RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 RHPN1Q8TCX5 695 aa7.85□□□□□ -1.15
USP40-209ENST00000452724 PRR12Q9ULL5 1215 aa7.85□□□□□ -1.15
USP40-209ENST00000452724 SHISA8B8ZZ34 492 aa7.84□□□□□ -1.15
USP40-209ENST00000452724 EML1O00423 815 aa7.84□□□□□ -1.15
USP40-209ENST00000452724 IGHA1P01876 353 aa7.84□□□□□ -1.15
USP40-209ENST00000452724 CD33P20138 364 aa7.84□□□□□ -1.15
USP40-209ENST00000452724 SEC13P55735 322 aa7.84□□□□□ -1.15
USP40-209ENST00000452724 C1orf53Q5VUE5 145 aa7.84□□□□□ -1.15
USP40-209ENST00000452724 PPP1R12CQ9BZL4 782 aa7.84□□□□□ -1.15
USP40-209ENST00000452724 TSPAN10Q9H1Z9 355 aaPredicted RBP7.84□□□□□ -1.15
USP40-209ENST00000452724 MARK1Q9P0L2 795 aa7.84□□□□□ -1.15
USP40-209ENST00000452724 ANKIB1Q9P2G1 1089 aa7.84□□□□□ -1.15
USP40-209ENST00000452724 HIRAP54198 1017 aaPredicted RBP7.83□□□□□ -1.16
USP40-209ENST00000452724 LRRC69Q6ZNQ3 347 aa7.83□□□□□ -1.16
USP40-209ENST00000452724 TSEN2Q8NCE0 465 aaKnown RBP7.83□□□□□ -1.16
USP40-209ENST00000452724 ARID3AQ99856 593 aa7.83□□□□□ -1.16
USP40-209ENST00000452724 SFI1A8K8P3 1242 aa7.82□□□□□ -1.16
USP40-209ENST00000452724 NEURL1BA8MQ27 555 aa7.82□□□□□ -1.16
USP40-209ENST00000452724 PPP1R12BO60237 982 aaPredicted RBP7.82□□□□□ -1.16
USP40-209ENST00000452724 EPXP11678 715 aa7.82□□□□□ -1.16
USP40-209ENST00000452724 GAS2L2Q8NHY3 880 aa7.82□□□□□ -1.16
USP40-209ENST00000452724 EFSO43281 561 aa7.81□□□□□ -1.16
USP40-209ENST00000452724 HIF1AQ16665 826 aa7.81□□□□□ -1.16
USP40-209ENST00000452724 ZNF468Q5VIY5 522 aaPredicted RBP7.81□□□□□ -1.16
USP40-209ENST00000452724 GPAT2Q6NUI2 795 aa7.81□□□□□ -1.16
USP40-209ENST00000452724 C1orf229Q6ZS94 237 aaPredicted RBP7.81□□□□□ -1.16
USP40-209ENST00000452724 ALYREFQ86V81 257 aaKnown RBP7.81□□□□□ -1.16
USP40-209ENST00000452724 VRTNQ9H8Y1 702 aa7.81□□□□□ -1.16
USP40-209ENST00000452724 LMOD1P29536 600 aaPredicted RBP7.8□□□□□ -1.16
USP40-209ENST00000452724 NEUROD1Q13562 356 aa7.8□□□□□ -1.16
USP40-209ENST00000452724 CFAP70Q5T0N1 1121 aa7.8□□□□□ -1.16
USP40-209ENST00000452724 STAG2Q8N3U4 1231 aa7.8□□□□□ -1.16
USP40-209ENST00000452724 DCAF5Q96JK2 942 aa7.8□□□□□ -1.16
USP40-209ENST00000452724 BTBD6Q96KE9 485 aa7.8□□□□□ -1.16
USP40-209ENST00000452724 PHACTR1Q9C0D0 580 aa7.8□□□□□ -1.16
USP40-209ENST00000452724 HCN4Q9Y3Q4 1203 aa7.8□□□□□ -1.16
USP40-209ENST00000452724 FAM196BA6NMK8 535 aa7.79□□□□□ -1.16
USP40-209ENST00000452724 SNRPNP63162 240 aaKnown RBP7.79□□□□□ -1.16
USP40-209ENST00000452724 SH3PXD2AQ5TCZ1 1133 aa7.79□□□□□ -1.16
USP40-209ENST00000452724 POTEAQ6S8J7 498 aa7.79□□□□□ -1.16
USP40-209ENST00000452724 HINFPQ9BQA5 517 aa7.79□□□□□ -1.16
USP40-209ENST00000452724 ATAD2Q6PL18 1390 aa7.79□□□□□ -1.16
USP40-209ENST00000452724 USP17L15C9J2P7 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L10C9JJH3 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L13C9JLJ4 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L12C9JPN9 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L11C9JVI0 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L21D6R901 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L18D6R9N7 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L22D6RA61 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L17D6RBQ6 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L19D6RCP7 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L20D6RJB6 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 GNB5O14775 395 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 DKK1O94907 266 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 ALAS2P22557 587 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 USP17L24Q0WX57 530 aa7.78□□□□□ -1.16
USP40-209ENST00000452724 SCG3Q8WXD2 468 aaKnown RBP7.78□□□□□ -1.16
USP40-209ENST00000452724 NOP53Q9NZM5 478 aaKnown RBP7.78□□□□□ -1.16
USP40-209ENST00000452724 RFX1P22670 979 aa7.77□□□□□ -1.17
USP40-209ENST00000452724 PCBP4P57723 403 aaKnown RBP7.77□□□□□ -1.17
USP40-209ENST00000452724 DPYDQ12882 1025 aa7.77□□□□□ -1.17
USP40-209ENST00000452724 PTK7Q13308 1070 aa7.77□□□□□ -1.17
USP40-209ENST00000452724 KANK4Q5T7N3 995 aaPredicted RBP7.77□□□□□ -1.17
USP40-209ENST00000452724 CHSY3Q70JA7 882 aa7.77□□□□□ -1.17
USP40-209ENST00000452724 ANKMY2Q8IV38 441 aa7.77□□□□□ -1.17
USP40-209ENST00000452724 CHMP7Q8WUX9 453 aaPredicted RBP7.77□□□□□ -1.17
USP40-209ENST00000452724 CEP63Q96MT8 703 aa7.77□□□□□ -1.17
USP40-209ENST00000452724 STRN4Q9NRL3 753 aa7.77□□□□□ -1.17
USP40-209ENST00000452724 CRTC2Q53ET0 693 aaPredicted RBP7.76□□□□□ -1.17
USP40-209ENST00000452724 SYT9Q86SS6 491 aa7.76□□□□□ -1.17
USP40-209ENST00000452724 FCHSD1Q86WN1 690 aa7.76□□□□□ -1.17
USP40-209ENST00000452724 ALDH16A1Q8IZ83 802 aa7.76□□□□□ -1.17
USP40-209ENST00000452724 C7orf43Q8WVR3 580 aa7.76□□□□□ -1.17
USP40-209ENST00000452724 C2orf49Q9BVC5 232 aaPredicted RBP7.76□□□□□ -1.17
USP40-209ENST00000452724 BRD7Q9NPI1 651 aa7.76□□□□□ -1.17
USP40-209ENST00000452724 C21orf2O43822 256 aa7.75□□□□□ -1.17
USP40-209ENST00000452724 DGKGP49619 791 aa7.75□□□□□ -1.17
USP40-209ENST00000452724 PLA2G4EQ3MJ16 856 aa7.75□□□□□ -1.17
USP40-209ENST00000452724 NGLY1Q96IV0 654 aa7.75□□□□□ -1.17
USP40-209ENST00000452724 HSH2DQ96JZ2 352 aa7.75□□□□□ -1.17
USP40-209ENST00000452724 SUSD3Q96L08 255 aa7.75□□□□□ -1.17
USP40-209ENST00000452724 HCN2Q9UL51 889 aa7.75□□□□□ -1.17
USP40-209ENST00000452724 ELOA3CA0A087WX78 387 aaPredicted RBP7.74□□□□□ -1.17
USP40-209ENST00000452724 ELOA3DA6NLF2 546 aaPredicted RBP7.74□□□□□ -1.17
USP40-209ENST00000452724 MSTNO14793 375 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 SIN3BO75182 1162 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 IGFBP4P22692 258 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 SPEM2Q0P670 501 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 SFSWAPQ12872 951 aaKnown RBP7.74□□□□□ -1.17
USP40-209ENST00000452724 GRIN2CQ14957 1233 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 ELOA3BQ3SY89 546 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 LINC00114Q6XXX2 140 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 ELOA3Q8NG57 546 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 KLF15Q9UIH9 416 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 KCNH4Q9UQ05 1017 aa7.74□□□□□ -1.17
USP40-209ENST00000452724 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.73□□□□□ -1.17
USP40-209ENST00000452724 KCNQ4P56696 695 aa7.73□□□□□ -1.17
USP40-209ENST00000452724 RTN1Q16799 776 aa7.73□□□□□ -1.17
USP40-209ENST00000452724 VTI1AQ96AJ9 217 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms