RNA–Protein interactions for RNA: ENST00000420996.2

UPF3AP3-201, Transcript of UPF3A pseudogene 3, humanhuman

BASIC

Gene UPF3AP3, Length 769 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AP3-201ENST00000420996 SLX4Q8IY92 1834 aa22.57■■□□□ 1.2
UPF3AP3-201ENST00000420996 ST5P78524 1137 aa22.57■■□□□ 1.2
UPF3AP3-201ENST00000420996 STYK1Q6J9G0 422 aa22.57■■□□□ 1.2
UPF3AP3-201ENST00000420996 CACNA1SQ13698 1873 aa22.56■■□□□ 1.2
UPF3AP3-201ENST00000420996 SRGNP10124 158 aa22.56■■□□□ 1.2
UPF3AP3-201ENST00000420996 CLEC4GQ6UXB4 293 aa22.56■■□□□ 1.2
UPF3AP3-201ENST00000420996 ARFGEF2Q9Y6D5 1785 aa22.55■■□□□ 1.2
UPF3AP3-201ENST00000420996 MASTLQ96GX5 879 aa22.55■■□□□ 1.2
UPF3AP3-201ENST00000420996 TAOK3Q9H2K8 898 aa22.55■■□□□ 1.2
UPF3AP3-201ENST00000420996 SNRPA1P09661 255 aaKnown RBP22.54■■□□□ 1.2
UPF3AP3-201ENST00000420996 SOGA3Q5TF21 947 aa22.54■■□□□ 1.2
UPF3AP3-201ENST00000420996 RTF1Q92541 710 aaKnown RBP22.54■■□□□ 1.2
UPF3AP3-201ENST00000420996 U2AF1L5P0DN76 240 aaPredicted RBP22.53■■□□□ 1.2
UPF3AP3-201ENST00000420996 PIP4K2AP48426 406 aaPredicted RBP22.53■■□□□ 1.2
UPF3AP3-201ENST00000420996 U2AF1Q01081 240 aaKnown RBP eCLIP22.53■■□□□ 1.2
UPF3AP3-201ENST00000420996 PRPF40BQ6NWY9 871 aaKnown RBP22.53■■□□□ 1.2
UPF3AP3-201ENST00000420996 PRAMEF22A3QJZ6 481 aa22.52■■□□□ 1.2
UPF3AP3-201ENST00000420996 COL13A1Q5TAT6 717 aaPredicted RBP22.52■■□□□ 1.2
UPF3AP3-201ENST00000420996 MCM10Q7L590 875 aa22.52■■□□□ 1.2
UPF3AP3-201ENST00000420996 ZNF652Q9Y2D9 606 aa22.52■■□□□ 1.2
UPF3AP3-201ENST00000420996 NBPF5PQ86XG9 351 aaPredicted RBP22.51■■□□□ 1.19
UPF3AP3-201ENST00000420996 RGL2O15211 777 aa22.5■■□□□ 1.19
UPF3AP3-201ENST00000420996 HTATSF1O43719 755 aaKnown RBP22.5■■□□□ 1.19
UPF3AP3-201ENST00000420996 PPP2R1AP30153 589 aa22.5■■□□□ 1.19
UPF3AP3-201ENST00000420996 DDNO94850 711 aaPredicted RBP22.48■■□□□ 1.19
UPF3AP3-201ENST00000420996 TPTE2Q6XPS3 522 aa22.48■■□□□ 1.19
UPF3AP3-201ENST00000420996 C7orf43Q8WVR3 580 aa22.48■■□□□ 1.19
UPF3AP3-201ENST00000420996 KLRG2A4D1S0 409 aaPredicted RBP22.47■■□□□ 1.19
UPF3AP3-201ENST00000420996 NBPF26B4DH59 902 aa22.47■■□□□ 1.19
UPF3AP3-201ENST00000420996 NPR1P16066 1061 aa22.47■■□□□ 1.19
UPF3AP3-201ENST00000420996 DCTN1Q14203 1278 aa22.47■■□□□ 1.19
UPF3AP3-201ENST00000420996 CHADLQ6NUI6 762 aa22.47■■□□□ 1.19
UPF3AP3-201ENST00000420996 NBPF10Q6P3W6 841 aaKnown RBP22.47■■□□□ 1.19
UPF3AP3-201ENST00000420996 NBPF15Q8N660 670 aa22.47■■□□□ 1.19
UPF3AP3-201ENST00000420996 TAF7Q15545 349 aaPredicted RBP22.46■■□□□ 1.19
UPF3AP3-201ENST00000420996 CCDC93Q567U6 631 aa22.46■■□□□ 1.19
UPF3AP3-201ENST00000420996 NIP7Q9Y221 180 aaKnown RBP eCLIP22.46■■□□□ 1.19
UPF3AP3-201ENST00000420996 HSPA1AP0DMV8 641 aaKnown RBP22.44■■□□□ 1.18
UPF3AP3-201ENST00000420996 HSPA1BP0DMV9 641 aaKnown RBP22.44■■□□□ 1.18
UPF3AP3-201ENST00000420996 SCN4AP35499 1836 aa22.44■■□□□ 1.18
UPF3AP3-201ENST00000420996 IQCA1LA6NCM1 817 aa22.43■■□□□ 1.18
UPF3AP3-201ENST00000420996 FKBP4Q02790 459 aaKnown RBP eCLIP22.43■■□□□ 1.18
UPF3AP3-201ENST00000420996 TNS4Q8IZW8 715 aa22.43■■□□□ 1.18
UPF3AP3-201ENST00000420996 L3MBTL3Q96JM7 780 aaPredicted RBP22.43■■□□□ 1.18
UPF3AP3-201ENST00000420996 CREBZFQ9NS37 354 aa22.43■■□□□ 1.18
UPF3AP3-201ENST00000420996 PCNTO95613 3336 aa22.42■■□□□ 1.18
UPF3AP3-201ENST00000420996 POTEIP0CG38 1075 aa22.42■■□□□ 1.18
UPF3AP3-201ENST00000420996 POTEJP0CG39 1038 aa22.42■■□□□ 1.18
UPF3AP3-201ENST00000420996 LAMB4A4D0S4 1761 aa22.42■■□□□ 1.18
UPF3AP3-201ENST00000420996 HLFQ16534 295 aa22.41■■□□□ 1.18
UPF3AP3-201ENST00000420996 RTKN2Q8IZC4 609 aa22.41■■□□□ 1.18
UPF3AP3-201ENST00000420996 DLG5Q8TDM6 1919 aa22.41■■□□□ 1.18
UPF3AP3-201ENST00000420996 FAM177BA6PVY3 158 aa22.4■■□□□ 1.18
UPF3AP3-201ENST00000420996 ALDH1B1P30837 517 aa22.4■■□□□ 1.18
UPF3AP3-201ENST00000420996 TAF1DQ9H5J8 278 aaPredicted RBP22.4■■□□□ 1.18
UPF3AP3-201ENST00000420996 MIS18AQ9NYP9 233 aa22.4■■□□□ 1.18
UPF3AP3-201ENST00000420996 LDHDQ86WU2 507 aa22.39■■□□□ 1.17
UPF3AP3-201ENST00000420996 PNISRQ8TF01 805 aaKnown RBP22.39■■□□□ 1.17
UPF3AP3-201ENST00000420996 ZNF277Q9NRM2 450 aaPredicted RBP22.39■■□□□ 1.17
UPF3AP3-201ENST00000420996 NEFMP07197 916 aa22.38■■□□□ 1.17
UPF3AP3-201ENST00000420996 GTF2E1P29083 439 aaPredicted RBP22.38■■□□□ 1.17
UPF3AP3-201ENST00000420996 OLFM4Q6UX06 510 aa22.38■■□□□ 1.17
UPF3AP3-201ENST00000420996 NUP98P52948 1817 aa22.38■■□□□ 1.17
UPF3AP3-201ENST00000420996 KDM3BQ7LBC6 1761 aa22.38■■□□□ 1.17
UPF3AP3-201ENST00000420996 ERVV-1B6SEH8 477 aa22.37■■□□□ 1.17
UPF3AP3-201ENST00000420996 NYXQ9GZU5 481 aa22.37■■□□□ 1.17
UPF3AP3-201ENST00000420996 MKRN1Q9UHC7 482 aaKnown RBP22.36■■□□□ 1.17
UPF3AP3-201ENST00000420996 PASKQ96RG2 1323 aa22.35■■□□□ 1.17
UPF3AP3-201ENST00000420996 ZNF541Q9H0D2 1346 aa22.35■■□□□ 1.17
UPF3AP3-201ENST00000420996 SYNE4Q8N205 404 aa22.35■■□□□ 1.17
UPF3AP3-201ENST00000420996 CAPN15O75808 1086 aa22.34■■□□□ 1.17
UPF3AP3-201ENST00000420996 IARSP41252 1262 aaKnown RBP22.34■■□□□ 1.17
UPF3AP3-201ENST00000420996 CRY2Q49AN0 593 aa22.34■■□□□ 1.17
UPF3AP3-201ENST00000420996 NGEFQ8N5V2 710 aa22.34■■□□□ 1.17
UPF3AP3-201ENST00000420996 HACL1Q9UJ83 578 aa22.34■■□□□ 1.17
UPF3AP3-201ENST00000420996 MAP3K15Q6ZN16 1313 aa22.33■■□□□ 1.17
UPF3AP3-201ENST00000420996 FZD9O00144 591 aa22.33■■□□□ 1.17
UPF3AP3-201ENST00000420996 ITGBL1O95965 494 aaPredicted RBP22.33■■□□□ 1.17
UPF3AP3-201ENST00000420996 EIF4A1P60842 406 aaKnown RBP22.33■■□□□ 1.17
UPF3AP3-201ENST00000420996 PLEKHF1Q96S99 279 aa22.33■■□□□ 1.17
UPF3AP3-201ENST00000420996 PSMD1Q99460 953 aa22.33■■□□□ 1.17
UPF3AP3-201ENST00000420996 RRP7AQ9Y3A4 280 aaKnown RBP22.33■■□□□ 1.17
UPF3AP3-201ENST00000420996 EAPPQ56P03 285 aaPredicted RBP22.32■■□□□ 1.16
UPF3AP3-201ENST00000420996 CC2D2BQ6DHV5 1058 aa22.32■■□□□ 1.16
UPF3AP3-201ENST00000420996 KIF6Q6ZMV9 814 aa22.32■■□□□ 1.16
UPF3AP3-201ENST00000420996 NUTM1Q86Y26 1132 aa22.32■■□□□ 1.16
UPF3AP3-201ENST00000420996 CNTNAP1P78357 1384 aa22.32■■□□□ 1.16
UPF3AP3-201ENST00000420996 ABCC12Q96J65 1359 aa22.32■■□□□ 1.16
UPF3AP3-201ENST00000420996 SNED1Q8TER0 1413 aa22.31■■□□□ 1.16
UPF3AP3-201ENST00000420996 ADAMTSL1Q8N6G6 1762 aa22.31■■□□□ 1.16
UPF3AP3-201ENST00000420996 EPHX2P34913 555 aa22.31■■□□□ 1.16
UPF3AP3-201ENST00000420996 NFE2L2Q16236 605 aa22.31■■□□□ 1.16
UPF3AP3-201ENST00000420996 TTLL7Q6ZT98 887 aa22.31■■□□□ 1.16
UPF3AP3-201ENST00000420996 IBTKQ9P2D0 1353 aaPredicted RBP22.3■■□□□ 1.16
UPF3AP3-201ENST00000420996 TMEM88BA6NKF7 163 aa22.3■■□□□ 1.16
UPF3AP3-201ENST00000420996 HOXA10P31260 410 aaPredicted RBP22.3■■□□□ 1.16
UPF3AP3-201ENST00000420996 PNMA8AQ86V59 439 aaPredicted RBP22.3■■□□□ 1.16
UPF3AP3-201ENST00000420996 GPC2Q8N158 579 aa22.3■■□□□ 1.16
UPF3AP3-201ENST00000420996 JDP2Q8WYK2 163 aa22.3■■□□□ 1.16
UPF3AP3-201ENST00000420996 CLEC11AQ9Y240 323 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms