RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 HSPA1AP0DMV8 641 aaKnown RBP17.34■□□□□ 0.37
LINC00339-202ENST00000416769 HSPA1BP0DMV9 641 aaKnown RBP17.34■□□□□ 0.37
LINC00339-202ENST00000416769 DCTN1Q14203 1278 aa17.34■□□□□ 0.37
LINC00339-202ENST00000416769 PRPF40BQ6NWY9 871 aaKnown RBP17.34■□□□□ 0.37
LINC00339-202ENST00000416769 MCM10Q7L590 875 aa17.34■□□□□ 0.37
LINC00339-202ENST00000416769 ARFGEF2Q9Y6D5 1785 aa17.33■□□□□ 0.37
LINC00339-202ENST00000416769 NPC1L1Q9UHC9 1359 aa17.33■□□□□ 0.36
LINC00339-202ENST00000416769 BTBD11A6QL63 1104 aa17.33■□□□□ 0.36
LINC00339-202ENST00000416769 PDE6BP35913 854 aa17.33■□□□□ 0.36
LINC00339-202ENST00000416769 DZIP3Q86Y13 1208 aaKnown RBP17.33■□□□□ 0.36
LINC00339-202ENST00000416769 SRGNP10124 158 aa17.32■□□□□ 0.36
LINC00339-202ENST00000416769 SLC51AQ86UW1 340 aa17.32■□□□□ 0.36
LINC00339-202ENST00000416769 SETDB2Q96T68 719 aa17.32■□□□□ 0.36
LINC00339-202ENST00000416769 TAOK3Q9H2K8 898 aa17.32■□□□□ 0.36
LINC00339-202ENST00000416769 NBPF26B4DH59 902 aa17.31■□□□□ 0.36
LINC00339-202ENST00000416769 NBPF10Q6P3W6 841 aaKnown RBP17.31■□□□□ 0.36
LINC00339-202ENST00000416769 NBPF15Q8N660 670 aa17.31■□□□□ 0.36
LINC00339-202ENST00000416769 FAM177BA6PVY3 158 aa17.3■□□□□ 0.36
LINC00339-202ENST00000416769 NPHP1O15259 732 aa17.3■□□□□ 0.36
LINC00339-202ENST00000416769 TNS4Q8IZW8 715 aa17.3■□□□□ 0.36
LINC00339-202ENST00000416769 TEX13AQ9BXU3 409 aaPredicted RBP17.3■□□□□ 0.36
LINC00339-202ENST00000416769 MKRN1Q9UHC7 482 aaKnown RBP17.3■□□□□ 0.36
LINC00339-202ENST00000416769 ZNF541Q9H0D2 1346 aa17.29■□□□□ 0.36
LINC00339-202ENST00000416769 STYK1Q6J9G0 422 aa17.29■□□□□ 0.36
LINC00339-202ENST00000416769 C7orf43Q8WVR3 580 aa17.29■□□□□ 0.36
LINC00339-202ENST00000416769 MIS18AQ9NYP9 233 aa17.29■□□□□ 0.36
LINC00339-202ENST00000416769 LTBP3Q9NS15 1303 aa17.28■□□□□ 0.36
LINC00339-202ENST00000416769 ST5P78524 1137 aa17.28■□□□□ 0.36
LINC00339-202ENST00000416769 DPY19L2Q6NUT2 758 aa17.28■□□□□ 0.36
LINC00339-202ENST00000416769 NBPF5PQ86XG9 351 aaPredicted RBP17.28■□□□□ 0.36
LINC00339-202ENST00000416769 CNKSR1Q969H4 720 aa17.28■□□□□ 0.36
LINC00339-202ENST00000416769 MASTLQ96GX5 879 aa17.28■□□□□ 0.36
LINC00339-202ENST00000416769 U2AF1L5P0DN76 240 aaPredicted RBP17.27■□□□□ 0.36
LINC00339-202ENST00000416769 U2AF1Q01081 240 aaKnown RBP eCLIP17.27■□□□□ 0.36
LINC00339-202ENST00000416769 HLFQ16534 295 aa17.27■□□□□ 0.36
LINC00339-202ENST00000416769 CHADLQ6NUI6 762 aa17.27■□□□□ 0.36
LINC00339-202ENST00000416769 ZNF277Q9NRM2 450 aaPredicted RBP17.27■□□□□ 0.36
LINC00339-202ENST00000416769 PPP2R1AP30153 589 aa17.26■□□□□ 0.35
LINC00339-202ENST00000416769 ABCC12Q96J65 1359 aa17.26■□□□□ 0.35
LINC00339-202ENST00000416769 PDZRN3Q9UPQ7 1066 aa17.25■□□□□ 0.35
LINC00339-202ENST00000416769 NIP7Q9Y221 180 aaKnown RBP eCLIP17.25■□□□□ 0.35
LINC00339-202ENST00000416769 COL4A5P29400 1685 aa17.25■□□□□ 0.35
LINC00339-202ENST00000416769 SNRPA1P09661 255 aaKnown RBP17.24■□□□□ 0.35
LINC00339-202ENST00000416769 NPM2Q86SE8 214 aaKnown RBP17.24■□□□□ 0.35
LINC00339-202ENST00000416769 NGEFQ8N5V2 710 aa17.23■□□□□ 0.35
LINC00339-202ENST00000416769 TAF1DQ9H5J8 278 aaPredicted RBP17.23■□□□□ 0.35
LINC00339-202ENST00000416769 DLG5Q8TDM6 1919 aa17.23■□□□□ 0.35
LINC00339-202ENST00000416769 LAMB4A4D0S4 1761 aa17.23■□□□□ 0.35
LINC00339-202ENST00000416769 KLRG2A4D1S0 409 aaPredicted RBP17.22■□□□□ 0.35
LINC00339-202ENST00000416769 CCDC93Q567U6 631 aa17.22■□□□□ 0.35
LINC00339-202ENST00000416769 NUTM1Q86Y26 1132 aa17.22■□□□□ 0.35
LINC00339-202ENST00000416769 CFAP53Q96M91 514 aa17.22■□□□□ 0.35
LINC00339-202ENST00000416769 THUMPD2Q9BTF0 503 aaKnown RBP17.22■□□□□ 0.35
LINC00339-202ENST00000416769 CREBZFQ9NS37 354 aa17.22■□□□□ 0.35
LINC00339-202ENST00000416769 PASKQ96RG2 1323 aa17.21■□□□□ 0.35
LINC00339-202ENST00000416769 SNED1Q8TER0 1413 aa17.21■□□□□ 0.35
LINC00339-202ENST00000416769 SCN4AP35499 1836 aa17.21■□□□□ 0.35
LINC00339-202ENST00000416769 ADAMTSL1Q8N6G6 1762 aa17.21■□□□□ 0.35
LINC00339-202ENST00000416769 NPR1P16066 1061 aa17.21■□□□□ 0.35
LINC00339-202ENST00000416769 FKBP4Q02790 459 aaKnown RBP eCLIP17.21■□□□□ 0.35
LINC00339-202ENST00000416769 EAPPQ56P03 285 aaPredicted RBP17.21■□□□□ 0.35
LINC00339-202ENST00000416769 CLEC4GQ6UXB4 293 aa17.21■□□□□ 0.35
LINC00339-202ENST00000416769 RTF1Q92541 710 aaKnown RBP17.21■□□□□ 0.35
LINC00339-202ENST00000416769 L3MBTL3Q96JM7 780 aaPredicted RBP17.21■□□□□ 0.35
LINC00339-202ENST00000416769 FOXN1O15353 648 aa17.2■□□□□ 0.34
LINC00339-202ENST00000416769 KDM3BQ7LBC6 1761 aa17.2■□□□□ 0.34
LINC00339-202ENST00000416769 RNF123Q5XPI4 1314 aa17.2■□□□□ 0.34
LINC00339-202ENST00000416769 NUP98P52948 1817 aa17.19■□□□□ 0.34
LINC00339-202ENST00000416769 LTBP1Q14766 1721 aa17.19■□□□□ 0.34
LINC00339-202ENST00000416769 CNTNAP1P78357 1384 aa17.19■□□□□ 0.34
LINC00339-202ENST00000416769 ITGBL1O95965 494 aaPredicted RBP17.19■□□□□ 0.34
LINC00339-202ENST00000416769 TTLL7Q6ZT98 887 aa17.19■□□□□ 0.34
LINC00339-202ENST00000416769 ZNF652Q9Y2D9 606 aa17.19■□□□□ 0.34
LINC00339-202ENST00000416769 ZNF316A6NFI3 1004 aaPredicted RBP17.18■□□□□ 0.34
LINC00339-202ENST00000416769 FMR1Q06787 632 aaKnown RBP eCLIP17.18■□□□□ 0.34
LINC00339-202ENST00000416769 SOGA3Q5TF21 947 aa17.18■□□□□ 0.34
LINC00339-202ENST00000416769 TPTE2Q6XPS3 522 aa17.18■□□□□ 0.34
LINC00339-202ENST00000416769 C3orf67Q6ZVT6 689 aa17.18■□□□□ 0.34
LINC00339-202ENST00000416769 LDHDQ86WU2 507 aa17.18■□□□□ 0.34
LINC00339-202ENST00000416769 SYNE4Q8N205 404 aa17.18■□□□□ 0.34
LINC00339-202ENST00000416769 NUDCQ9Y266 331 aa17.18■□□□□ 0.34
LINC00339-202ENST00000416769 UBN2Q6ZU65 1347 aa17.18■□□□□ 0.34
LINC00339-202ENST00000416769 GPTP24298 496 aa17.17■□□□□ 0.34
LINC00339-202ENST00000416769 VEGFBP49765 207 aa17.17■□□□□ 0.34
LINC00339-202ENST00000416769 MAP1SQ66K74 1059 aaPredicted RBP17.17■□□□□ 0.34
LINC00339-202ENST00000416769 IQCA1LA6NCM1 817 aa17.16■□□□□ 0.34
LINC00339-202ENST00000416769 EPHX2P34913 555 aa17.16■□□□□ 0.34
LINC00339-202ENST00000416769 IARSP41252 1262 aaKnown RBP17.16■□□□□ 0.34
LINC00339-202ENST00000416769 TAF7Q15545 349 aaPredicted RBP17.16■□□□□ 0.34
LINC00339-202ENST00000416769 TCERG1O14776 1098 aaKnown RBP17.15■□□□□ 0.34
LINC00339-202ENST00000416769 ZBTB3Q9H5J0 574 aa17.15■□□□□ 0.34
LINC00339-202ENST00000416769 HACL1Q9UJ83 578 aa17.15■□□□□ 0.34
LINC00339-202ENST00000416769 CLEC11AQ9Y240 323 aa17.15■□□□□ 0.34
LINC00339-202ENST00000416769 RRP7AQ9Y3A4 280 aaKnown RBP17.15■□□□□ 0.34
LINC00339-202ENST00000416769 FZD9O00144 591 aa17.14■□□□□ 0.33
LINC00339-202ENST00000416769 MYL6BP14649 208 aa17.14■□□□□ 0.33
LINC00339-202ENST00000416769 CRY2Q49AN0 593 aa17.14■□□□□ 0.33
LINC00339-202ENST00000416769 GTF2E1P29083 439 aaPredicted RBP17.13■□□□□ 0.33
LINC00339-202ENST00000416769 EIF4A1P60842 406 aaKnown RBP17.13■□□□□ 0.33
LINC00339-202ENST00000416769 SUSD4Q5VX71 490 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms