RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 APBB1O00213 710 aa12.06□□□□□ -0.48
HMGCLL1-206ENST00000428842 ZBTB7BO15156 539 aaPredicted RBP12.06□□□□□ -0.48
HMGCLL1-206ENST00000428842 HOXB7P09629 217 aa12.06□□□□□ -0.48
HMGCLL1-206ENST00000428842 PDE3AQ14432 1141 aa12.06□□□□□ -0.48
HMGCLL1-206ENST00000428842 ZNF827Q17R98 1081 aa12.06□□□□□ -0.48
HMGCLL1-206ENST00000428842 DNAAF4Q8WXU2 420 aa12.06□□□□□ -0.48
HMGCLL1-206ENST00000428842 CCDC136Q96JN2 1154 aa12.06□□□□□ -0.48
HMGCLL1-206ENST00000428842 CCDC87Q9NVE4 849 aa12.06□□□□□ -0.48
HMGCLL1-206ENST00000428842 HYPKQ9NX55 129 aa12.06□□□□□ -0.48
HMGCLL1-206ENST00000428842 LAMB4A4D0S4 1761 aa12.05□□□□□ -0.48
HMGCLL1-206ENST00000428842 BEND3Q5T5X7 828 aa12.05□□□□□ -0.48
HMGCLL1-206ENST00000428842 ILDR2Q71H61 639 aa12.05□□□□□ -0.48
HMGCLL1-206ENST00000428842 KSR2Q6VAB6 950 aa12.05□□□□□ -0.48
HMGCLL1-206ENST00000428842 USP44Q9H0E7 712 aa12.05□□□□□ -0.48
HMGCLL1-206ENST00000428842 BRPF1P55201 1214 aaPredicted RBP12.04□□□□□ -0.48
HMGCLL1-206ENST00000428842 DZIP3Q86Y13 1208 aaKnown RBP12.04□□□□□ -0.48
HMGCLL1-206ENST00000428842 SIRT2Q8IXJ6 389 aa12.04□□□□□ -0.48
HMGCLL1-206ENST00000428842 ANO8Q9HCE9 1232 aaPredicted RBP12.04□□□□□ -0.48
HMGCLL1-206ENST00000428842 VSIG10Q8N0Z9 540 aa12.03□□□□□ -0.48
HMGCLL1-206ENST00000428842 API5Q9BZZ5 524 aaKnown RBP12.03□□□□□ -0.48
HMGCLL1-206ENST00000428842 PTPRCP08575 1304 aa12.03□□□□□ -0.48
HMGCLL1-206ENST00000428842 SLC51AQ86UW1 340 aa12.03□□□□□ -0.48
HMGCLL1-206ENST00000428842 ZBTB40Q9NUA8 1239 aa12.03□□□□□ -0.48
HMGCLL1-206ENST00000428842 TAF1LQ8IZX4 1826 aa12.03□□□□□ -0.48
HMGCLL1-206ENST00000428842 MSH5O43196 834 aa12.02□□□□□ -0.48
HMGCLL1-206ENST00000428842 EIF5P55010 431 aaKnown RBP12.02□□□□□ -0.48
HMGCLL1-206ENST00000428842 USPL1Q5W0Q7 1092 aa12.02□□□□□ -0.48
HMGCLL1-206ENST00000428842 KLHDC4Q8TBB5 520 aa12.02□□□□□ -0.48
HMGCLL1-206ENST00000428842 SMARCC1Q92922 1105 aaPredicted RBP12.02□□□□□ -0.48
HMGCLL1-206ENST00000428842 FAM89AQ96GI7 184 aa12.02□□□□□ -0.48
HMGCLL1-206ENST00000428842 PPP4R2Q9NY27 417 aa12.02□□□□□ -0.48
HMGCLL1-206ENST00000428842 LRRFIP2Q9Y608 721 aaKnown RBP12.02□□□□□ -0.48
HMGCLL1-206ENST00000428842 CACNA1FO60840 1977 aa12.02□□□□□ -0.48
HMGCLL1-206ENST00000428842 ARFGEF2Q9Y6D5 1785 aa12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 EPHA10Q5JZY3 1008 aa12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 MSL1Q68DK7 614 aa12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 INTS3Q68E01 1043 aaKnown RBP12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 UBE3BQ7Z3V4 1068 aa12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 ARHGAP45Q92619 1136 aa12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 ARHGEF1Q92888 912 aaKnown RBP12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 ANP32EQ9BTT0 268 aa12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 LY75O60449 1722 aa12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 COL5A3P25940 1745 aaPredicted RBP12.02□□□□□ -0.49
HMGCLL1-206ENST00000428842 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.01□□□□□ -0.49
HMGCLL1-206ENST00000428842 NUTM1Q86Y26 1132 aa12.01□□□□□ -0.49
HMGCLL1-206ENST00000428842 SRCIN1Q9C0H9 1055 aa12.01□□□□□ -0.49
HMGCLL1-206ENST00000428842 UBN2Q6ZU65 1347 aa12.01□□□□□ -0.49
HMGCLL1-206ENST00000428842 PNMA6EA0A0J9YXQ4 647 aa12.01□□□□□ -0.49
HMGCLL1-206ENST00000428842 TNS1Q9HBL0 1735 aaKnown RBP12□□□□□ -0.49
HMGCLL1-206ENST00000428842 NEURL1BA8MQ27 555 aa12□□□□□ -0.49
HMGCLL1-206ENST00000428842 KAZALD1Q96I82 304 aa12□□□□□ -0.49
HMGCLL1-206ENST00000428842 COL15A1P39059 1388 aa12□□□□□ -0.49
HMGCLL1-206ENST00000428842 PLBD2Q8NHP8 589 aa12□□□□□ -0.49
HMGCLL1-206ENST00000428842 AK7Q96M32 723 aa12□□□□□ -0.49
HMGCLL1-206ENST00000428842 METTL22Q9BUU2 404 aaPredicted RBP12□□□□□ -0.49
HMGCLL1-206ENST00000428842 BCL2L12Q9HB09 334 aa12□□□□□ -0.49
HMGCLL1-206ENST00000428842 DDX19BQ9UMR2 479 aa12□□□□□ -0.49
HMGCLL1-206ENST00000428842 AFDNP55196 1824 aaKnown RBP11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 A0A087WZG4 1122 aa11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 C9orf78Q9NZ63 289 aaPredicted RBP11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 TFCP2L1Q9NZI6 479 aa11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 C4BP0C0L5 1744 aa11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 SOS1Q07889 1333 aaPredicted RBP11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 NUP98P52948 1817 aa11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 CAMTA2O94983 1202 aa11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 TBC1D9BQ66K14 1250 aa11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 NPM2Q86SE8 214 aaKnown RBP11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 SUCLG2Q96I99 432 aa11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 TEX13AQ9BXU3 409 aaPredicted RBP11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 MAP3K15Q6ZN16 1313 aa11.99□□□□□ -0.49
HMGCLL1-206ENST00000428842 IL6STP40189 918 aaPredicted RBP11.98□□□□□ -0.49
HMGCLL1-206ENST00000428842 GCKRQ14397 625 aa11.98□□□□□ -0.49
HMGCLL1-206ENST00000428842 KIF6Q6ZMV9 814 aa11.98□□□□□ -0.49
HMGCLL1-206ENST00000428842 CAMKK2Q96RR4 588 aa11.98□□□□□ -0.49
HMGCLL1-206ENST00000428842 NUP188Q5SRE5 1749 aa11.98□□□□□ -0.49
HMGCLL1-206ENST00000428842 DDX58O95786 925 aaKnown RBP11.98□□□□□ -0.49
HMGCLL1-206ENST00000428842 PA2G4Q9UQ80 394 aaKnown RBP11.98□□□□□ -0.49
HMGCLL1-206ENST00000428842 RTCBQ9Y3I0 505 aaKnown RBP11.98□□□□□ -0.49
HMGCLL1-206ENST00000428842 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.98□□□□□ -0.49
HMGCLL1-206ENST00000428842 HCLS1P14317 486 aaPredicted RBP11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 BICC1Q9H694 974 aaKnown RBP11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 WWC3Q9ULE0 1092 aa11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 SMARCA5O60264 1052 aaPredicted RBP11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 UBTFL1P0CB47 393 aaPredicted RBP11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 CCT4P50991 539 aaKnown RBP11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 SUSD4Q5VX71 490 aa11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 LINS1Q8NG48 757 aa11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 NIP7Q9Y221 180 aaKnown RBP eCLIP11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 EXOC6BQ9Y2D4 811 aa11.97□□□□□ -0.49
HMGCLL1-206ENST00000428842 TAF1P21675 1872 aa11.96□□□□□ -0.49
HMGCLL1-206ENST00000428842 GIGYF2Q6Y7W6 1299 aaKnown RBP11.96□□□□□ -0.49
HMGCLL1-206ENST00000428842 C3orf67Q6ZVT6 689 aa11.96□□□□□ -0.49
HMGCLL1-206ENST00000428842 COL23A1Q86Y22 540 aaPredicted RBP11.96□□□□□ -0.49
HMGCLL1-206ENST00000428842 SIL1Q9H173 461 aa11.96□□□□□ -0.49
HMGCLL1-206ENST00000428842 CHMP3Q9Y3E7 222 aa11.96□□□□□ -0.49
HMGCLL1-206ENST00000428842 GRM8O00222 908 aa11.96□□□□□ -0.5
HMGCLL1-206ENST00000428842 RPS6KA4O75676 772 aa11.96□□□□□ -0.5
HMGCLL1-206ENST00000428842 RFC4P35249 363 aa11.96□□□□□ -0.5
HMGCLL1-206ENST00000428842 NEXNQ0ZGT2 675 aa11.96□□□□□ -0.5
HMGCLL1-206ENST00000428842 TCIRG1Q13488 830 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms