RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.03■□□□□ 0.32
LIMS1-204ENST00000409441 PHF14O94880 888 aa17.03■□□□□ 0.32
LIMS1-204ENST00000409441 ARHGEF1Q92888 912 aaKnown RBP17.03■□□□□ 0.32
LIMS1-204ENST00000409441 LAMB4A4D0S4 1761 aa17.03■□□□□ 0.32
LIMS1-204ENST00000409441 A0A087WZG4 1122 aa17.03■□□□□ 0.32
LIMS1-204ENST00000409441 SSFA2P28290 1259 aa17.03■□□□□ 0.32
LIMS1-204ENST00000409441 BRPF1P55201 1214 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-204ENST00000409441 C20orf194Q5TEA3 1177 aa17.03■□□□□ 0.32
LIMS1-204ENST00000409441 TBC1D2BQ9UPU7 963 aa17.03■□□□□ 0.32
LIMS1-204ENST00000409441 FLIIQ13045 1269 aa17.02■□□□□ 0.31
LIMS1-204ENST00000409441 TTLL7Q6ZT98 887 aa17.02■□□□□ 0.31
LIMS1-204ENST00000409441 NOB1Q9ULX3 412 aaKnown RBP17.02■□□□□ 0.31
LIMS1-204ENST00000409441 RREB1Q92766 1687 aa17.02■□□□□ 0.31
LIMS1-204ENST00000409441 RFC4P35249 363 aa17.01■□□□□ 0.31
LIMS1-204ENST00000409441 ANKRD13DQ6ZTN6 518 aa17.01■□□□□ 0.31
LIMS1-204ENST00000409441 DZIP3Q86Y13 1208 aaKnown RBP17.01■□□□□ 0.31
LIMS1-204ENST00000409441 FLAD1Q8NFF5 587 aa17.01■□□□□ 0.31
LIMS1-204ENST00000409441 COL15A1P39059 1388 aa17■□□□□ 0.31
LIMS1-204ENST00000409441 PDE3AQ14432 1141 aa17■□□□□ 0.31
LIMS1-204ENST00000409441 COL23A1Q86Y22 540 aaPredicted RBP17■□□□□ 0.31
LIMS1-204ENST00000409441 FRAT1Q92837 279 aaPredicted RBP17■□□□□ 0.31
LIMS1-204ENST00000409441 FKBP5Q13451 457 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-204ENST00000409441 KIF6Q6ZMV9 814 aa16.99■□□□□ 0.31
LIMS1-204ENST00000409441 NUP188Q5SRE5 1749 aa16.99■□□□□ 0.31
LIMS1-204ENST00000409441 PNPLA7Q6ZV29 1317 aa16.99■□□□□ 0.31
LIMS1-204ENST00000409441 ZPR1O75312 459 aa16.99■□□□□ 0.31
LIMS1-204ENST00000409441 DDX58O95786 925 aaKnown RBP16.99■□□□□ 0.31
LIMS1-204ENST00000409441 MS4A1P11836 297 aa16.99■□□□□ 0.31
LIMS1-204ENST00000409441 NARFQ9UHQ1 456 aa16.99■□□□□ 0.31
LIMS1-204ENST00000409441 PI4KAP2A4QPH2 592 aa16.98■□□□□ 0.31
LIMS1-204ENST00000409441 IPO8O15397 1037 aaKnown RBP16.98■□□□□ 0.31
LIMS1-204ENST00000409441 KSR2Q6VAB6 950 aa16.98■□□□□ 0.31
LIMS1-204ENST00000409441 PI4KAP1Q8N8J0 262 aa16.98■□□□□ 0.31
LIMS1-204ENST00000409441 PLBD2Q8NHP8 589 aa16.98■□□□□ 0.31
LIMS1-204ENST00000409441 ZBTB3Q9H5J0 574 aa16.98■□□□□ 0.31
LIMS1-204ENST00000409441 SRP68Q9UHB9 627 aaKnown RBP16.98■□□□□ 0.31
LIMS1-204ENST00000409441 PTPRCP08575 1304 aa16.97■□□□□ 0.31
LIMS1-204ENST00000409441 MAP3K15Q6ZN16 1313 aa16.97■□□□□ 0.31
LIMS1-204ENST00000409441 KDM2BQ8NHM5 1336 aa16.97■□□□□ 0.31
LIMS1-204ENST00000409441 KIF16BQ96L93 1317 aa16.97■□□□□ 0.31
LIMS1-204ENST00000409441 ERVV-1B6SEH8 477 aa16.97■□□□□ 0.31
LIMS1-204ENST00000409441 CAMTA2O94983 1202 aa16.97■□□□□ 0.31
LIMS1-204ENST00000409441 CENPQQ7L2Z9 268 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-204ENST00000409441 RIC3Q7Z5B4 369 aa16.97■□□□□ 0.31
LIMS1-204ENST00000409441 ARHGAP45Q92619 1136 aa16.97■□□□□ 0.31
LIMS1-204ENST00000409441 R3HDM1Q15032 1099 aaKnown RBP16.96■□□□□ 0.31
LIMS1-204ENST00000409441 USPL1Q5W0Q7 1092 aa16.96■□□□□ 0.31
LIMS1-204ENST00000409441 F6X3S4 739 aa16.96■□□□□ 0.3
LIMS1-204ENST00000409441 AAMPQ13685 434 aa16.96■□□□□ 0.3
LIMS1-204ENST00000409441 HLFQ16534 295 aa16.96■□□□□ 0.3
LIMS1-204ENST00000409441 ZKSCAN2Q63HK3 967 aa16.96■□□□□ 0.3
LIMS1-204ENST00000409441 PDGFDQ9GZP0 370 aaPredicted RBP16.96■□□□□ 0.3
LIMS1-204ENST00000409441 MAP3K2Q9Y2U5 619 aa16.96■□□□□ 0.3
LIMS1-204ENST00000409441 USP42Q9H9J4 1324 aaKnown RBP16.95■□□□□ 0.3
LIMS1-204ENST00000409441 ATF7IPQ6VMQ6 1270 aa16.95■□□□□ 0.3
LIMS1-204ENST00000409441 API5Q9BZZ5 524 aaKnown RBP16.95■□□□□ 0.3
LIMS1-204ENST00000409441 UBR3Q6ZT12 1888 aa16.95■□□□□ 0.3
LIMS1-204ENST00000409441 CLEC4GQ6UXB4 293 aa16.94■□□□□ 0.3
LIMS1-204ENST00000409441 GIGYF2Q6Y7W6 1299 aaKnown RBP16.94■□□□□ 0.3
LIMS1-204ENST00000409441 BCL2L12Q9HB09 334 aa16.94■□□□□ 0.3
LIMS1-204ENST00000409441 CACNA1FO60840 1977 aa16.94■□□□□ 0.3
LIMS1-204ENST00000409441 ADCY9O60503 1353 aa16.94■□□□□ 0.3
LIMS1-204ENST00000409441 PSDA5PKW4 1024 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-204ENST00000409441 GYS1P13807 737 aa16.93■□□□□ 0.3
LIMS1-204ENST00000409441 TRIM27P14373 513 aa16.93■□□□□ 0.3
LIMS1-204ENST00000409441 DNAAF4Q8WXU2 420 aa16.93■□□□□ 0.3
LIMS1-204ENST00000409441 RGL2O15211 777 aa16.92■□□□□ 0.3
LIMS1-204ENST00000409441 TCIRG1Q13488 830 aa16.92■□□□□ 0.3
LIMS1-204ENST00000409441 SLC4A10Q6U841 1118 aa16.92■□□□□ 0.3
LIMS1-204ENST00000409441 METTL22Q9BUU2 404 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-204ENST00000409441 ZNF652Q9Y2D9 606 aa16.92■□□□□ 0.3
LIMS1-204ENST00000409441 CLUAP1Q96AJ1 413 aa16.92■□□□□ 0.3
LIMS1-204ENST00000409441 TNNQ9UQP3 1299 aa16.92■□□□□ 0.3
LIMS1-204ENST00000409441 HSP90AB3PQ58FF7 597 aa16.91■□□□□ 0.3
LIMS1-204ENST00000409441 NLGN1Q8N2Q7 840 aa16.91■□□□□ 0.3
LIMS1-204ENST00000409441 MYD88Q99836 296 aa16.91■□□□□ 0.3
LIMS1-204ENST00000409441 ATP5J2-PTCD1G3V325 749 aa16.9■□□□□ 0.3
LIMS1-204ENST00000409441 NEXNQ0ZGT2 675 aa16.9■□□□□ 0.3
LIMS1-204ENST00000409441 SLC16A10Q8TF71 515 aa16.9■□□□□ 0.3
LIMS1-204ENST00000409441 TBC1D9BQ66K14 1250 aa16.89■□□□□ 0.29
LIMS1-204ENST00000409441 BICDL1Q6ZP65 573 aa16.89■□□□□ 0.29
LIMS1-204ENST00000409441 DZIP1LQ8IYY4 767 aaKnown RBP16.89■□□□□ 0.29
LIMS1-204ENST00000409441 ZNF34Q8IZ26 560 aa16.89■□□□□ 0.29
LIMS1-204ENST00000409441 GPTP24298 496 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 BEND3Q5T5X7 828 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 MSL1Q68DK7 614 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 LINS1Q8NG48 757 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 SETDB2Q96T68 719 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 ISCA1Q9BUE6 129 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 NIP7Q9Y221 180 aaKnown RBP eCLIP16.88■□□□□ 0.29
LIMS1-204ENST00000409441 TUBGCP6Q96RT7 1819 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 IGKV5-2P06315 115 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 TM4SF1P30408 202 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 TRIM28Q13263 835 aaKnown RBP16.88■□□□□ 0.29
LIMS1-204ENST00000409441 NFIXQ14938 502 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 FTSJ3Q8IY81 847 aaKnown RBP16.88■□□□□ 0.29
LIMS1-204ENST00000409441 PANK1Q8TE04 598 aa16.88■□□□□ 0.29
LIMS1-204ENST00000409441 ZBTB7AO95365 584 aa16.87■□□□□ 0.29
LIMS1-204ENST00000409441 RLBP1P12271 317 aa16.87■□□□□ 0.29
LIMS1-204ENST00000409441 CWF19L2Q2TBE0 894 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms