RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 KCNB2Q92953 911 aa11.77□□□□□ -0.53
CD44-206ENST00000415148 ZSCAN31Q96LW9 406 aaPredicted RBP11.77□□□□□ -0.53
CD44-206ENST00000415148 TM6SF1Q9BZW5 370 aa11.77□□□□□ -0.53
CD44-206ENST00000415148 PRDM10Q9NQV6 1147 aa11.77□□□□□ -0.53
CD44-206ENST00000415148 PTMAP06454 111 aaKnown RBP11.76□□□□□ -0.53
CD44-206ENST00000415148 CCDC183Q5T5S1 534 aa11.76□□□□□ -0.53
CD44-206ENST00000415148 SASS6Q6UVJ0 657 aa11.76□□□□□ -0.53
CD44-206ENST00000415148 AP5Z1O43299 807 aa11.76□□□□□ -0.53
CD44-206ENST00000415148 ALDH1L1O75891 902 aa11.76□□□□□ -0.53
CD44-206ENST00000415148 NBPF7P0C2Y1 421 aaPredicted RBP11.76□□□□□ -0.53
CD44-206ENST00000415148 UBE2HP62256 183 aa11.76□□□□□ -0.53
CD44-206ENST00000415148 ERC1Q8IUD2 1116 aa11.76□□□□□ -0.53
CD44-206ENST00000415148 LMO7Q8WWI1 1683 aa11.76□□□□□ -0.53
CD44-206ENST00000415148 LTN1O94822 1766 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 PHRF1Q9P1Y6 1649 aaKnown RBP11.75□□□□□ -0.53
CD44-206ENST00000415148 STX6O43752 255 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 AK2P54819 239 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 VPS53Q5VIR6 699 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 RASEFQ8IZ41 740 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 PI4KAP2A4QPH2 592 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 LARGE1O95461 756 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 HCLS1P14317 486 aaPredicted RBP11.75□□□□□ -0.53
CD44-206ENST00000415148 AKAP4Q5JQC9 854 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 RUFY3Q7L099 469 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 ZNF710Q8N1W2 664 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 CLASRPQ8N2M8 674 aaKnown RBP11.75□□□□□ -0.53
CD44-206ENST00000415148 PI4KAP1Q8N8J0 262 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 GPATCH3Q96I76 525 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 MAP7D2Q96T17 732 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 SH2B1Q9NRF2 756 aaPredicted RBP11.75□□□□□ -0.53
CD44-206ENST00000415148 CHPF2Q9P2E5 772 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 SMC3Q9UQE7 1217 aa11.75□□□□□ -0.53
CD44-206ENST00000415148 OVOS2A0A0G2JMS6 1433 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 DYNC1I1O14576 645 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 EIF2S2P20042 333 aaKnown RBP11.74□□□□□ -0.53
CD44-206ENST00000415148 SYT1P21579 422 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 LTV1Q96GA3 475 aaPredicted RBP11.74□□□□□ -0.53
CD44-206ENST00000415148 HYPKQ9NX55 129 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 DBF4Q9UBU7 674 aaPredicted RBP11.74□□□□□ -0.53
CD44-206ENST00000415148 F13A1P00488 732 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 CEBPAP49715 358 aaPredicted RBP11.74□□□□□ -0.53
CD44-206ENST00000415148 KIAA2012Q0VF49 1180 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 KCNH5Q8NCM2 988 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 ZSWIM6Q9HCJ5 1215 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 DIAPH3Q9NSV4 1193 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 ECHDC1Q9NTX5 307 aa11.74□□□□□ -0.53
CD44-206ENST00000415148 NCAPD2Q15021 1401 aa11.73□□□□□ -0.53
CD44-206ENST00000415148 ADCY9O60503 1353 aa11.73□□□□□ -0.53
CD44-206ENST00000415148 HIP1O00291 1037 aa11.73□□□□□ -0.53
CD44-206ENST00000415148 ADCY5O95622 1261 aa11.73□□□□□ -0.53
CD44-206ENST00000415148 COL9A3Q14050 684 aaPredicted RBP11.73□□□□□ -0.53
CD44-206ENST00000415148 AMOTQ4VCS5 1084 aa11.73□□□□□ -0.53
CD44-206ENST00000415148 PLEKHO1Q53GL0 409 aaPredicted RBP11.73□□□□□ -0.53
CD44-206ENST00000415148 NUTM2GQ5VZR2 741 aa11.73□□□□□ -0.53
CD44-206ENST00000415148 CWC27Q6UX04 472 aaKnown RBP11.73□□□□□ -0.53
CD44-206ENST00000415148 EVI5LQ96CN4 794 aa11.73□□□□□ -0.53
CD44-206ENST00000415148 LGR6Q9HBX8 967 aa11.73□□□□□ -0.53
CD44-206ENST00000415148 NFAT5O94916 1531 aa11.73□□□□□ -0.53
CD44-206ENST00000415148 BTBD11A6QL63 1104 aa11.72□□□□□ -0.53
CD44-206ENST00000415148 TEFQ10587 303 aa11.72□□□□□ -0.53
CD44-206ENST00000415148 NBPF6Q5VWK0 638 aa11.72□□□□□ -0.53
CD44-206ENST00000415148 DDX54Q8TDD1 881 aaKnown RBP11.72□□□□□ -0.53
CD44-206ENST00000415148 NBPF4Q96M43 638 aa11.72□□□□□ -0.53
CD44-206ENST00000415148 KCNA6P17658 529 aa11.72□□□□□ -0.53
CD44-206ENST00000415148 CASTP20810 708 aaKnown RBP11.72□□□□□ -0.53
CD44-206ENST00000415148 OS9Q13438 667 aaPredicted RBP11.72□□□□□ -0.53
CD44-206ENST00000415148 PDRG1Q9NUG6 133 aa11.72□□□□□ -0.53
CD44-206ENST00000415148 PHF8Q9UPP1 1060 aa11.72□□□□□ -0.53
CD44-206ENST00000415148 CYP46A1Q9Y6A2 500 aa11.72□□□□□ -0.53
CD44-206ENST00000415148 NECTIN1Q15223 517 aa11.71□□□□□ -0.53
CD44-206ENST00000415148 GIMAP6Q6P9H5 292 aa11.71□□□□□ -0.53
CD44-206ENST00000415148 KSR2Q6VAB6 950 aa11.71□□□□□ -0.53
CD44-206ENST00000415148 MTERF4Q7Z6M4 381 aaKnown RBP11.71□□□□□ -0.53
CD44-206ENST00000415148 USHBP1Q8N6Y0 703 aa11.71□□□□□ -0.53
CD44-206ENST00000415148 SNRKQ9NRH2 765 aa11.71□□□□□ -0.53
CD44-206ENST00000415148 CHD2O14647 1828 aaKnown RBP11.71□□□□□ -0.53
CD44-206ENST00000415148 FIBPO43427 364 aa11.71□□□□□ -0.54
CD44-206ENST00000415148 IFIT2P09913 472 aaKnown RBP11.71□□□□□ -0.54
CD44-206ENST00000415148 NOLC1Q14978 699 aaKnown RBP eCLIP11.71□□□□□ -0.54
CD44-206ENST00000415148 DNTTIP2Q5QJE6 756 aaKnown RBP11.71□□□□□ -0.54
CD44-206ENST00000415148 MYRIPQ8NFW9 859 aa11.71□□□□□ -0.54
CD44-206ENST00000415148 ALDH8A1Q9H2A2 487 aaPredicted RBP11.71□□□□□ -0.54
CD44-206ENST00000415148 SPG7Q9UQ90 795 aa11.71□□□□□ -0.54
CD44-206ENST00000415148 HEG1Q9ULI3 1381 aa11.71□□□□□ -0.54
CD44-206ENST00000415148 UTYO14607 1347 aa11.71□□□□□ -0.54
CD44-206ENST00000415148 ZKSCAN1P17029 563 aaPredicted RBP11.7□□□□□ -0.54
CD44-206ENST00000415148 PIBF1Q8WXW3 757 aa11.7□□□□□ -0.54
CD44-206ENST00000415148 C9orf78Q9NZ63 289 aaPredicted RBP11.7□□□□□ -0.54
CD44-206ENST00000415148 LMTK3Q96Q04 1460 aa11.7□□□□□ -0.54
CD44-206ENST00000415148 GJB2P29033 226 aa11.7□□□□□ -0.54
CD44-206ENST00000415148 KCNF1Q9H3M0 494 aa11.7□□□□□ -0.54
CD44-206ENST00000415148 RNMTO43148 476 aaKnown RBP11.69□□□□□ -0.54
CD44-206ENST00000415148 PSMA5P28066 241 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 PLCB2Q00722 1185 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 PTH1RQ03431 593 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 ST3GAL1Q11201 340 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 MAP4K1Q92918 833 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 JAKMIP1Q96N16 626 aaKnown RBP11.69□□□□□ -0.54
CD44-206ENST00000415148 FUCA2Q9BTY2 467 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 PYCARDQ9ULZ3 195 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms