RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 NBPF5PQ86XG9 351 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-203ENST00000422245 NBPF15Q8N660 670 aa15.27■□□□□ 0.04
SQSTM1-203ENST00000422245 CEP350Q5VT06 3117 aa15.27■□□□□ 0.03
SQSTM1-203ENST00000422245 NFKBIEO00221 500 aa15.26■□□□□ 0.03
SQSTM1-203ENST00000422245 STYK1Q6J9G0 422 aa15.26■□□□□ 0.03
SQSTM1-203ENST00000422245 C16orf71Q8IYS4 520 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-203ENST00000422245 CCDC24Q8N4L8 307 aa15.26■□□□□ 0.03
SQSTM1-203ENST00000422245 RBM46Q8TBY0 533 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-203ENST00000422245 CNKSR1Q969H4 720 aa15.26■□□□□ 0.03
SQSTM1-203ENST00000422245 FER1L6Q2WGJ9 1857 aa15.25■□□□□ 0.03
SQSTM1-203ENST00000422245 CCDC88AQ3V6T2 1871 aa15.25■□□□□ 0.03
SQSTM1-203ENST00000422245 APLP1P51693 650 aa15.25■□□□□ 0.03
SQSTM1-203ENST00000422245 MIS18AQ9NYP9 233 aa15.25■□□□□ 0.03
SQSTM1-203ENST00000422245 CACNA1SQ13698 1873 aa15.25■□□□□ 0.03
SQSTM1-203ENST00000422245 SRGNP10124 158 aa15.24■□□□□ 0.03
SQSTM1-203ENST00000422245 EIF4A1P60842 406 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-203ENST00000422245 SOGA3Q5TF21 947 aa15.24■□□□□ 0.03
SQSTM1-203ENST00000422245 MASTLQ96GX5 879 aa15.24■□□□□ 0.03
SQSTM1-203ENST00000422245 THUMPD2Q9BTF0 503 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-203ENST00000422245 NIP7Q9Y221 180 aaKnown RBP eCLIP15.24■□□□□ 0.03
SQSTM1-203ENST00000422245 DICER1Q9UPY3 1922 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-203ENST00000422245 LTBP3Q9NS15 1303 aa15.23■□□□□ 0.03
SQSTM1-203ENST00000422245 C21orf2O43822 256 aa15.23■□□□□ 0.03
SQSTM1-203ENST00000422245 PRELPP51888 382 aa15.23■□□□□ 0.03
SQSTM1-203ENST00000422245 PRPF40BQ6NWY9 871 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-203ENST00000422245 ERBB4Q15303 1308 aa15.22■□□□□ 0.03
SQSTM1-203ENST00000422245 MYBBP1AQ9BQG0 1328 aaKnown RBP15.22■□□□□ 0.03
SQSTM1-203ENST00000422245 GLTPD2A6NH11 291 aa15.22■□□□□ 0.03
SQSTM1-203ENST00000422245 LMOD3Q0VAK6 560 aa15.22■□□□□ 0.03
SQSTM1-203ENST00000422245 FSTL1Q12841 308 aa15.22■□□□□ 0.03
SQSTM1-203ENST00000422245 TPTE2Q6XPS3 522 aa15.22■□□□□ 0.03
SQSTM1-203ENST00000422245 TAOK3Q9H2K8 898 aa15.22■□□□□ 0.03
SQSTM1-203ENST00000422245 SLX4Q8IY92 1834 aa15.22■□□□□ 0.03
SQSTM1-203ENST00000422245 WDR90Q96KV7 1748 aa15.21■□□□□ 0.03
SQSTM1-203ENST00000422245 ERVV-1B6SEH8 477 aa15.21■□□□□ 0.03
SQSTM1-203ENST00000422245 KIF6Q6ZMV9 814 aa15.21■□□□□ 0.03
SQSTM1-203ENST00000422245 RRAGCQ9HB90 399 aa15.21■□□□□ 0.03
SQSTM1-203ENST00000422245 ZNF219Q9P2Y4 722 aaPredicted RBP15.21■□□□□ 0.03
SQSTM1-203ENST00000422245 TSPYL4Q9UJ04 414 aa15.21■□□□□ 0.03
SQSTM1-203ENST00000422245 MAP3K15Q6ZN16 1313 aa15.2■□□□□ 0.02
SQSTM1-203ENST00000422245 KLRG2A4D1S0 409 aaPredicted RBP15.2■□□□□ 0.02
SQSTM1-203ENST00000422245 NPR1P16066 1061 aa15.2■□□□□ 0.02
SQSTM1-203ENST00000422245 BABAM1Q9NWV8 329 aa15.2■□□□□ 0.02
SQSTM1-203ENST00000422245 IBTKQ9P2D0 1353 aaPredicted RBP15.2■□□□□ 0.02
SQSTM1-203ENST00000422245 NUP98P52948 1817 aa15.2■□□□□ 0.02
SQSTM1-203ENST00000422245 RIPK4P57078 832 aa15.19■□□□□ 0.02
SQSTM1-203ENST00000422245 DDX10Q13206 875 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-203ENST00000422245 HLFQ16534 295 aa15.19■□□□□ 0.02
SQSTM1-203ENST00000422245 ERFEQ4G0M1 354 aa15.19■□□□□ 0.02
SQSTM1-203ENST00000422245 SMC1BQ8NDV3 1235 aa15.19■□□□□ 0.02
SQSTM1-203ENST00000422245 NYXQ9GZU5 481 aa15.19■□□□□ 0.02
SQSTM1-203ENST00000422245 VEGFAP15692 232 aaPredicted RBP15.18■□□□□ 0.02
SQSTM1-203ENST00000422245 GTF2E1P29083 439 aaPredicted RBP15.18■□□□□ 0.02
SQSTM1-203ENST00000422245 CCDC93Q567U6 631 aa15.18■□□□□ 0.02
SQSTM1-203ENST00000422245 DPY19L2Q6NUT2 758 aa15.18■□□□□ 0.02
SQSTM1-203ENST00000422245 RRP7AQ9Y3A4 280 aaKnown RBP15.18■□□□□ 0.02
SQSTM1-203ENST00000422245 ABCC12Q96J65 1359 aa15.17■□□□□ 0.02
SQSTM1-203ENST00000422245 FAM177BA6PVY3 158 aa15.17■□□□□ 0.02
SQSTM1-203ENST00000422245 MYL6BP14649 208 aa15.17■□□□□ 0.02
SQSTM1-203ENST00000422245 TMPOP42166 694 aaKnown RBP15.17■□□□□ 0.02
SQSTM1-203ENST00000422245 NGEFQ8N5V2 710 aa15.17■□□□□ 0.02
SQSTM1-203ENST00000422245 RIC1Q4ADV7 1423 aa15.17■□□□□ 0.02
SQSTM1-203ENST00000422245 WDR43Q15061 677 aaKnown RBP eCLIP15.16■□□□□ 0.02
SQSTM1-203ENST00000422245 TTLL7Q6ZT98 887 aa15.16■□□□□ 0.02
SQSTM1-203ENST00000422245 C7orf43Q8WVR3 580 aa15.16■□□□□ 0.02
SQSTM1-203ENST00000422245 ZBTB3Q9H5J0 574 aa15.16■□□□□ 0.02
SQSTM1-203ENST00000422245 CRY2Q49AN0 593 aa15.15■□□□□ 0.02
SQSTM1-203ENST00000422245 ALDH1B1P30837 517 aa15.14■□□□□ 0.01
SQSTM1-203ENST00000422245 FKBP4Q02790 459 aaKnown RBP eCLIP15.14■□□□□ 0.011e-6■■□□□ 13.4
SQSTM1-203ENST00000422245 GIGYF2Q6Y7W6 1299 aaKnown RBP15.14■□□□□ 0.01
SQSTM1-203ENST00000422245 RTKN2Q8IZC4 609 aa15.14■□□□□ 0.01
SQSTM1-203ENST00000422245 UBN2Q6ZU65 1347 aa15.14■□□□□ 0.01
SQSTM1-203ENST00000422245 GPTP24298 496 aa15.13■□□□□ 0.01
SQSTM1-203ENST00000422245 PARP10Q53GL7 1025 aa15.13■□□□□ 0.01
SQSTM1-203ENST00000422245 NUTM1Q86Y26 1132 aa15.13■□□□□ 0.01
SQSTM1-203ENST00000422245 CCDC146Q8IYE0 955 aa15.13■□□□□ 0.01
SQSTM1-203ENST00000422245 DNAJC5GQ8N7S2 189 aa15.13■□□□□ 0.01
SQSTM1-203ENST00000422245 RUNDC1Q96C34 613 aa15.13■□□□□ 0.01
SQSTM1-203ENST00000422245 EIF2S2P20042 333 aaKnown RBP15.12■□□□□ 0.01
SQSTM1-203ENST00000422245 PDIA6Q15084 440 aa15.12■□□□□ 0.01
SQSTM1-203ENST00000422245 LRP10Q7Z4F1 713 aa15.12■□□□□ 0.01
SQSTM1-203ENST00000422245 ZNF34Q8IZ26 560 aa15.12■□□□□ 0.01
SQSTM1-203ENST00000422245 POTECB2RU33 542 aa15.11■□□□□ 0.01
SQSTM1-203ENST00000422245 NTSR2O95665 410 aa15.11■□□□□ 0.01
SQSTM1-203ENST00000422245 NEUROD2Q15784 382 aa15.11■□□□□ 0.01
SQSTM1-203ENST00000422245 SUSD4Q5VX71 490 aa15.11■□□□□ 0.01
SQSTM1-203ENST00000422245 PPP1R42Q7Z4L9 355 aa15.11■□□□□ 0.01
SQSTM1-203ENST00000422245 RPGRQ92834 1020 aaKnown RBP15.11■□□□□ 0.01
SQSTM1-203ENST00000422245 ANKRD36CQ5JPF3 1778 aa15.11■□□□□ 0.01
SQSTM1-203ENST00000422245 SCN4AP35499 1836 aa15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 CHL1O00533 1208 aa15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 HOXA10P31260 410 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 PROSER3Q2NL68 480 aa15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 CC2D2BQ6DHV5 1058 aa15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 KLRG1Q96E93 195 aa15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 L3MBTL3Q96JM7 780 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 PRKRIP1Q9H875 184 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 ZNF277Q9NRM2 450 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 RNF123Q5XPI4 1314 aa15.1■□□□□ 0.01
SQSTM1-203ENST00000422245 SNED1Q8TER0 1413 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms