RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 NAP1L5Q96NT1 182 aaPredicted RBP17.31■□□□□ 0.36
LIG1-202ENST00000427526 UPF3BQ9BZI7 483 aaKnown RBP17.31■□□□□ 0.36
LIG1-202ENST00000427526 MEGF6O75095 1541 aa17.3■□□□□ 0.36
LIG1-202ENST00000427526 GIGYF1O75420 1035 aaPredicted RBP17.3■□□□□ 0.36
LIG1-202ENST00000427526 FOXD4L5Q5VV16 416 aaPredicted RBP17.3■□□□□ 0.36
LIG1-202ENST00000427526 FOXD4L4Q8WXT5 416 aaPredicted RBP17.3■□□□□ 0.36
LIG1-202ENST00000427526 COL18A1P39060 1754 aa17.3■□□□□ 0.36
LIG1-202ENST00000427526 PI4KAP2A4QPH2 592 aa17.3■□□□□ 0.36
LIG1-202ENST00000427526 SLC39A6Q13433 755 aa17.3■□□□□ 0.36
LIG1-202ENST00000427526 PI4KAP1Q8N8J0 262 aa17.3■□□□□ 0.36
LIG1-202ENST00000427526 DNAAF4Q8WXU2 420 aa17.3■□□□□ 0.36
LIG1-202ENST00000427526 SGSM2O43147 1006 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 PHKG2P15735 406 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 LRSAM1Q6UWE0 723 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 PDLIM2Q96JY6 352 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 SPG7Q9UQ90 795 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 SOS2Q07890 1332 aaPredicted RBP17.29■□□□□ 0.36
LIG1-202ENST00000427526 MBD3O95983 291 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 ZSCAN30Q86W11 494 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 NFATC2IPQ8NCF5 419 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 CHMP4AQ9BY43 222 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 PRDM11Q9NQV5 511 aa17.29■□□□□ 0.36
LIG1-202ENST00000427526 CPDO75976 1380 aa17.28■□□□□ 0.36
LIG1-202ENST00000427526 RAD50Q92878 1312 aa17.28■□□□□ 0.36
LIG1-202ENST00000427526 PROSER3Q2NL68 480 aa17.28■□□□□ 0.36
LIG1-202ENST00000427526 NOL8Q76FK4 1167 aaKnown RBP17.28■□□□□ 0.36
LIG1-202ENST00000427526 ADCY9O60503 1353 aa17.28■□□□□ 0.36
LIG1-202ENST00000427526 USP42Q9H9J4 1324 aaKnown RBP17.28■□□□□ 0.36
LIG1-202ENST00000427526 MAP4K4O95819 1239 aaPredicted RBP17.28■□□□□ 0.36
LIG1-202ENST00000427526 CYP27B1O15528 508 aa17.27■□□□□ 0.36
LIG1-202ENST00000427526 HS1BP3Q53T59 392 aa17.27■□□□□ 0.36
LIG1-202ENST00000427526 OVOS2A0A0G2JMS6 1433 aa17.27■□□□□ 0.36
LIG1-202ENST00000427526 CRYBG1Q9Y4K1 1723 aa17.27■□□□□ 0.36
LIG1-202ENST00000427526 KDM6AO15550 1401 aaPredicted RBP17.27■□□□□ 0.35
LIG1-202ENST00000427526 LSG1Q9H089 658 aaKnown RBP17.27■□□□□ 0.35
LIG1-202ENST00000427526 MTX1Q13505 466 aa17.26■□□□□ 0.35
LIG1-202ENST00000427526 IFNL2Q8IZJ0 200 aa17.26■□□□□ 0.35
LIG1-202ENST00000427526 SLC52A2Q9HAB3 445 aa17.26■□□□□ 0.35
LIG1-202ENST00000427526 HEG1Q9ULI3 1381 aa17.26■□□□□ 0.35
LIG1-202ENST00000427526 SYCE3A1L190 88 aa17.26■□□□□ 0.35
LIG1-202ENST00000427526 HSP90AB4PQ58FF6 505 aa17.26■□□□□ 0.35
LIG1-202ENST00000427526 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.26■□□□□ 0.356e-6■□□□□ 8.9
LIG1-202ENST00000427526 DBF4Q9UBU7 674 aaPredicted RBP17.26■□□□□ 0.35
LIG1-202ENST00000427526 SNX14Q9Y5W7 946 aa17.26■□□□□ 0.35
LIG1-202ENST00000427526 CNTROBQ8N137 903 aa17.26■□□□□ 0.35
LIG1-202ENST00000427526 TTC14Q96N46 770 aa17.26■□□□□ 0.35
LIG1-202ENST00000427526 ZNF790Q6PG37 636 aa17.25■□□□□ 0.35
LIG1-202ENST00000427526 TTC41PQ6P2S7 1318 aa17.24■□□□□ 0.35
LIG1-202ENST00000427526 TOM1L2Q6ZVM7 507 aa17.23■□□□□ 0.35
LIG1-202ENST00000427526 RASEFQ8IZ41 740 aa17.23■□□□□ 0.35
LIG1-202ENST00000427526 WDR33Q9C0J8 1336 aaKnown RBP17.23■□□□□ 0.35
LIG1-202ENST00000427526 A0A0U1RQG5 324 aaPredicted RBP17.23■□□□□ 0.35
LIG1-202ENST00000427526 RPAP1Q9BWH6 1393 aaPredicted RBP17.22■□□□□ 0.35
LIG1-202ENST00000427526 GLRX3O76003 335 aaKnown RBP17.22■□□□□ 0.35
LIG1-202ENST00000427526 DCAF5Q96JK2 942 aa17.22■□□□□ 0.35
LIG1-202ENST00000427526 ALDH1L1O75891 902 aa17.21■□□□□ 0.35
LIG1-202ENST00000427526 CWC27Q6UX04 472 aaKnown RBP17.21■□□□□ 0.35
LIG1-202ENST00000427526 ZNF496Q96IT1 587 aaPredicted RBP17.21■□□□□ 0.35
LIG1-202ENST00000427526 NOL7Q9UMY1 257 aaKnown RBP17.21■□□□□ 0.35
LIG1-202ENST00000427526 MAP3K2Q9Y2U5 619 aa17.21■□□□□ 0.35
LIG1-202ENST00000427526 WDR17Q8IZU2 1322 aa17.21■□□□□ 0.35
LIG1-202ENST00000427526 AK2P54819 239 aa17.21■□□□□ 0.34
LIG1-202ENST00000427526 AIMP1Q12904 312 aaKnown RBP17.21■□□□□ 0.34
LIG1-202ENST00000427526 PDIA6Q15084 440 aa17.21■□□□□ 0.34
LIG1-202ENST00000427526 RUFY3Q7L099 469 aa17.21■□□□□ 0.34
LIG1-202ENST00000427526 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.21■□□□□ 0.34
LIG1-202ENST00000427526 ADAMTS7Q9UKP4 1686 aa17.2■□□□□ 0.34
LIG1-202ENST00000427526 GADD45BO75293 160 aaPredicted RBP17.2■□□□□ 0.34
LIG1-202ENST00000427526 USP48Q86UV5 1035 aa17.2■□□□□ 0.34
LIG1-202ENST00000427526 STRN4Q9NRL3 753 aa17.2■□□□□ 0.34
LIG1-202ENST00000427526 MSNP26038 577 aaKnown RBP17.2■□□□□ 0.34
LIG1-202ENST00000427526 KSR2Q6VAB6 950 aa17.2■□□□□ 0.34
LIG1-202ENST00000427526 TMEM87AQ8NBN3 555 aa17.2■□□□□ 0.34
LIG1-202ENST00000427526 LIMCH1Q9UPQ0 1083 aa17.2■□□□□ 0.34
LIG1-202ENST00000427526 KIAA1211Q6ZU35 1233 aa17.19■□□□□ 0.34
LIG1-202ENST00000427526 CLASRPQ8N2M8 674 aaKnown RBP17.19■□□□□ 0.34
LIG1-202ENST00000427526 SIPA1L3O60292 1781 aaPredicted RBP17.19■□□□□ 0.34
LIG1-202ENST00000427526 OFD1O75665 1012 aa17.19■□□□□ 0.34
LIG1-202ENST00000427526 GDPD2Q9HCC8 539 aa17.19■□□□□ 0.34
LIG1-202ENST00000427526 HYPKQ9NX55 129 aa17.19■□□□□ 0.34
LIG1-202ENST00000427526 ABCC6O95255 1503 aa17.19■□□□□ 0.34
LIG1-202ENST00000427526 DDX21Q9NR30 783 aaKnown RBP eCLIP17.18■□□□□ 0.34
LIG1-202ENST00000427526 ECHDC1Q9NTX5 307 aa17.18■□□□□ 0.34
LIG1-202ENST00000427526 MYL6BP14649 208 aa17.18■□□□□ 0.34
LIG1-202ENST00000427526 CABP4P57796 275 aa17.18■□□□□ 0.34
LIG1-202ENST00000427526 RBM10P98175 930 aaKnown RBP17.18■□□□□ 0.34
LIG1-202ENST00000427526 OS9Q13438 667 aaPredicted RBP17.18■□□□□ 0.34
LIG1-202ENST00000427526 KCNB2Q92953 911 aa17.18■□□□□ 0.34
LIG1-202ENST00000427526 SYAP1Q96A49 352 aaPredicted RBP17.18■□□□□ 0.34
LIG1-202ENST00000427526 CWF19L2Q2TBE0 894 aaKnown RBP17.18■□□□□ 0.34
LIG1-202ENST00000427526 FOXD4L6Q3SYB3 417 aaPredicted RBP17.18■□□□□ 0.34
LIG1-202ENST00000427526 LARP1Q6PKG0 1096 aaKnown RBP17.18■□□□□ 0.34
LIG1-202ENST00000427526 FOXD4L3Q6VB84 417 aaPredicted RBP17.18■□□□□ 0.34
LIG1-202ENST00000427526 C9orf78Q9NZ63 289 aaPredicted RBP17.18■□□□□ 0.34
LIG1-202ENST00000427526 USP16Q9Y5T5 823 aa17.18■□□□□ 0.34
LIG1-202ENST00000427526 ZNF500O60304 480 aaPredicted RBP17.17■□□□□ 0.34
LIG1-202ENST00000427526 PIP4K2AP48426 406 aaPredicted RBP17.17■□□□□ 0.34
LIG1-202ENST00000427526 FGD1P98174 961 aa17.17■□□□□ 0.34
LIG1-202ENST00000427526 PTH1RQ03431 593 aa17.17■□□□□ 0.34
LIG1-202ENST00000427526 ZCRB1Q8TBF4 217 aaKnown RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms