RNA–Protein interactions for RNA: ENST00000429738.1

MRPL28-203, Transcript of mitochondrial ribosomal protein L28, human

TSL 2 BASIC

Gene MRPL28, Length 310 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL28-203	ENST00000429738	TBC1D2B	Q9UPU7	963 aa		23.5	■■□□□ 1.35
MRPL28-203	ENST00000429738	C21orf2	O43822	256 aa		23.49	■■□□□ 1.35
MRPL28-203	ENST00000429738	ERFE	Q4G0M1	354 aa		23.49	■■□□□ 1.35
MRPL28-203	ENST00000429738	PRR5L	Q6MZQ0	368 aa		23.49	■■□□□ 1.35
MRPL28-203	ENST00000429738	PNN	Q9H307	717 aa	Known RBP	23.49	■■□□□ 1.35
MRPL28-203	ENST00000429738	LAMB4	A4D0S4	1761 aa		23.48	■■□□□ 1.35
MRPL28-203	ENST00000429738	CAMTA2	O94983	1202 aa		23.48	■■□□□ 1.35
MRPL28-203	ENST00000429738	TIAM2	Q8IVF5	1701 aa		23.47	■■□□□ 1.35
MRPL28-203	ENST00000429738	ANKRD31	Q8N7Z5	1873 aa		23.47	■■□□□ 1.35
MRPL28-203	ENST00000429738	CCDC24	Q8N4L8	307 aa		23.47	■■□□□ 1.35
MRPL28-203	ENST00000429738	ZNF219	Q9P2Y4	722 aa	Predicted RBP	23.47	■■□□□ 1.35
MRPL28-203	ENST00000429738	ZNF330	Q9Y3S2	320 aa	Predicted RBP	23.47	■■□□□ 1.35
MRPL28-203	ENST00000429738	HSPA1A	P0DMV8	641 aa	Known RBP	23.46	■■□□□ 1.35
MRPL28-203	ENST00000429738	HSPA1B	P0DMV9	641 aa	Known RBP	23.46	■■□□□ 1.35
MRPL28-203	ENST00000429738	SETDB2	Q96T68	719 aa		23.46	■■□□□ 1.35
MRPL28-203	ENST00000429738	MYBBP1A	Q9BQG0	1328 aa	Known RBP	23.46	■■□□□ 1.35
MRPL28-203	ENST00000429738	DICER1	Q9UPY3	1922 aa	Known RBP	23.46	■■□□□ 1.35
MRPL28-203	ENST00000429738	CAPN15	O75808	1086 aa		23.45	■■□□□ 1.34
MRPL28-203	ENST00000429738	NPM2	Q86SE8	214 aa	Known RBP	23.45	■■□□□ 1.34
MRPL28-203	ENST00000429738	PNISR	Q8TF01	805 aa	Known RBP	23.45	■■□□□ 1.34
MRPL28-203	ENST00000429738	MIS18A	Q9NYP9	233 aa		23.45	■■□□□ 1.34
MRPL28-203	ENST00000429738	FER1L6	Q2WGJ9	1857 aa		23.45	■■□□□ 1.34
MRPL28-203	ENST00000429738	LTBP3	Q9NS15	1303 aa		23.44	■■□□□ 1.34
MRPL28-203	ENST00000429738	MAPK8IP3	Q9UPT6	1336 aa		23.44	■■□□□ 1.34
MRPL28-203	ENST00000429738	PIP4K2A	P48426	406 aa	Predicted RBP	23.44	■■□□□ 1.34
MRPL28-203	ENST00000429738	DZIP3	Q86Y13	1208 aa	Known RBP	23.44	■■□□□ 1.34
MRPL28-203	ENST00000429738	CNKSR1	Q969H4	720 aa		23.44	■■□□□ 1.34
MRPL28-203	ENST00000429738	NBPF26	B4DH59	902 aa		23.43	■■□□□ 1.34
MRPL28-203	ENST00000429738	STYK1	Q6J9G0	422 aa		23.43	■■□□□ 1.34
MRPL28-203	ENST00000429738	NBPF10	Q6P3W6	841 aa	Known RBP	23.43	■■□□□ 1.34
MRPL28-203	ENST00000429738	NBPF15	Q8N660	670 aa		23.43	■■□□□ 1.34
MRPL28-203	ENST00000429738	TAOK3	Q9H2K8	898 aa		23.43	■■□□□ 1.34
MRPL28-203	ENST00000429738	CNBD1	Q8NA66	436 aa		23.42	■■□□□ 1.34
MRPL28-203	ENST00000429738	THUMPD2	Q9BTF0	503 aa	Known RBP	23.42	■■□□□ 1.34
MRPL28-203	ENST00000429738	NPHP1	O15259	732 aa		23.41	■■□□□ 1.34
MRPL28-203	ENST00000429738	SRGN	P10124	158 aa		23.41	■■□□□ 1.34
MRPL28-203	ENST00000429738	ST5	P78524	1137 aa		23.41	■■□□□ 1.34
MRPL28-203	ENST00000429738	CHADL	Q6NUI6	762 aa		23.41	■■□□□ 1.34
MRPL28-203	ENST00000429738	EIF4A1	P60842	406 aa	Known RBP	23.4	■■□□□ 1.34
MRPL28-203	ENST00000429738	SOGA3	Q5TF21	947 aa		23.4	■■□□□ 1.34
MRPL28-203	ENST00000429738	CLEC4G	Q6UXB4	293 aa		23.4	■■□□□ 1.34
MRPL28-203	ENST00000429738	MASTL	Q96GX5	879 aa		23.4	■■□□□ 1.34
MRPL28-203	ENST00000429738	COL11A2	P13942	1736 aa	Predicted RBP	23.39	■■□□□ 1.34
MRPL28-203	ENST00000429738	SLX4	Q8IY92	1834 aa		23.39	■■□□□ 1.33
MRPL28-203	ENST00000429738	RGL2	O15211	777 aa		23.39	■■□□□ 1.33
MRPL28-203	ENST00000429738	DDN	O94850	711 aa	Predicted RBP	23.39	■■□□□ 1.33
MRPL28-203	ENST00000429738	PRPF40B	Q6NWY9	871 aa	Known RBP	23.39	■■□□□ 1.33
MRPL28-203	ENST00000429738	CREBZF	Q9NS37	354 aa		23.39	■■□□□ 1.33
MRPL28-203	ENST00000429738	TMPO	P42166	694 aa	Known RBP	23.37	■■□□□ 1.33
MRPL28-203	ENST00000429738	RIPK4	P57078	832 aa		23.37	■■□□□ 1.33
MRPL28-203	ENST00000429738	POTEI	P0CG38	1075 aa		23.35	■■□□□ 1.33
MRPL28-203	ENST00000429738	POTEJ	P0CG39	1038 aa		23.35	■■□□□ 1.33
MRPL28-203	ENST00000429738	C7orf43	Q8WVR3	580 aa		23.35	■■□□□ 1.33
MRPL28-203	ENST00000429738	PRKRIP1	Q9H875	184 aa	Predicted RBP	23.35	■■□□□ 1.33
MRPL28-203	ENST00000429738	MKRN1	Q9UHC7	482 aa	Known RBP	23.34	■■□□□ 1.33
MRPL28-203	ENST00000429738	ZNF652	Q9Y2D9	606 aa		23.34	■■□□□ 1.33
MRPL28-203	ENST00000429738	IQCA1L	A6NCM1	817 aa		23.33	■■□□□ 1.33
MRPL28-203	ENST00000429738	NBPF5P	Q86XG9	351 aa	Predicted RBP	23.33	■■□□□ 1.33
MRPL28-203	ENST00000429738	BABAM1	Q9NWV8	329 aa		23.33	■■□□□ 1.33
MRPL28-203	ENST00000429738	NUP98	P52948	1817 aa		23.32	■■□□□ 1.32
MRPL28-203	ENST00000429738	LMOD3	Q0VAK6	560 aa		23.32	■■□□□ 1.32
MRPL28-203	ENST00000429738	L3MBTL3	Q96JM7	780 aa	Predicted RBP	23.32	■■□□□ 1.32
MRPL28-203	ENST00000429738	CACNA1S	Q13698	1873 aa		23.32	■■□□□ 1.32
MRPL28-203	ENST00000429738	KLRG2	A4D1S0	409 aa	Predicted RBP	23.31	■■□□□ 1.32
MRPL28-203	ENST00000429738	NPR1	P16066	1061 aa		23.31	■■□□□ 1.32
MRPL28-203	ENST00000429738	CCDC93	Q567U6	631 aa		23.31	■■□□□ 1.32
MRPL28-203	ENST00000429738	LDHD	Q86WU2	507 aa		23.31	■■□□□ 1.32
MRPL28-203	ENST00000429738	TAF1D	Q9H5J8	278 aa	Predicted RBP	23.31	■■□□□ 1.32
MRPL28-203	ENST00000429738	TSPYL4	Q9UJ04	414 aa		23.31	■■□□□ 1.32
MRPL28-203	ENST00000429738	ARFGEF2	Q9Y6D5	1785 aa		23.31	■■□□□ 1.32
MRPL28-203	ENST00000429738	HLF	Q16534	295 aa		23.3	■■□□□ 1.32
MRPL28-203	ENST00000429738	TPTE2	Q6XPS3	522 aa		23.3	■■□□□ 1.32
MRPL28-203	ENST00000429738	CCDC146	Q8IYE0	955 aa		23.3	■■□□□ 1.32
MRPL28-203	ENST00000429738	RUNDC1	Q96C34	613 aa		23.3	■■□□□ 1.32
MRPL28-203	ENST00000429738	PASK	Q96RG2	1323 aa		23.3	■■□□□ 1.32
MRPL28-203	ENST00000429738	ADAMTS8	Q9UP79	889 aa		23.29	■■□□□ 1.32
MRPL28-203	ENST00000429738	NIP7	Q9Y221	180 aa	Known RBP eCLIP	23.29	■■□□□ 1.32
MRPL28-203	ENST00000429738	ERBB4	Q15303	1308 aa		23.29	■■□□□ 1.32
MRPL28-203	ENST00000429738	SCN4A	P35499	1836 aa		23.29	■■□□□ 1.32
MRPL28-203	ENST00000429738	ERVV-1	B6SEH8	477 aa		23.28	■■□□□ 1.32
MRPL28-203	ENST00000429738	FKBP4	Q02790	459 aa	Known RBP eCLIP	23.28	■■□□□ 1.32
MRPL28-203	ENST00000429738	WDR43	Q15061	677 aa	Known RBP eCLIP	23.28	■■□□□ 1.32
MRPL28-203	ENST00000429738	RRP7A	Q9Y3A4	280 aa	Known RBP	23.28	■■□□□ 1.32
MRPL28-203	ENST00000429738	CNTNAP1	P78357	1384 aa		23.27	■■□□□ 1.32
MRPL28-203	ENST00000429738	TRIM35	Q9UPQ4	493 aa		23.27	■■□□□ 1.32
MRPL28-203	ENST00000429738	MAP3K15	Q6ZN16	1313 aa		23.27	■■□□□ 1.32
MRPL28-203	ENST00000429738	ITGBL1	O95965	494 aa	Predicted RBP	23.26	■■□□□ 1.31
MRPL28-203	ENST00000429738	TTLL7	Q6ZT98	887 aa		23.26	■■□□□ 1.31
MRPL28-203	ENST00000429738	LRP10	Q7Z4F1	713 aa		23.26	■■□□□ 1.31
MRPL28-203	ENST00000429738	RTKN2	Q8IZC4	609 aa		23.26	■■□□□ 1.31
MRPL28-203	ENST00000429738	ZNF277	Q9NRM2	450 aa	Predicted RBP	23.26	■■□□□ 1.31
MRPL28-203	ENST00000429738	NGEF	Q8N5V2	710 aa		23.25	■■□□□ 1.31
MRPL28-203	ENST00000429738	TMEM88B	A6NKF7	163 aa		23.24	■■□□□ 1.31
MRPL28-203	ENST00000429738	FOXN1	O15353	648 aa		23.24	■■□□□ 1.31
MRPL28-203	ENST00000429738	MYL6B	P14649	208 aa		23.24	■■□□□ 1.31
MRPL28-203	ENST00000429738	ALDH1B1	P30837	517 aa		23.24	■■□□□ 1.31
MRPL28-203	ENST00000429738	PDIA6	Q15084	440 aa		23.24	■■□□□ 1.31
MRPL28-203	ENST00000429738	NEUROD2	Q15784	382 aa		23.24	■■□□□ 1.31
MRPL28-203	ENST00000429738	HACL1	Q9UJ83	578 aa		23.24	■■□□□ 1.31
MRPL28-203	ENST00000429738	CHL1	O00533	1208 aa		23.23	■■□□□ 1.31

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms