RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SOS1Q07889 1333 aaPredicted RBP10.34□□□□□ -0.75
CD44-211ENST00000442151 SENP3-EIF4A1A0A087X0R7 540 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 A0A0G2JLW4 131 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 TM4SF1P30408 202 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 ZNF790Q6PG37 636 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 BTBD11A6QL63 1104 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 DPEP1P16444 411 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 PPP2R1AP30153 589 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 PRKAR2BP31323 418 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 FKBP8Q14318 412 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 USPL1Q5W0Q7 1092 aa10.33□□□□□ -0.76
CD44-211ENST00000442151 PNISRQ8TF01 805 aaKnown RBP10.33□□□□□ -0.76
CD44-211ENST00000442151 COL5A3P25940 1745 aaPredicted RBP10.32□□□□□ -0.76
CD44-211ENST00000442151 MRC1P22897 1456 aa10.32□□□□□ -0.76
CD44-211ENST00000442151 C10orf71Q711Q0 1435 aa10.32□□□□□ -0.76
CD44-211ENST00000442151 IL6STP40189 918 aaPredicted RBP10.32□□□□□ -0.76
CD44-211ENST00000442151 IL17REQ8NFR9 667 aa10.32□□□□□ -0.76
CD44-211ENST00000442151 ATP10DQ9P241 1426 aa10.31□□□□□ -0.76
CD44-211ENST00000442151 HEG1Q9ULI3 1381 aa10.31□□□□□ -0.76
CD44-211ENST00000442151 CANXP27824 592 aaKnown RBP10.31□□□□□ -0.76
CD44-211ENST00000442151 SRP68Q9UHB9 627 aaKnown RBP10.31□□□□□ -0.76
CD44-211ENST00000442151 CICQ96RK0 1608 aaPredicted RBP10.31□□□□□ -0.76
CD44-211ENST00000442151 C4AP0C0L4 1744 aa10.31□□□□□ -0.76
CD44-211ENST00000442151 COL15A1P39059 1388 aa10.31□□□□□ -0.76
CD44-211ENST00000442151 H0YIN7 160 aa10.3□□□□□ -0.76
CD44-211ENST00000442151 POLRMTO00411 1230 aaKnown RBP10.3□□□□□ -0.76
CD44-211ENST00000442151 SERPINB2P05120 415 aa10.3□□□□□ -0.76
CD44-211ENST00000442151 EIF5P55010 431 aaKnown RBP10.3□□□□□ -0.76
CD44-211ENST00000442151 RSPH6AQ9H0K4 717 aa10.3□□□□□ -0.76
CD44-211ENST00000442151 ZNF652Q9Y2D9 606 aa10.3□□□□□ -0.76
CD44-211ENST00000442151 PXDNLA1KZ92 1463 aa10.3□□□□□ -0.76
CD44-211ENST00000442151 RGL2O15211 777 aa10.3□□□□□ -0.76
CD44-211ENST00000442151 NPHP1O15259 732 aa10.3□□□□□ -0.76
CD44-211ENST00000442151 SNRPA1P09661 255 aaKnown RBP10.3□□□□□ -0.76
CD44-211ENST00000442151 PDE6BP35913 854 aa10.3□□□□□ -0.76
CD44-211ENST00000442151 C16orf71Q8IYS4 520 aaPredicted RBP10.3□□□□□ -0.76
CD44-211ENST00000442151 L3MBTL3Q96JM7 780 aaPredicted RBP10.3□□□□□ -0.76
CD44-211ENST00000442151 ZBTB1Q9Y2K1 713 aa10.3□□□□□ -0.76
CD44-211ENST00000442151 GOLGB1Q14789 3259 aaKnown RBP10.29□□□□□ -0.76
CD44-211ENST00000442151 KDM2BQ8NHM5 1336 aa10.29□□□□□ -0.76
CD44-211ENST00000442151 NFIXQ14938 502 aa10.29□□□□□ -0.76
CD44-211ENST00000442151 TAF7Q15545 349 aaPredicted RBP10.29□□□□□ -0.76
CD44-211ENST00000442151 ZNF496Q96IT1 587 aaPredicted RBP10.29□□□□□ -0.76
CD44-211ENST00000442151 SETDB2Q96T68 719 aa10.29□□□□□ -0.76
CD44-211ENST00000442151 COL3A1P02461 1466 aaPredicted RBP10.28□□□□□ -0.76
CD44-211ENST00000442151 KIF13BQ9NQT8 1826 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 DDR1Q08345 913 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 RALBP1Q15311 655 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 TTLL6Q8N841 843 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 MYH14Q7Z406 1995 aaKnown RBP10.28□□□□□ -0.76
CD44-211ENST00000442151 CEMIPQ8WUJ3 1361 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 KCNA3P22001 575 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 ST5P78524 1137 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 CLEC4GQ6UXB4 293 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 BRIP1Q9BX63 1249 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 WWC3Q9ULE0 1092 aa10.28□□□□□ -0.76
CD44-211ENST00000442151 ADCY9O60503 1353 aa10.27□□□□□ -0.76
CD44-211ENST00000442151 ADAMTS7Q9UKP4 1686 aa10.27□□□□□ -0.76
CD44-211ENST00000442151 MAPK8IP3Q9UPT6 1336 aa10.27□□□□□ -0.77
CD44-211ENST00000442151 ZC3H4Q9UPT8 1303 aaKnown RBP10.27□□□□□ -0.77
CD44-211ENST00000442151 TJP1Q07157 1748 aa10.27□□□□□ -0.77
CD44-211ENST00000442151 SOGA3Q5TF21 947 aa10.27□□□□□ -0.77
CD44-211ENST00000442151 C2CD5Q86YS7 1000 aa10.27□□□□□ -0.77
CD44-211ENST00000442151 ZNF526Q8TF50 670 aaPredicted RBP10.27□□□□□ -0.77
CD44-211ENST00000442151 PHACTR3Q96KR7 559 aa10.27□□□□□ -0.77
CD44-211ENST00000442151 ZNF330Q9Y3S2 320 aaPredicted RBP10.27□□□□□ -0.77
CD44-211ENST00000442151 KCPQ6ZWJ8 1503 aa10.27□□□□□ -0.77
CD44-211ENST00000442151 TOMM70O94826 608 aa10.26□□□□□ -0.77
CD44-211ENST00000442151 C9orf131Q5VYM1 1079 aa10.26□□□□□ -0.77
CD44-211ENST00000442151 CNKSR1Q969H4 720 aa10.26□□□□□ -0.77
CD44-211ENST00000442151 LMOD3Q0VAK6 560 aa10.26□□□□□ -0.77
CD44-211ENST00000442151 BICDL1Q6ZP65 573 aa10.26□□□□□ -0.77
CD44-211ENST00000442151 DZIP3Q86Y13 1208 aaKnown RBP10.26□□□□□ -0.77
CD44-211ENST00000442151 CARMIL3Q8ND23 1372 aa10.26□□□□□ -0.77
CD44-211ENST00000442151 HSPA6P17066 643 aa10.25□□□□□ -0.77
CD44-211ENST00000442151 TPTE2Q6XPS3 522 aa10.25□□□□□ -0.77
CD44-211ENST00000442151 TBC1D2BQ9UPU7 963 aa10.25□□□□□ -0.77
CD44-211ENST00000442151 A1BGP04217 495 aa10.24□□□□□ -0.77
CD44-211ENST00000442151 LMNB1P20700 586 aa10.24□□□□□ -0.77
CD44-211ENST00000442151 CHRNA5P30532 468 aa10.24□□□□□ -0.77
CD44-211ENST00000442151 ZNF622Q969S3 477 aaKnown RBP eCLIP10.24□□□□□ -0.77
CD44-211ENST00000442151 BCL2L12Q9HB09 334 aa10.24□□□□□ -0.77
CD44-211ENST00000442151 BABAM1Q9NWV8 329 aa10.24□□□□□ -0.77
CD44-211ENST00000442151 RNF181Q9P0P0 153 aa10.24□□□□□ -0.77
CD44-211ENST00000442151 N4BP2Q86UW6 1770 aaPredicted RBP10.24□□□□□ -0.77
CD44-211ENST00000442151 APLP1P51693 650 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 NFE2L2Q16236 605 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 DPY19L2Q6NUT2 758 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 MCM10Q7L590 875 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 MIER1Q8N108 512 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 CNBD1Q8NA66 436 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 RBM46Q8TBY0 533 aaKnown RBP10.23□□□□□ -0.77
CD44-211ENST00000442151 VIRMAQ69YN4 1812 aaKnown RBP10.23□□□□□ -0.77
CD44-211ENST00000442151 KIF3CO14782 793 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 FSTL1Q12841 308 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 TBC1D9BQ66K14 1250 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 STYK1Q6J9G0 422 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 NYXQ9GZU5 481 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 UBR2Q8IWV8 1755 aa10.23□□□□□ -0.77
CD44-211ENST00000442151 CAMTA2O94983 1202 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms