RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-204ENST00000431283 SEC13P55735 322 aa10.05□□□□□ -0.8
PTPN4-204ENST00000431283 ANKIB1Q9P2G1 1089 aa10.05□□□□□ -0.8
PTPN4-204ENST00000431283 IGHA1P01876 353 aa10.04□□□□□ -0.8
PTPN4-204ENST00000431283 EPXP11678 715 aa10.04□□□□□ -0.8
PTPN4-204ENST00000431283 C1orf229Q6ZS94 237 aaPredicted RBP10.04□□□□□ -0.8
PTPN4-204ENST00000431283 PPP1R12CQ9BZL4 782 aa10.04□□□□□ -0.8
PTPN4-204ENST00000431283 AVENQ9NQS1 362 aaPredicted RBP10.04□□□□□ -0.8
PTPN4-204ENST00000431283 C1orf53Q5VUE5 145 aa10.03□□□□□ -0.8
PTPN4-204ENST00000431283 HINFPQ9BQA5 517 aa10.03□□□□□ -0.8
PTPN4-204ENST00000431283 HCN4Q9Y3Q4 1203 aa10.03□□□□□ -0.8
PTPN4-204ENST00000431283 SNRPNP63162 240 aaKnown RBP10.02□□□□□ -0.81
PTPN4-204ENST00000431283 CHMP7Q8WUX9 453 aaPredicted RBP10.02□□□□□ -0.81
PTPN4-204ENST00000431283 LMOD1P29536 600 aaPredicted RBP10.01□□□□□ -0.81
PTPN4-204ENST00000431283 HIRAP54198 1017 aaPredicted RBP10.01□□□□□ -0.81
PTPN4-204ENST00000431283 NEUROD1Q13562 356 aa10.01□□□□□ -0.81
PTPN4-204ENST00000431283 SH3PXD2AQ5TCZ1 1133 aa10.01□□□□□ -0.81
PTPN4-204ENST00000431283 ZNF468Q5VIY5 522 aaPredicted RBP10.01□□□□□ -0.81
PTPN4-204ENST00000431283 DCAF5Q96JK2 942 aa10.01□□□□□ -0.81
PTPN4-204ENST00000431283 BTBD6Q96KE9 485 aa10.01□□□□□ -0.81
PTPN4-204ENST00000431283 PHACTR1Q9C0D0 580 aa10.01□□□□□ -0.81
PTPN4-204ENST00000431283 VRTNQ9H8Y1 702 aa10.01□□□□□ -0.81
PTPN4-204ENST00000431283 EFSO43281 561 aa10□□□□□ -0.81
PTPN4-204ENST00000431283 PCBP4P57723 403 aaKnown RBP10□□□□□ -0.81
PTPN4-204ENST00000431283 GAS2L2Q8NHY3 880 aa10□□□□□ -0.81
PTPN4-204ENST00000431283 SCG3Q8WXD2 468 aaKnown RBP10□□□□□ -0.81
PTPN4-204ENST00000431283 HIF1AQ16665 826 aa9.99□□□□□ -0.81
PTPN4-204ENST00000431283 ALYREFQ86V81 257 aaKnown RBP9.99□□□□□ -0.81
PTPN4-204ENST00000431283 CEP63Q96MT8 703 aa9.99□□□□□ -0.81
PTPN4-204ENST00000431283 ATAD2Q6PL18 1390 aa9.99□□□□□ -0.81
PTPN4-204ENST00000431283 GNB5O14775 395 aa9.98□□□□□ -0.81
PTPN4-204ENST00000431283 ALAS2P22557 587 aa9.98□□□□□ -0.81
PTPN4-204ENST00000431283 STRN4Q9NRL3 753 aa9.98□□□□□ -0.81
PTPN4-204ENST00000431283 DPYDQ12882 1025 aa9.97□□□□□ -0.81
PTPN4-204ENST00000431283 CHSY3Q70JA7 882 aa9.97□□□□□ -0.81
PTPN4-204ENST00000431283 NGLY1Q96IV0 654 aa9.97□□□□□ -0.81
PTPN4-204ENST00000431283 NOP53Q9NZM5 478 aaKnown RBP9.97□□□□□ -0.81
PTPN4-204ENST00000431283 ZNF777Q9ULD5 760 aaPredicted RBP9.97□□□□□ -0.81
PTPN4-204ENST00000431283 FAM196BA6NMK8 535 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L15C9J2P7 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L10C9JJH3 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L13C9JLJ4 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L12C9JPN9 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L11C9JVI0 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L21D6R901 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L18D6R9N7 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L22D6RA61 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L17D6RBQ6 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L19D6RCP7 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L20D6RJB6 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 MSTNO14793 375 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 USP17L24Q0WX57 530 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 PTK7Q13308 1070 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 GRIN2CQ14957 1233 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 CRTC2Q53ET0 693 aaPredicted RBP9.96□□□□□ -0.82
PTPN4-204ENST00000431283 SYT9Q86SS6 491 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 FCHSD1Q86WN1 690 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 ALDH16A1Q8IZ83 802 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 STAG2Q8N3U4 1231 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 BRD7Q9NPI1 651 aa9.96□□□□□ -0.82
PTPN4-204ENST00000431283 DKK1O94907 266 aa9.95□□□□□ -0.82
PTPN4-204ENST00000431283 PLA2G4EQ3MJ16 856 aa9.95□□□□□ -0.82
PTPN4-204ENST00000431283 KANK4Q5T7N3 995 aaPredicted RBP9.95□□□□□ -0.82
PTPN4-204ENST00000431283 ANKMY2Q8IV38 441 aa9.95□□□□□ -0.82
PTPN4-204ENST00000431283 HSH2DQ96JZ2 352 aa9.95□□□□□ -0.82
PTPN4-204ENST00000431283 SUSD3Q96L08 255 aa9.95□□□□□ -0.82
PTPN4-204ENST00000431283 C21orf2O43822 256 aa9.94□□□□□ -0.82
PTPN4-204ENST00000431283 SFSWAPQ12872 951 aaKnown RBP9.94□□□□□ -0.82
PTPN4-204ENST00000431283 POTEAQ6S8J7 498 aa9.94□□□□□ -0.82
PTPN4-204ENST00000431283 C7orf43Q8WVR3 580 aa9.94□□□□□ -0.82
PTPN4-204ENST00000431283 C2orf49Q9BVC5 232 aaPredicted RBP9.94□□□□□ -0.82
PTPN4-204ENST00000431283 KLF15Q9UIH9 416 aa9.94□□□□□ -0.82
PTPN4-204ENST00000431283 HCN2Q9UL51 889 aa9.94□□□□□ -0.82
PTPN4-204ENST00000431283 ELOA3CA0A087WX78 387 aaPredicted RBP9.93□□□□□ -0.82
PTPN4-204ENST00000431283 ELOA3DA6NLF2 546 aaPredicted RBP9.93□□□□□ -0.82
PTPN4-204ENST00000431283 RFX1P22670 979 aa9.93□□□□□ -0.82
PTPN4-204ENST00000431283 DGKGP49619 791 aa9.93□□□□□ -0.82
PTPN4-204ENST00000431283 SPEM2Q0P670 501 aa9.93□□□□□ -0.82
PTPN4-204ENST00000431283 ELOA3BQ3SY89 546 aa9.93□□□□□ -0.82
PTPN4-204ENST00000431283 ELOA3Q8NG57 546 aa9.93□□□□□ -0.82
PTPN4-204ENST00000431283 VTI1AQ96AJ9 217 aa9.93□□□□□ -0.82
PTPN4-204ENST00000431283 KCNH4Q9UQ05 1017 aa9.93□□□□□ -0.82
PTPN4-204ENST00000431283 SIN3BO75182 1162 aa9.92□□□□□ -0.82
PTPN4-204ENST00000431283 LINC00114Q6XXX2 140 aa9.92□□□□□ -0.82
PTPN4-204ENST00000431283 IGFBP4P22692 258 aa9.91□□□□□ -0.82
PTPN4-204ENST00000431283 ZNF280CQ8ND82 737 aa9.91□□□□□ -0.82
PTPN4-204ENST00000431283 LGR5O75473 907 aa9.9□□□□□ -0.82
PTPN4-204ENST00000431283 TYRO3Q06418 890 aa9.9□□□□□ -0.82
PTPN4-204ENST00000431283 RTN1Q16799 776 aa9.9□□□□□ -0.82
PTPN4-204ENST00000431283 FAM200AQ8TCP9 573 aa9.9□□□□□ -0.82
PTPN4-204ENST00000431283 SLC30A3Q99726 388 aa9.9□□□□□ -0.82
PTPN4-204ENST00000431283 BTLAQ7Z6A9 289 aa9.89□□□□□ -0.83
PTPN4-204ENST00000431283 SPOCK3Q9BQ16 436 aa9.89□□□□□ -0.83
PTPN4-204ENST00000431283 SUV39H2Q9H5I1 410 aa9.89□□□□□ -0.83
PTPN4-204ENST00000431283 SPDYE3A6NKU9 549 aa9.88□□□□□ -0.83
PTPN4-204ENST00000431283 HOXB4P17483 251 aaPredicted RBP9.88□□□□□ -0.83
PTPN4-204ENST00000431283 COL8A1P27658 744 aa9.88□□□□□ -0.83
PTPN4-204ENST00000431283 KCNQ4P56696 695 aa9.88□□□□□ -0.83
PTPN4-204ENST00000431283 RAB44Q7Z6P3 723 aaPredicted RBP9.88□□□□□ -0.83
PTPN4-204ENST00000431283 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.88□□□□□ -0.832e-6■■■■■ 96.1
PTPN4-204ENST00000431283 KRBA1A5PL33 1030 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms