RNA–Protein interactions for RNA: ENST00000427778.1

LINC00963-204, long intergenic non-protein coding RNA 963, human

TSL 2

Gene LINC00963, Length 382 nt, Biotype lincRNA, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00963-204	ENST00000427778	SOS1	Q07889	1333 aa	Predicted RBP	11.68	□□□□□ -0.54
LINC00963-204	ENST00000427778	SLC34A2	O95436	690 aa		11.68	□□□□□ -0.54
LINC00963-204	ENST00000427778	HTRA3	P83110	453 aa		11.68	□□□□□ -0.54
LINC00963-204	ENST00000427778	TRAPPC3L	Q5T215	181 aa		11.68	□□□□□ -0.54
LINC00963-204	ENST00000427778	MCM10	Q7L590	875 aa		11.68	□□□□□ -0.54
LINC00963-204	ENST00000427778	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.68	□□□□□ -0.54
LINC00963-204	ENST00000427778	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.68	□□□□□ -0.54
LINC00963-204	ENST00000427778	USP42	Q9H9J4	1324 aa	Known RBP	11.67	□□□□□ -0.54
LINC00963-204	ENST00000427778	BTBD11	A6QL63	1104 aa		11.67	□□□□□ -0.54
LINC00963-204	ENST00000427778	SMIM5	Q71RC9	77 aa		11.67	□□□□□ -0.54
LINC00963-204	ENST00000427778	RBM46	Q8TBY0	533 aa	Known RBP	11.67	□□□□□ -0.54
LINC00963-204	ENST00000427778	ARHGEF1	Q92888	912 aa	Known RBP	11.67	□□□□□ -0.54
LINC00963-204	ENST00000427778	FMNL2	Q96PY5	1086 aa		11.67	□□□□□ -0.54
LINC00963-204	ENST00000427778	NMRK2	Q9NPI5	230 aa		11.67	□□□□□ -0.54
LINC00963-204	ENST00000427778	BCOR	Q6W2J9	1755 aa		11.67	□□□□□ -0.54
LINC00963-204	ENST00000427778	PXDNL	A1KZ92	1463 aa		11.66	□□□□□ -0.54
LINC00963-204	ENST00000427778	STARD3NL	O95772	234 aa		11.66	□□□□□ -0.54
LINC00963-204	ENST00000427778	GYS1	P13807	737 aa		11.66	□□□□□ -0.54
LINC00963-204	ENST00000427778	TAF7	Q15545	349 aa	Predicted RBP	11.66	□□□□□ -0.54
LINC00963-204	ENST00000427778	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.66	□□□□□ -0.54
LINC00963-204	ENST00000427778	NLGN1	Q8N2Q7	840 aa		11.66	□□□□□ -0.54
LINC00963-204	ENST00000427778	NRXN2	Q9P2S2	1712 aa		11.66	□□□□□ -0.54
LINC00963-204	ENST00000427778	COL15A1	P39059	1388 aa		11.66	□□□□□ -0.54
LINC00963-204	ENST00000427778	RFC4	P35249	363 aa		11.65	□□□□□ -0.54
LINC00963-204	ENST00000427778	DCTN1	Q14203	1278 aa		11.65	□□□□□ -0.54
LINC00963-204	ENST00000427778	WDR43	Q15061	677 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
LINC00963-204	ENST00000427778	PNISR	Q8TF01	805 aa	Known RBP	11.65	□□□□□ -0.54
LINC00963-204	ENST00000427778	TIAM2	Q8IVF5	1701 aa		11.65	□□□□□ -0.54
LINC00963-204	ENST00000427778	AFDN	P55196	1824 aa	Known RBP	11.65	□□□□□ -0.55
LINC00963-204	ENST00000427778	CCDC88A	Q3V6T2	1871 aa		11.64	□□□□□ -0.55
LINC00963-204	ENST00000427778	C10orf71	Q711Q0	1435 aa		11.64	□□□□□ -0.55
LINC00963-204	ENST00000427778	TMPO	P42166	694 aa	Known RBP	11.64	□□□□□ -0.55
LINC00963-204	ENST00000427778	LMOD3	Q0VAK6	560 aa		11.64	□□□□□ -0.55
LINC00963-204	ENST00000427778	RUNDC1	Q96C34	613 aa		11.64	□□□□□ -0.55
LINC00963-204	ENST00000427778	ZBTB1	Q9Y2K1	713 aa		11.64	□□□□□ -0.55
LINC00963-204	ENST00000427778	KCNQ3	O43525	872 aa		11.63	□□□□□ -0.55
LINC00963-204	ENST00000427778	MMP10	P09238	476 aa		11.63	□□□□□ -0.55
LINC00963-204	ENST00000427778	ATN1	P54259	1190 aa	Predicted RBP	11.63	□□□□□ -0.55
LINC00963-204	ENST00000427778	EIF5	P55010	431 aa	Known RBP	11.63	□□□□□ -0.55
LINC00963-204	ENST00000427778	FSTL1	Q12841	308 aa		11.63	□□□□□ -0.55
LINC00963-204	ENST00000427778	BABAM1	Q9NWV8	329 aa		11.63	□□□□□ -0.55
LINC00963-204	ENST00000427778	NARF	Q9UHQ1	456 aa		11.63	□□□□□ -0.55
LINC00963-204	ENST00000427778	ADAMTS8	Q9UP79	889 aa		11.63	□□□□□ -0.55
LINC00963-204	ENST00000427778	SNRPA1	P09661	255 aa	Known RBP	11.62	□□□□□ -0.55
LINC00963-204	ENST00000427778	HSPA1A	P0DMV8	641 aa	Known RBP	11.62	□□□□□ -0.55
LINC00963-204	ENST00000427778	HSPA1B	P0DMV9	641 aa	Known RBP	11.62	□□□□□ -0.55
LINC00963-204	ENST00000427778	IL6ST	P40189	918 aa	Predicted RBP	11.62	□□□□□ -0.55
LINC00963-204	ENST00000427778	RIPK4	P57078	832 aa		11.62	□□□□□ -0.55
LINC00963-204	ENST00000427778		A0A087WZG4	1122 aa		11.61	□□□□□ -0.55
LINC00963-204	ENST00000427778	SRP68	Q9UHB9	627 aa	Known RBP	11.61	□□□□□ -0.55
LINC00963-204	ENST00000427778	DLEC1	Q9Y238	1755 aa		11.61	□□□□□ -0.55
LINC00963-204	ENST00000427778	RGL2	O15211	777 aa		11.6	□□□□□ -0.55
LINC00963-204	ENST00000427778	ZPR1	O75312	459 aa		11.6	□□□□□ -0.55
LINC00963-204	ENST00000427778	TM4SF1	P30408	202 aa		11.6	□□□□□ -0.55
LINC00963-204	ENST00000427778	FKBP8	Q14318	412 aa		11.6	□□□□□ -0.55
LINC00963-204	ENST00000427778	LCE2D	Q5TA82	110 aa	Predicted RBP	11.6	□□□□□ -0.55
LINC00963-204	ENST00000427778	THUMPD2	Q9BTF0	503 aa	Known RBP	11.6	□□□□□ -0.55
LINC00963-204	ENST00000427778	BCS1L	Q9Y276	419 aa		11.6	□□□□□ -0.55
LINC00963-204	ENST00000427778	CANX	P27824	592 aa	Known RBP	11.59	□□□□□ -0.55
LINC00963-204	ENST00000427778	EIF4A1	P60842	406 aa	Known RBP	11.59	□□□□□ -0.55
LINC00963-204	ENST00000427778	DDR1	Q08345	913 aa		11.59	□□□□□ -0.55
LINC00963-204	ENST00000427778	USPL1	Q5W0Q7	1092 aa		11.59	□□□□□ -0.55
LINC00963-204	ENST00000427778	CCDC146	Q8IYE0	955 aa		11.59	□□□□□ -0.55
LINC00963-204	ENST00000427778	BCL2L12	Q9HB09	334 aa		11.59	□□□□□ -0.55
LINC00963-204	ENST00000427778	TRIM35	Q9UPQ4	493 aa		11.59	□□□□□ -0.55
LINC00963-204	ENST00000427778	USP16	Q9Y5T5	823 aa		11.59	□□□□□ -0.55
LINC00963-204	ENST00000427778	NUP98	P52948	1817 aa		11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	ANKRD31	Q8N7Z5	1873 aa		11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	PRAMEF22	A3QJZ6	481 aa		11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	POLRMT	O00411	1230 aa	Known RBP	11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	ANP32C	O43423	234 aa		11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	A1BG	P04217	495 aa		11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	MIS18A	Q9NYP9	233 aa		11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	PARP3	Q9Y6F1	533 aa		11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	ERBB4	Q15303	1308 aa		11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	KDM2B	Q8NHM5	1336 aa		11.58	□□□□□ -0.56
LINC00963-204	ENST00000427778	NBPF26	B4DH59	902 aa		11.57	□□□□□ -0.56
LINC00963-204	ENST00000427778	CHL1	O00533	1208 aa		11.57	□□□□□ -0.56
LINC00963-204	ENST00000427778	TGFB2	P61812	414 aa		11.57	□□□□□ -0.56
LINC00963-204	ENST00000427778	CCDC184	Q52MB2	194 aa		11.57	□□□□□ -0.56
LINC00963-204	ENST00000427778	NBPF10	Q6P3W6	841 aa	Known RBP	11.57	□□□□□ -0.56
LINC00963-204	ENST00000427778	ARHGAP27	Q6ZUM4	889 aa		11.57	□□□□□ -0.56
LINC00963-204	ENST00000427778	NBPF15	Q8N660	670 aa		11.57	□□□□□ -0.56
LINC00963-204	ENST00000427778	RRP7A	Q9Y3A4	280 aa	Known RBP	11.57	□□□□□ -0.56
LINC00963-204	ENST00000427778	CAMTA2	O94983	1202 aa		11.56	□□□□□ -0.56
LINC00963-204	ENST00000427778	NFIX	Q14938	502 aa		11.56	□□□□□ -0.56
LINC00963-204	ENST00000427778	SMC1B	Q8NDV3	1235 aa		11.56	□□□□□ -0.56
LINC00963-204	ENST00000427778	TSPYL4	Q9UJ04	414 aa		11.56	□□□□□ -0.56
LINC00963-204	ENST00000427778	C9orf131	Q5VYM1	1079 aa		11.55	□□□□□ -0.56
LINC00963-204	ENST00000427778	CLEC4G	Q6UXB4	293 aa		11.55	□□□□□ -0.56
LINC00963-204	ENST00000427778	CARMIL3	Q8ND23	1372 aa		11.54	□□□□□ -0.56
LINC00963-204	ENST00000427778	DICER1	Q9UPY3	1922 aa	Known RBP	11.54	□□□□□ -0.56
LINC00963-204	ENST00000427778	ANKRD36C	Q5JPF3	1778 aa		11.54	□□□□□ -0.56
LINC00963-204	ENST00000427778	APAF1	O14727	1248 aa		11.54	□□□□□ -0.56
LINC00963-204	ENST00000427778	SEC24B	O95487	1268 aa		11.54	□□□□□ -0.56
LINC00963-204	ENST00000427778	NEUROD2	Q15784	382 aa		11.54	□□□□□ -0.56
LINC00963-204	ENST00000427778	NPM2	Q86SE8	214 aa	Known RBP	11.54	□□□□□ -0.56
LINC00963-204	ENST00000427778	DZIP3	Q86Y13	1208 aa	Known RBP	11.54	□□□□□ -0.56
LINC00963-204	ENST00000427778	CFAP44	Q96MT7	982 aa		11.54	□□□□□ -0.56
LINC00963-204	ENST00000427778	MRS2	Q9HD23	443 aa		11.54	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms