RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 DMTNQ08495 405 aa12.74□□□□□ -0.37
SYNE2-206ENST00000441438 PMFBP1Q8TBY8 1022 aa12.74□□□□□ -0.37
SYNE2-206ENST00000441438 CCDC93Q567U6 631 aa12.73□□□□□ -0.37
SYNE2-206ENST00000441438 AVENQ9NQS1 362 aaPredicted RBP12.73□□□□□ -0.37
SYNE2-206ENST00000441438 KRT77Q7Z794 578 aa12.73□□□□□ -0.37
SYNE2-206ENST00000441438 DZIP3Q86Y13 1208 aaKnown RBP12.73□□□□□ -0.37
SYNE2-206ENST00000441438 TSR2Q969E8 191 aaKnown RBP12.73□□□□□ -0.37
SYNE2-206ENST00000441438 SUN2Q9UH99 717 aa12.73□□□□□ -0.37
SYNE2-206ENST00000441438 TRIM64CA6NLI5 447 aa12.73□□□□□ -0.37
SYNE2-206ENST00000441438 MARSP56192 900 aaKnown RBP12.73□□□□□ -0.37
SYNE2-206ENST00000441438 CT47A1Q5JQC4 288 aaPredicted RBP12.72□□□□□ -0.37
SYNE2-206ENST00000441438 IQSEC2Q5JU85 1478 aa12.72□□□□□ -0.37
SYNE2-206ENST00000441438 RAVER1Q8IY67 606 aaKnown RBP12.72□□□□□ -0.37
SYNE2-206ENST00000441438 RUNDC1Q96C34 613 aa12.72□□□□□ -0.37
SYNE2-206ENST00000441438 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.72□□□□□ -0.37
SYNE2-206ENST00000441438 DHX29Q7Z478 1369 aaKnown RBP12.71□□□□□ -0.37
SYNE2-206ENST00000441438 WASHC5Q12768 1159 aa12.71□□□□□ -0.37
SYNE2-206ENST00000441438 RNF187Q5TA31 235 aaPredicted RBP12.71□□□□□ -0.37
SYNE2-206ENST00000441438 CHCHD4Q8N4Q1 142 aa12.71□□□□□ -0.37
SYNE2-206ENST00000441438 KIAA1958Q8N8K9 716 aa12.71□□□□□ -0.37
SYNE2-206ENST00000441438 SNRKQ9NRH2 765 aa12.71□□□□□ -0.37
SYNE2-206ENST00000441438 GJA3Q9Y6H8 435 aa12.71□□□□□ -0.37
SYNE2-206ENST00000441438 SETD1BQ9UPS6 1966 aaKnown RBP12.71□□□□□ -0.37
SYNE2-206ENST00000441438 COL6A1P12109 1028 aa12.71□□□□□ -0.38
SYNE2-206ENST00000441438 SKILP12757 684 aa12.71□□□□□ -0.38
SYNE2-206ENST00000441438 ARMC3Q5W041 872 aa12.71□□□□□ -0.38
SYNE2-206ENST00000441438 AS3MTQ9HBK9 375 aa12.71□□□□□ -0.38
SYNE2-206ENST00000441438 CGNQ9P2M7 1197 aaKnown RBP12.71□□□□□ -0.38
SYNE2-206ENST00000441438 RAPGEF3O95398 923 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 ABL2P42684 1182 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 LMNTD2Q8IXW0 634 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 TMEM63CQ9P1W3 806 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 SYCP2LQ5T4T6 812 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 ODF2LQ9ULJ1 636 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 SETD5Q9C0A6 1442 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 PTPRMP28827 1452 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 PLA2R1Q13018 1463 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 ABCD1P33897 745 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 RAD51AP2Q09MP3 1159 aa12.7□□□□□ -0.38
SYNE2-206ENST00000441438 LARP6Q9BRS8 491 aaKnown RBP12.7□□□□□ -0.38
SYNE2-206ENST00000441438 RBP3P10745 1247 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 SUGP1Q8IWZ8 645 aaKnown RBP12.69□□□□□ -0.38
SYNE2-206ENST00000441438 SLF2Q8IX21 1173 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 U3KPZ7 1027 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-206ENST00000441438 ABCC5O15440 1437 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 LMTK3Q96Q04 1460 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 IFRD1O00458 451 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-206ENST00000441438 CTAGE5O15320 804 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 CAPN15O75808 1086 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 VIL1P09327 827 aaKnown RBP12.69□□□□□ -0.38
SYNE2-206ENST00000441438 PZPP20742 1482 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 EFCAB6Q5THR3 1501 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 PRAG1Q86YV5 1406 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 MADDQ8WXG6 1647 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 CD248Q9HCU0 757 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 RRP7BPQ9NSQ0 103 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 LZTS1Q9Y250 596 aa12.69□□□□□ -0.38
SYNE2-206ENST00000441438 FAM160A1Q05DH4 1040 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 ANKRD13DQ6ZTN6 518 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 UBE2Q1Q7Z7E8 422 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 THRAP3Q9Y2W1 955 aaKnown RBP12.68□□□□□ -0.38
SYNE2-206ENST00000441438 TRAPPC8Q9Y2L5 1435 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 ANKRD33BA6NCL7 494 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 KIF1CO43896 1103 aaKnown RBP12.68□□□□□ -0.38
SYNE2-206ENST00000441438 PPFIA3O75145 1194 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 CCDC172P0C7W6 258 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 MLLT3P42568 568 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-206ENST00000441438 CATIPQ7Z7H3 387 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 RELL1Q8IUW5 271 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 TINF2Q9BSI4 451 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 IP6K2Q9UHH9 426 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 TRPC1P48995 793 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 COL19A1Q14993 1142 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 ZNF746Q6NUN9 644 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-206ENST00000441438 GDPD2Q9HCC8 539 aa12.68□□□□□ -0.38
SYNE2-206ENST00000441438 MYO3AQ8NEV4 1616 aa12.67□□□□□ -0.38
SYNE2-206ENST00000441438 RNASEH2AO75792 299 aaKnown RBP12.67□□□□□ -0.38
SYNE2-206ENST00000441438 PAF1Q8N7H5 531 aa12.67□□□□□ -0.38
SYNE2-206ENST00000441438 TAF4BQ92750 862 aa12.67□□□□□ -0.38
SYNE2-206ENST00000441438 RYDENQ9NUL5 291 aaKnown RBP12.67□□□□□ -0.38
SYNE2-206ENST00000441438 ABCC3O15438 1527 aa12.67□□□□□ -0.38
SYNE2-206ENST00000441438 TMCC3Q9ULS5 477 aa12.67□□□□□ -0.38
SYNE2-206ENST00000441438 FOSP01100 380 aaPredicted RBP12.66□□□□□ -0.38
SYNE2-206ENST00000441438 ODR4Q5SWX8 454 aa12.66□□□□□ -0.38
SYNE2-206ENST00000441438 BACH2Q9BYV9 841 aa12.66□□□□□ -0.38
SYNE2-206ENST00000441438 IPO7O95373 1038 aaKnown RBP12.66□□□□□ -0.38
SYNE2-206ENST00000441438 NLRP1Q9C000 1473 aa12.66□□□□□ -0.38
SYNE2-206ENST00000441438 ZNF132P52740 706 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 POLR1AO95602 1720 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-206ENST00000441438 PDGFRBP09619 1106 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 GNALP38405 381 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 HSP90B2PQ58FF3 399 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 IQCF2Q8IXL9 164 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 TRIM52Q96A61 297 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 C8orf48Q96LL4 319 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 IER2Q9BTL4 223 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 DIP2AQ14689 1571 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 RIMS1Q86UR5 1692 aaKnown RBP12.65□□□□□ -0.38
SYNE2-206ENST00000441438 ZBED6P86452 979 aa12.65□□□□□ -0.38
SYNE2-206ENST00000441438 AMPD3Q01432 767 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms