RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 SRP68Q9UHB9 627 aaKnown RBP11.67□□□□□ -0.54
HDAC1-202ENST00000428704 SPG7Q9UQ90 795 aa11.67□□□□□ -0.54
HDAC1-202ENST00000428704 SBF1O95248 1867 aa11.67□□□□□ -0.54
HDAC1-202ENST00000428704 RASSF10A6NK89 507 aa11.66□□□□□ -0.54
HDAC1-202ENST00000428704 DDNO94850 711 aaPredicted RBP11.66□□□□□ -0.54
HDAC1-202ENST00000428704 TIE1P35590 1138 aa11.66□□□□□ -0.54
HDAC1-202ENST00000428704 TTLL6Q8N841 843 aa11.66□□□□□ -0.54
HDAC1-202ENST00000428704 POLKQ9UBT6 870 aa11.66□□□□□ -0.54
HDAC1-202ENST00000428704 TIAM2Q8IVF5 1701 aa11.66□□□□□ -0.54
HDAC1-202ENST00000428704 KDRP35968 1356 aa11.66□□□□□ -0.54
HDAC1-202ENST00000428704 IQCA1LA6NCM1 817 aa11.65□□□□□ -0.54
HDAC1-202ENST00000428704 POLRMTO00411 1230 aaKnown RBP11.65□□□□□ -0.54
HDAC1-202ENST00000428704 MCOLN1Q9GZU1 580 aa11.65□□□□□ -0.54
HDAC1-202ENST00000428704 ABT1Q9ULW3 272 aaKnown RBP11.65□□□□□ -0.54
HDAC1-202ENST00000428704 ITGB4P16144 1822 aa11.65□□□□□ -0.55
HDAC1-202ENST00000428704 USP42Q9H9J4 1324 aaKnown RBP11.64□□□□□ -0.55
HDAC1-202ENST00000428704 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.64□□□□□ -0.55
HDAC1-202ENST00000428704 PRPF38BQ5VTL8 546 aaKnown RBP11.64□□□□□ -0.55
HDAC1-202ENST00000428704 ZFP91Q96JP5 570 aaPredicted RBP11.64□□□□□ -0.55
HDAC1-202ENST00000428704 SLC4A9Q96Q91 983 aa11.64□□□□□ -0.55
HDAC1-202ENST00000428704 PPM1GO15355 546 aaPredicted RBP11.63□□□□□ -0.55
HDAC1-202ENST00000428704 PER1O15534 1290 aaPredicted RBP11.63□□□□□ -0.55
HDAC1-202ENST00000428704 ITGBL1O95965 494 aaPredicted RBP11.63□□□□□ -0.55
HDAC1-202ENST00000428704 TNNT2P45379 298 aaPredicted RBP11.63□□□□□ -0.55
HDAC1-202ENST00000428704 EAPPQ56P03 285 aaPredicted RBP11.63□□□□□ -0.55
HDAC1-202ENST00000428704 PAXIP1Q6ZW49 1069 aaPredicted RBP11.63□□□□□ -0.55
HDAC1-202ENST00000428704 PRKRIP1Q9H875 184 aaPredicted RBP11.63□□□□□ -0.55
HDAC1-202ENST00000428704 TNRC18O15417 2968 aaPredicted RBP11.62□□□□□ -0.55
HDAC1-202ENST00000428704 GRM1Q13255 1194 aa11.62□□□□□ -0.55
HDAC1-202ENST00000428704 C2CD5Q86YS7 1000 aa11.62□□□□□ -0.55
HDAC1-202ENST00000428704 DCBLD2Q96PD2 775 aa11.62□□□□□ -0.55
HDAC1-202ENST00000428704 TMEM106CQ9BVX2 250 aa11.62□□□□□ -0.55
HDAC1-202ENST00000428704 TAF1DQ9H5J8 278 aaPredicted RBP11.62□□□□□ -0.55
HDAC1-202ENST00000428704 BMP2KQ9NSY1 1161 aaPredicted RBP11.62□□□□□ -0.55
HDAC1-202ENST00000428704 TSKSQ9UJT2 592 aa11.62□□□□□ -0.55
HDAC1-202ENST00000428704 TTLL13PA6NNM8 815 aa11.61□□□□□ -0.55
HDAC1-202ENST00000428704 H0YIN7 160 aa11.61□□□□□ -0.55
HDAC1-202ENST00000428704 PHKG2P15735 406 aa11.61□□□□□ -0.55
HDAC1-202ENST00000428704 TM4SF1P30408 202 aa11.61□□□□□ -0.55
HDAC1-202ENST00000428704 EIF4A2Q14240 407 aaKnown RBP11.61□□□□□ -0.55
HDAC1-202ENST00000428704 IFNL2Q8IZJ0 200 aa11.61□□□□□ -0.55
HDAC1-202ENST00000428704 KNSTRNQ9Y448 316 aa11.61□□□□□ -0.55
HDAC1-202ENST00000428704 PDE4DIPQ5VU43 2346 aa11.61□□□□□ -0.55
HDAC1-202ENST00000428704 VIRMAQ69YN4 1812 aaKnown RBP11.6□□□□□ -0.55
HDAC1-202ENST00000428704 ZPR1O75312 459 aa11.6□□□□□ -0.55
HDAC1-202ENST00000428704 ECE1P42892 770 aa11.6□□□□□ -0.55
HDAC1-202ENST00000428704 CRKLP46109 303 aaKnown RBP11.6□□□□□ -0.55
HDAC1-202ENST00000428704 DGKZQ13574 1117 aa11.6□□□□□ -0.55
HDAC1-202ENST00000428704 ASTLQ6HA08 431 aaPredicted RBP11.6□□□□□ -0.55
HDAC1-202ENST00000428704 MORC1Q86VD1 984 aa11.6□□□□□ -0.55
HDAC1-202ENST00000428704 CAPNS2Q96L46 248 aa11.6□□□□□ -0.55
HDAC1-202ENST00000428704 EYA1Q99502 592 aa11.6□□□□□ -0.55
HDAC1-202ENST00000428704 C21orf2O43822 256 aa11.59□□□□□ -0.55
HDAC1-202ENST00000428704 USPL1Q5W0Q7 1092 aa11.59□□□□□ -0.55
HDAC1-202ENST00000428704 GPR101Q96P66 508 aaPredicted RBP11.59□□□□□ -0.55
HDAC1-202ENST00000428704 TAOK3Q9H2K8 898 aa11.59□□□□□ -0.55
HDAC1-202ENST00000428704 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.59□□□□□ -0.553e-7■□□□□ 8.6
HDAC1-202ENST00000428704 COL3A1P02461 1466 aaPredicted RBP11.58□□□□□ -0.56
HDAC1-202ENST00000428704 NPC1L1Q9UHC9 1359 aa11.58□□□□□ -0.56
HDAC1-202ENST00000428704 STK25O00506 426 aa11.58□□□□□ -0.56
HDAC1-202ENST00000428704 ATMINO43313 823 aaPredicted RBP11.58□□□□□ -0.56
HDAC1-202ENST00000428704 CNTROBQ8N137 903 aa11.58□□□□□ -0.56
HDAC1-202ENST00000428704 ZNF622Q969S3 477 aaKnown RBP eCLIP11.58□□□□□ -0.566e-16■□□□□ 9.3
HDAC1-202ENST00000428704 L3MBTL3Q96JM7 780 aaPredicted RBP11.58□□□□□ -0.56
HDAC1-202ENST00000428704 PTCD1O75127 700 aaKnown RBP11.57□□□□□ -0.56
HDAC1-202ENST00000428704 SERPINB2P05120 415 aa11.57□□□□□ -0.56
HDAC1-202ENST00000428704 SOX10P56693 466 aa11.57□□□□□ -0.56
HDAC1-202ENST00000428704 NFIXQ14938 502 aa11.57□□□□□ -0.56
HDAC1-202ENST00000428704 MAP1SQ66K74 1059 aaPredicted RBP11.57□□□□□ -0.56
HDAC1-202ENST00000428704 CYP4F22Q6NT55 531 aa11.57□□□□□ -0.56
HDAC1-202ENST00000428704 HS6ST3Q8IZP7 471 aa11.57□□□□□ -0.56
HDAC1-202ENST00000428704 HACL1Q9UJ83 578 aa11.57□□□□□ -0.56
HDAC1-202ENST00000428704 LTBP3Q9NS15 1303 aa11.57□□□□□ -0.56
HDAC1-202ENST00000428704 ERVV-2B6SEH9 535 aa11.56□□□□□ -0.56
HDAC1-202ENST00000428704 CA12O43570 354 aa11.56□□□□□ -0.56
HDAC1-202ENST00000428704 EPHX2P34913 555 aa11.56□□□□□ -0.56
HDAC1-202ENST00000428704 PNMA8AQ86V59 439 aaPredicted RBP11.56□□□□□ -0.56
HDAC1-202ENST00000428704 ATN1P54259 1190 aaPredicted RBP11.55□□□□□ -0.56
HDAC1-202ENST00000428704 CC2D1BQ5T0F9 858 aaKnown RBP11.55□□□□□ -0.56
HDAC1-202ENST00000428704 DDX21Q9NR30 783 aaKnown RBP eCLIP11.55□□□□□ -0.56
HDAC1-202ENST00000428704 STK24Q9Y6E0 443 aa11.55□□□□□ -0.56
HDAC1-202ENST00000428704 COL5A3P25940 1745 aaPredicted RBP11.55□□□□□ -0.56
HDAC1-202ENST00000428704 CARMIL3Q8ND23 1372 aa11.54□□□□□ -0.56
HDAC1-202ENST00000428704 CABP4P57796 275 aa11.54□□□□□ -0.56
HDAC1-202ENST00000428704 AEBP1Q8IUX7 1158 aa11.54□□□□□ -0.56
HDAC1-202ENST00000428704 ZNF831Q5JPB2 1677 aa11.54□□□□□ -0.56
HDAC1-202ENST00000428704 SCN11AQ9UI33 1791 aa11.54□□□□□ -0.56
HDAC1-202ENST00000428704 AOC2O75106 756 aa11.53□□□□□ -0.56
HDAC1-202ENST00000428704 IL13P35225 146 aa11.53□□□□□ -0.56
HDAC1-202ENST00000428704 MAP2K2P36507 400 aa11.53□□□□□ -0.56
HDAC1-202ENST00000428704 INTS5Q6P9B9 1019 aaKnown RBP11.53□□□□□ -0.56
HDAC1-202ENST00000428704 TRIM35Q9UPQ4 493 aa11.53□□□□□ -0.56
HDAC1-202ENST00000428704 THSD7BQ9C0I4 1608 aa11.53□□□□□ -0.56
HDAC1-202ENST00000428704 ADAMTS7Q9UKP4 1686 aa11.52□□□□□ -0.56
HDAC1-202ENST00000428704 HSP90AB1P08238 724 aaKnown RBP11.52□□□□□ -0.57
HDAC1-202ENST00000428704 MTHFSP49914 203 aa11.52□□□□□ -0.57
HDAC1-202ENST00000428704 GCC1Q96CN9 775 aa11.52□□□□□ -0.57
HDAC1-202ENST00000428704 PDZRN3Q9UPQ7 1066 aa11.52□□□□□ -0.57
HDAC1-202ENST00000428704 RNF123Q5XPI4 1314 aa11.52□□□□□ -0.57
HDAC1-202ENST00000428704 ZNF541Q9H0D2 1346 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms