RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SPECC1LQ69YQ0 1117 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 C8orf76Q96K31 380 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 ANO10Q9NW15 660 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 KIF14Q15058 1648 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 FGD6Q6ZV73 1430 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 MSANTD4Q8NCY6 345 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 ZNF622Q969S3 477 aaKnown RBP eCLIP7.89□□□□□ -1.15
SCN1A-204ENST00000423058 KAT14Q9H8E8 782 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 NCOA2Q15596 1464 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 PRPHP41219 470 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 PDCL2Q8N4E4 241 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 IMPG2Q9BZV3 1241 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 NDC80O14777 642 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 C1orf115Q9H7X2 142 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 POLD1P28340 1107 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 LMOD1P29536 600 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-204ENST00000423058 SPECC1Q5M775 1068 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 OTUD6BQ8N6M0 293 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 KIAA1524Q8TCG1 905 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 UBXN4Q92575 508 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 BCCIPQ9P287 314 aaKnown RBP eCLIP7.89□□□□□ -1.15
SCN1A-204ENST00000423058 TRMT112Q9UI30 125 aaKnown RBP7.89□□□□□ -1.15
SCN1A-204ENST00000423058 TBCAO75347 108 aaKnown RBP7.88□□□□□ -1.15
SCN1A-204ENST00000423058 PRKCSHP14314 528 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-204ENST00000423058 TDRD12Q587J7 1177 aaKnown RBP7.88□□□□□ -1.15
SCN1A-204ENST00000423058 SH3BP5O60239 455 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 EXOSC9Q06265 439 aaKnown RBP7.88□□□□□ -1.15
SCN1A-204ENST00000423058 MPRIPQ6WCQ1 1025 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 TIGD1Q96MW7 591 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 ERBINQ96RT1 1412 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 POTEB2H3BUK9 544 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 SFPQP23246 707 aaKnown RBP eCLIP7.88□□□□□ -1.15
SCN1A-204ENST00000423058 BEGAINQ9BUH8 593 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 CABP1Q9NZU7 370 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 EFCAB5A4FU69 1503 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 PHACTR2O75167 634 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 ADAMTS2O95450 1211 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 CHD1LQ86WJ1 897 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 SH2B1Q9NRF2 756 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-204ENST00000423058 CEP83Q9Y592 693 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 ANKRD30BQ9BXX2 1392 aa7.88□□□□□ -1.15
SCN1A-204ENST00000423058 SETD1BQ9UPS6 1966 aaKnown RBP7.88□□□□□ -1.15
SCN1A-204ENST00000423058 MTIF2P46199 727 aaKnown RBP7.88□□□□□ -1.15
SCN1A-204ENST00000423058 IQCGQ9H095 443 aaKnown RBP7.88□□□□□ -1.15
SCN1A-204ENST00000423058 GOLIM4O00461 696 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 TOP1P11387 765 aaKnown RBP7.87□□□□□ -1.15
SCN1A-204ENST00000423058 C9orf84Q5VXU9 1444 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 KLHL10Q6JEL2 608 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 EHBP1Q8NDI1 1231 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 CRNKL1Q9BZJ0 848 aaKnown RBP7.87□□□□□ -1.15
SCN1A-204ENST00000423058 PTCD1O75127 700 aaKnown RBP7.87□□□□□ -1.15
SCN1A-204ENST00000423058 FCHSD2O94868 740 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 NFE2L2Q16236 605 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 CCDC40Q4G0X9 1142 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 TCERG1LQ5VWI1 586 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 IFIT3O14879 490 aaKnown RBP7.87□□□□□ -1.15
SCN1A-204ENST00000423058 SCAND2PQ9GZW5 306 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-204ENST00000423058 ZBTB24O43167 697 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-204ENST00000423058 CCDC155Q8N6L0 562 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 A0A1W2PRG0 241 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 MVPQ14764 893 aaKnown RBP7.87□□□□□ -1.15
SCN1A-204ENST00000423058 MAP7D1Q3KQU3 841 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 CNNM3Q8NE01 707 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 PUS7Q96PZ0 661 aaKnown RBP7.87□□□□□ -1.15
SCN1A-204ENST00000423058 RMND1Q9NWS8 449 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 ZC3H6P61129 1189 aaKnown RBP7.87□□□□□ -1.15
SCN1A-204ENST00000423058 GRM1Q13255 1194 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 FILIP1Q7Z7B0 1213 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 TSHZ2Q9NRE2 1034 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 RASAL2Q9UJF2 1139 aa7.87□□□□□ -1.15
SCN1A-204ENST00000423058 CCDC141Q6ZP82 1450 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 TMCO5BA8MYB1 307 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 NBPF8Q3BBV2 869 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 NBPF14Q5TI25 921 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 CCDC85AQ96PX6 553 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 CLIP2Q9UDT6 1046 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 GOLGA6L9A6NEM1 432 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 TSPY2A6NKD2 308 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 TAF7Q15545 349 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 SELENOOQ9BVL4 669 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 BCAR3O75815 825 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 KRT13P13646 458 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 KMT5BQ4FZB7 885 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 CCDC152Q4G0S7 254 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 KIF18AQ8NI77 898 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 BIN2Q9UBW5 565 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 CBX1P83916 185 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 KIAA0753Q2KHM9 967 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 RPAP2Q8IXW5 612 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 EXOC1Q9NV70 894 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 ADAMTS8Q9UP79 889 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 PRG4Q92954 1404 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 CKAP4Q07065 602 aaKnown RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 HLTFQ14527 1009 aaKnown RBP eCLIP7.86□□□□□ -1.156e-7■■■■□ 22.5
SCN1A-204ENST00000423058 ATP2A1O14983 1001 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 GMNNO75496 209 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 CNGA1P29973 690 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 PPP2R1AP30153 589 aa7.86□□□□□ -1.15
SCN1A-204ENST00000423058 PRPF4BQ13523 1007 aaKnown RBP7.86□□□□□ -1.15
SCN1A-204ENST00000423058 FMNL3Q8IVF7 1028 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms