -0.61
SYNE1-214ENST00000454018 ZNF428Q96B54 188 aa11.27□□□□□ -0.61
SYNE1-214ENST00000454018 ARID3AQ99856 593 aa11.27□□□□□ -0.61
SYNE1-214ENST00000454018 C1orf115Q9H7X2 142 aa11.27□□□□□ -0.61
SYNE1-214ENST00000454018 USP16Q9Y5T5 823 aa11.27□□□□□ -0.61
SYNE1-214ENST00000454018 ELL2O00472 640 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-214ENST00000454018 NBPF14Q5TI25 921 aa11.26□□□□□ -0.61
SYNE1-214ENST00000454018 ANO8Q9HCE9 1232 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-214ENST00000454018 STK32BQ9NY57 414 aa11.26□□□□□ -0.61
SYNE1-214ENST00000454018 ZBTB1Q9Y2K1 713 aa11.26□□□□□ -0.61
SYNE1-214ENST00000454018 COL15A1P39059 1388 aa11.26□□□□□ -0.61
SYNE1-214ENST00000454018 GNPATO15228 680 aa11.25□□□□□ -0.61
SYNE1-214ENST00000454018 EIF2S2P20042 333 aaKnown RBP11.25□□□□□ -0.61
SYNE1-214ENST00000454018 SSFA2P28290 1259 aa11.25□□□□□ -0.61
SYNE1-214ENST00000454018 MKRN3Q13064 507 aaKnown RBP11.25□□□□□ -0.61
SYNE1-214ENST00000454018 ZNF827Q17R98 1081 aa11.25□□□□□ -0.61
SYNE1-214ENST00000454018 CCDC30Q5VVM6 783 aa11.25□□□□□ -0.61
SYNE1-214ENST00000454018 INTS5Q6P9B9 1019 aaKnown RBP11.25□□□□□ -0.61
SYNE1-214ENST00000454018 KIF12Q96FN5 646 aa11.25□□□□□ -0.61
SYNE1-214ENST00000454018 DBF4Q9UBU7 674 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-214ENST00000454018 VAMP4O75379 141 aa11.25□□□□□ -0.61
SYNE1-214ENST00000454018 IL6STP40189 918 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-214ENST00000454018 SLC15A2Q16348 729 aa11.25□□□□□ -0.61
SYNE1-214ENST00000454018 STK31Q9BXU1 1019 aa11.25□□□□□ -0.61
SYNE1-214ENST00000454018 RTCBQ9Y3I0 505 aaKnown RBP11.25□□□□□ -0.61
SYNE1-214ENST00000454018 RPS6KA4O75676 772 aa11.24□□□□□ -0.61
SYNE1-214ENST00000454018 A1BGP04217 495 aa11.24□□□□□ -0.61
SYNE1-214ENST00000454018 FLAD1Q8NFF5 587 aa11.24□□□□□ -0.61
SYNE1-214ENST00000454018 DDX21Q9NR30 783 aaKnown RBP eCLIP11.24□□□□□ -0.61
SYNE1-214ENST00000454018 TFCP2L1Q9NZI6 479 aa11.24□□□□□ -0.61
SYNE1-214ENST00000454018 CHPF2Q9P2E5 772 aa11.24□□□□□ -0.61
SYNE1-214ENST00000454018 NBPF26B4DH59 902 aa11.23□□□□□ -0.61
SYNE1-214ENST00000454018 CANXP27824 592 aaKnown RBP11.23□□□□□ -0.61
SYNE1-214ENST00000454018 EIF5P55010 431 aaKnown RBP11.23□□□□□ -0.61
SYNE1-214ENST00000454018 NBPF10Q6P3W6 841 aaKnown RBP11.23□□□□□ -0.61
SYNE1-214ENST00000454018 NPM2Q86SE8 214 aaKnown RBP11.23□□□□□ -0.61
SYNE1-214ENST00000454018 NBPF15Q8N660 670 aa11.23□□□□□ -0.61
SYNE1-214ENST00000454018 NECTIN2Q92692 538 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms